Wall clock time and date at job start Sun Mar 29 2020 22:47:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47174 * 2 1 4 4 O 1.42905 * 109.46802 * 120.00062 * 2 1 3 5 5 C 1.35677 * 116.99668 * 150.00060 * 4 2 1 6 6 C 1.38919 * 119.68049 * 179.97438 * 5 4 2 7 7 C 1.38383 * 119.11063 * 179.97438 * 6 5 4 8 8 C 1.50701 * 120.75454 * 179.97438 * 7 6 5 9 9 O 1.42906 * 109.46803 * 90.00396 * 8 7 6 10 10 C 1.34930 * 116.99562 * 179.97438 * 9 8 7 11 11 H 1.07997 * 120.00108 * 0.02562 * 10 9 8 12 12 C 1.38636 * 119.99656 * 179.97438 * 10 9 8 13 13 N 1.31581 * 120.00342 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99855 * 179.97438 * 12 10 9 15 15 H 1.48502 * 109.46989 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.46947 * 120.00052 * 14 12 10 17 17 H 1.48494 * 109.47508 * 240.00322 * 14 12 10 18 18 C 1.38824 * 118.48242 * 0.02562 * 7 6 5 19 19 C 1.38041 * 119.29224 * 359.97438 * 18 7 6 20 20 N 1.31968 * 120.83299 * 359.74540 * 19 18 7 21 21 H 1.09001 * 109.47101 * 300.00440 * 1 2 3 22 22 H 1.09002 * 109.46859 * 60.00069 * 1 2 3 23 23 H 1.09001 * 109.47197 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47101 * 239.99560 * 2 1 3 25 25 H 1.08997 * 109.46785 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47171 * 299.99740 * 3 2 1 27 27 H 1.09004 * 109.47223 * 60.00243 * 3 2 1 28 28 H 1.08000 * 120.44774 * 359.97438 * 6 5 4 29 29 H 1.09004 * 109.46826 * 209.99472 * 8 7 6 30 30 H 1.08995 * 109.47411 * 329.99930 * 8 7 6 31 31 H 0.96994 * 120.00224 * 179.97438 * 13 12 10 32 32 H 1.08002 * 120.35185 * 179.97438 * 18 7 6 33 33 H 1.08001 * 119.58442 * 179.97438 * 19 18 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.1987 -1.3130 1.0653 6 6 3.7146 -1.9855 2.1660 7 6 4.9314 -2.6341 2.0491 8 6 5.5256 -3.3744 3.2196 9 8 5.0778 -4.7313 3.2019 10 6 5.5223 -5.5359 4.1897 11 1 6.1857 -5.1452 4.9470 12 6 5.1264 -6.8638 4.2329 13 7 4.3177 -7.3397 3.3105 14 14 5.7423 -7.9779 5.6000 15 1 6.6331 -7.2065 6.5037 16 1 4.5860 -8.4994 6.3723 17 1 6.4968 -9.1133 5.0113 18 6 5.5927 -2.5862 0.8294 19 6 5.0209 -1.8989 -0.2223 20 7 3.8561 -1.2947 -0.0820 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8934 -0.5139 -0.8899 25 1 3.1300 1.4424 0.0005 26 1 1.6768 1.9563 -0.8900 27 1 1.6768 1.9563 0.8900 28 1 3.1732 -2.0020 3.1004 29 1 6.6132 -3.3498 3.1507 30 1 5.2095 -2.8994 4.1483 31 1 4.0410 -8.2689 3.3406 32 1 6.5444 -3.0814 0.7048 33 1 5.5314 -1.8583 -1.1732 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224386371.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:47:16 Heat of formation + Delta-G solvation = -66.383234 kcal Electronic energy + Delta-G solvation = -16200.762653 eV Core-core repulsion = 13419.567097 eV Total energy + Delta-G solvation = -2781.195556 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.68627 -39.44498 -38.20844 -34.54883 -34.22635 -33.40712 -31.10224 -28.27305 -28.12898 -26.27819 -24.39696 -23.74917 -21.63144 -19.78844 -19.09618 -17.89696 -17.42537 -16.88931 -16.65906 -15.96097 -15.85930 -15.52598 -14.96716 -14.86389 -14.68454 -14.10724 -13.67525 -13.26885 -13.17975 -13.06132 -12.91127 -12.84255 -12.76305 -12.05808 -11.90462 -11.72511 -11.60911 -11.51710 -10.71811 -10.59233 -10.21608 -9.47778 -8.20378 -5.92226 0.12160 0.22282 1.40820 1.46478 1.57585 2.00842 2.32126 2.74480 3.13127 3.30682 3.65419 3.92508 3.97157 4.04800 4.11086 4.18744 4.29553 4.34627 4.56841 4.60177 4.70180 4.73976 4.84248 4.84817 4.90942 4.93991 5.20455 5.21908 5.27016 5.42481 5.50409 6.17496 6.29748 6.80959 7.21809 7.97152 9.04409 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.040917 B = 0.004826 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.146822 B = 5800.666776 C = 6111.565770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.070 3.930 3 C -0.160 4.160 4 O -0.317 6.317 5 C 0.312 3.688 6 C -0.193 4.193 7 C -0.010 4.010 8 C 0.103 3.897 9 O -0.329 6.329 10 C -0.383 4.383 11 H 0.080 0.920 12 C -0.041 4.041 13 N -0.940 5.940 14 Si 1.010 2.990 15 H -0.254 1.254 16 H -0.277 1.277 17 H -0.274 1.274 18 C -0.197 4.197 19 C 0.140 3.860 20 N -0.545 5.545 21 H 0.067 0.933 22 H 0.103 0.897 23 H 0.053 0.947 24 H 0.080 0.920 25 H 0.046 0.954 26 H 0.094 0.906 27 H 0.063 0.937 28 H 0.132 0.868 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.261 0.739 32 H 0.152 0.848 33 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.742 15.255 -6.802 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.217 4.217 4 O -0.225 6.225 5 C 0.134 3.866 6 C -0.213 4.213 7 C -0.017 4.017 8 C 0.026 3.974 9 O -0.245 6.245 10 C -0.461 4.461 11 H 0.097 0.903 12 C -0.234 4.234 13 N -0.584 5.584 14 Si 0.831 3.169 15 H -0.178 1.178 16 H -0.203 1.203 17 H -0.200 1.200 18 C -0.217 4.217 19 C -0.015 4.015 20 N -0.270 5.270 21 H 0.086 0.914 22 H 0.122 0.878 23 H 0.072 0.928 24 H 0.098 0.902 25 H 0.065 0.935 26 H 0.113 0.887 27 H 0.082 0.918 28 H 0.150 0.850 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.169 0.831 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -2.504 15.556 -7.460 17.434 hybrid contribution 0.647 -1.013 1.343 1.802 sum -1.857 14.544 -6.117 15.887 Atomic orbital electron populations 1.21930 0.91227 1.02925 1.04255 1.22638 0.95794 0.93226 0.86944 1.22162 1.01106 0.94729 1.03713 1.86282 1.31398 1.64713 1.40119 1.19710 0.86556 0.90581 0.89760 1.21004 0.97426 1.03049 0.99857 1.20104 0.93172 0.92531 0.95934 1.21186 0.97343 0.84680 0.94157 1.85660 1.71175 1.17462 1.50219 1.21444 1.27812 0.92038 1.04831 0.90284 1.26294 0.97792 0.98012 1.01266 1.70221 1.36518 1.15240 1.36469 0.84643 0.77946 0.77598 0.76684 1.17758 1.20256 1.19990 1.22156 1.03624 1.03006 0.92905 1.22951 0.89014 0.90015 0.99511 1.67295 1.11117 1.24771 1.23775 0.91377 0.87850 0.92772 0.90180 0.93524 0.88702 0.91833 0.84963 0.92677 0.93848 0.92983 0.83073 0.78255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.56 71.98 0.69 -2.07 16 2 C 0.07 1.70 3.11 30.60 0.10 1.79 16 3 C -0.16 -3.17 9.53 71.98 0.69 -2.49 16 4 O -0.32 -10.32 9.76 -89.95 -0.88 -11.20 16 5 C 0.31 11.12 7.45 84.79 0.63 11.75 16 6 C -0.19 -7.52 9.75 22.47 0.22 -7.30 16 7 C -0.01 -0.39 5.54 -19.69 -0.11 -0.50 16 8 C 0.10 4.63 6.19 71.24 0.44 5.07 16 9 O -0.33 -19.48 9.76 -81.99 -0.80 -20.29 16 10 C -0.38 -22.70 9.89 67.91 0.67 -22.03 16 11 H 0.08 4.29 7.77 -2.91 -0.02 4.27 16 12 C -0.04 -2.39 5.49 84.83 0.47 -1.93 16 13 N -0.94 -60.63 13.67 21.61 0.30 -60.34 16 14 Si 1.01 44.97 29.55 68.60 2.03 47.00 16 15 H -0.25 -10.37 7.11 99.48 0.71 -9.67 16 16 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 17 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 18 C -0.20 -6.58 9.81 22.36 0.22 -6.36 16 19 C 0.14 4.03 11.18 84.63 0.95 4.98 16 20 N -0.54 -17.56 8.64 -308.96 -2.67 -20.23 16 21 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 22 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 23 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.08 2.08 6.98 -2.39 -0.02 2.06 16 25 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.13 5.14 8.06 -2.91 -0.02 5.11 16 29 H 0.06 2.26 8.10 -2.39 -0.02 2.24 16 30 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 31 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 32 H 0.15 4.49 8.06 -2.91 -0.02 4.47 16 33 H 0.20 3.87 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -74.32 292.51 4.01 -70.30 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 1.09 Total: 13.83 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 4.96 Total: -19.08 kcal Atomic # 7 Polarization: -78.19 SS G_CDS: -2.38 Total: -80.57 kcal Atomic # 8 Polarization: -29.80 SS G_CDS: -1.68 Total: -31.48 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -74.32 4.01 -70.30 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224386371.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.920 kcal (2) G-P(sol) polarization free energy of solvation -74.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds