Wall clock time and date at job start Sun Mar 29 2020 21:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 H 1.07997 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31505 * 120.00126 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99768 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47153 * 90.00300 * 8 6 4 10 10 H 1.48500 * 109.47164 * 210.00281 * 8 6 4 11 11 H 1.48500 * 109.47172 * 330.00283 * 8 6 4 12 12 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 13 13 C 1.50697 * 109.47095 * 293.94952 * 12 2 1 14 14 C 1.38303 * 119.92339 * 269.72509 * 13 12 2 15 15 C 1.38083 * 120.07996 * 179.76422 * 14 13 12 16 16 C 1.38967 * 119.91808 * 0.51639 * 15 14 13 17 17 S 1.76202 * 120.07985 * 179.71948 * 16 15 14 18 18 C 1.38976 * 119.84149 * 359.73816 * 16 15 14 19 19 C 1.38079 * 119.91824 * 0.02562 * 18 16 15 20 20 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 21 21 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 22 22 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 23 23 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 24 24 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 25 25 H 0.97004 * 120.00138 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.47062 * 53.95734 * 12 2 1 27 27 H 1.09003 * 109.46753 * 173.95421 * 12 2 1 28 28 H 1.08004 * 119.95790 * 0.02562 * 14 13 12 29 29 H 1.08003 * 120.03630 * 180.25397 * 15 14 13 30 30 H 1.34497 * 103.00124 * 270.01753 * 17 16 15 31 31 H 1.08003 * 120.03977 * 179.97438 * 18 16 15 32 32 H 1.08003 * 119.96064 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3496 1.5285 7 7 1.7143 3.9390 2.6618 8 14 2.9997 4.2763 0.2309 9 1 2.0630 4.9799 -0.6816 10 1 3.8861 5.2680 0.8913 11 1 3.8236 3.3177 -0.5485 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 2.4983 -3.0718 -0.3049 15 6 2.1708 -4.4040 -0.1478 16 6 0.9792 -4.8912 -0.6711 17 16 0.5606 -6.5920 -0.4795 18 6 0.1187 -4.0339 -1.3462 19 6 0.4504 -2.7018 -1.4952 20 1 -0.3632 -1.0253 0.0709 21 1 -0.3634 0.5739 0.8525 22 1 -0.3633 0.4512 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 1.9882 4.8554 2.8235 26 1 1.5612 -0.3872 -2.0627 27 1 3.0798 -0.6611 -1.1756 28 1 3.4262 -2.6933 0.0979 29 1 2.8420 -5.0674 0.3774 30 1 1.0972 -7.1608 -1.5738 31 1 -0.8081 -4.4092 -1.7546 32 1 -0.2176 -2.0350 -2.0201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233258734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:39 Heat of formation + Delta-G solvation = 33.824082 kcal Electronic energy + Delta-G solvation = -14177.458520 eV Core-core repulsion = 11843.361150 eV Total energy + Delta-G solvation = -2334.097370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.37928 -36.54401 -32.73285 -31.41806 -31.03482 -27.88664 -26.79628 -23.89529 -22.66067 -21.36388 -20.15277 -18.22203 -16.91943 -16.18536 -15.48507 -15.24919 -14.81313 -14.32225 -14.05856 -13.62815 -13.45324 -12.90864 -12.67089 -12.29354 -11.83649 -11.57668 -11.34384 -11.14225 -10.91936 -10.82692 -10.65071 -10.20028 -9.87357 -9.32682 -8.94271 -8.72515 -8.59913 -8.32036 -7.46246 -6.07633 -4.05407 0.90036 1.39517 1.61754 2.68261 3.25516 3.33606 3.34496 3.69474 4.39045 4.78393 4.86216 4.96566 5.04519 5.25268 5.36129 5.42911 5.69001 5.70337 5.93984 6.03427 6.08324 6.19629 6.26650 6.29650 6.62410 6.70732 6.79618 6.88171 6.93801 7.54028 7.82313 7.96766 8.61699 9.01191 9.53437 11.05453 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.056025 B = 0.004626 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.661204 B = 6051.617474 C = 6095.114186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.524 5.524 3 C 0.162 3.838 4 C -0.510 4.510 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.875 3.125 9 H -0.278 1.278 10 H -0.285 1.285 11 H -0.267 1.267 12 C 0.081 3.919 13 C -0.033 4.033 14 C -0.106 4.106 15 C -0.073 4.073 16 C -0.118 4.118 17 S -0.138 6.138 18 C -0.074 4.074 19 C -0.122 4.122 20 H 0.052 0.948 21 H 0.081 0.919 22 H 0.012 0.988 23 H 0.029 0.971 24 H -0.015 1.015 25 H 0.264 0.736 26 H 0.036 0.964 27 H 0.080 0.920 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.070 0.930 31 H 0.129 0.871 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.569 -15.929 -9.766 18.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.247 5.247 3 C 0.036 3.964 4 C -0.548 4.548 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.703 3.297 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.192 1.192 12 C -0.047 4.047 13 C -0.033 4.033 14 C -0.127 4.127 15 C -0.093 4.093 16 C -0.230 4.230 17 S 0.020 5.980 18 C -0.095 4.095 19 C -0.142 4.142 20 H 0.071 0.929 21 H 0.100 0.900 22 H 0.030 0.970 23 H 0.047 0.953 24 H 0.002 0.998 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.098 0.902 28 H 0.150 0.850 29 H 0.149 0.851 30 H 0.034 0.966 31 H 0.147 0.853 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.710 -16.812 -8.933 19.051 hybrid contribution 0.897 1.670 -2.307 2.986 sum 0.187 -15.142 -11.240 18.859 Atomic orbital electron populations 1.22351 0.88079 1.00354 1.00870 1.62002 1.07694 1.16314 1.38711 1.20227 0.95238 0.83754 0.97211 1.21019 1.35708 0.97218 1.00901 0.90053 1.24894 0.95738 0.97331 0.95321 1.69888 1.46806 1.13244 1.23867 0.86865 0.80637 0.80082 0.82150 1.20353 1.21100 1.19221 1.21180 1.00741 0.89310 0.93476 1.20168 0.93455 0.95802 0.93899 1.21126 1.00487 0.92532 0.98515 1.21534 0.94987 0.95892 0.96912 1.21097 0.99283 0.95135 1.07447 1.85989 1.75522 1.02654 1.33881 1.21469 0.98372 0.93224 0.96403 1.21128 0.96879 0.95052 1.01173 0.92922 0.90019 0.96991 0.95302 0.99753 0.92614 0.94628 0.90169 0.85027 0.85136 0.96631 0.85267 0.85615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 8.95 60.07 0.54 1.14 16 2 N -0.52 -10.70 4.74 -245.83 -1.17 -11.87 16 3 C 0.16 3.84 3.79 -4.98 -0.02 3.82 16 4 C -0.51 -14.34 9.01 -34.44 -0.31 -14.65 16 5 H 0.08 2.50 7.37 -52.49 -0.39 2.11 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 7 N -0.90 -27.34 13.96 55.43 0.77 -26.57 16 8 Si 0.88 21.18 27.47 -169.99 -4.67 16.51 16 9 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.18 6.54 56.52 0.37 -5.81 16 12 C 0.08 1.32 5.12 -4.98 -0.03 1.29 16 13 C -0.03 -0.47 4.89 -104.58 -0.51 -0.98 16 14 C -0.11 -1.43 9.69 -39.61 -0.38 -1.82 16 15 C -0.07 -0.90 9.79 -39.37 -0.39 -1.28 16 16 C -0.12 -1.45 6.11 -39.04 -0.24 -1.69 16 17 S -0.14 -1.51 25.78 -107.50 -2.77 -4.28 16 18 C -0.07 -0.89 9.79 -39.37 -0.39 -1.28 16 19 C -0.12 -1.57 7.95 -39.62 -0.32 -1.89 16 20 H 0.05 0.88 6.16 -51.93 -0.32 0.56 16 21 H 0.08 1.74 6.76 -51.93 -0.35 1.39 16 22 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 23 H 0.03 0.69 6.99 -51.93 -0.36 0.32 16 24 H -0.02 -0.36 7.55 -51.93 -0.39 -0.75 16 25 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 26 H 0.04 0.55 8.06 -51.93 -0.42 0.13 16 27 H 0.08 1.26 7.87 -51.93 -0.41 0.85 16 28 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 29 H 0.13 1.37 8.06 -52.48 -0.42 0.94 16 30 H 0.07 0.68 9.07 97.61 0.89 1.57 16 31 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 32 H 0.13 1.47 8.03 -52.48 -0.42 1.05 16 LS Contribution 281.76 15.07 4.25 4.25 Total: -1.00 -29.89 281.76 -8.75 -38.64 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -3.03 Total: -1.22 kcal Atomic # 6 Polarization: -13.32 SS G_CDS: -2.13 Total: -15.46 kcal Atomic # 7 Polarization: -38.04 SS G_CDS: -0.39 Total: -38.43 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -4.67 Total: 16.51 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.77 Total: -4.28 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.89 -8.75 -38.64 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233258734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.467 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds