Wall clock time and date at job start Sun Mar 29 2020 21:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46902 * 110.99573 * 2 1 4 4 C 1.50699 * 109.47144 * 66.05037 * 3 2 1 5 5 H 1.07997 * 120.00089 * 359.97438 * 4 3 2 6 6 C 1.37884 * 120.00067 * 180.02562 * 4 3 2 7 7 N 1.31505 * 120.00126 * 180.02562 * 6 4 3 8 8 Si 1.86798 * 119.99768 * 359.97438 * 6 4 3 9 9 H 1.48502 * 109.47153 * 90.00300 * 8 6 4 10 10 H 1.48500 * 109.47164 * 210.00281 * 8 6 4 11 11 H 1.48500 * 109.47172 * 330.00283 * 8 6 4 12 12 C 1.46898 * 110.99888 * 236.04634 * 2 1 3 13 13 C 1.50697 * 109.47095 * 293.94952 * 12 2 1 14 14 C 1.38303 * 119.92339 * 269.72509 * 13 12 2 15 15 C 1.38083 * 120.07996 * 179.76422 * 14 13 12 16 16 C 1.38967 * 119.91808 * 0.51639 * 15 14 13 17 17 S 1.76202 * 120.07985 * 179.71948 * 16 15 14 18 18 C 1.38976 * 119.84149 * 359.73816 * 16 15 14 19 19 C 1.38079 * 119.91824 * 0.02562 * 18 16 15 20 20 H 1.09001 * 109.46544 * 183.95424 * 1 2 3 21 21 H 1.09001 * 109.47272 * 303.95030 * 1 2 3 22 22 H 1.09000 * 109.47033 * 63.95479 * 1 2 3 23 23 H 1.09001 * 109.46557 * 186.04354 * 3 2 1 24 24 H 1.08994 * 109.47575 * 306.04356 * 3 2 1 25 25 H 0.97004 * 120.00138 * 180.02562 * 7 6 4 26 26 H 1.08992 * 109.47062 * 53.95734 * 12 2 1 27 27 H 1.09003 * 109.46753 * 173.95421 * 12 2 1 28 28 H 1.08004 * 119.95790 * 0.02562 * 14 13 12 29 29 H 1.08003 * 120.03630 * 180.25397 * 15 14 13 30 30 H 1.34497 * 103.00124 * 270.01753 * 17 16 15 31 31 H 1.08003 * 120.03977 * 179.97438 * 18 16 15 32 32 H 1.08003 * 119.96064 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0740 1.5115 2.0485 6 6 2.0267 3.3496 1.5285 7 7 1.7143 3.9390 2.6618 8 14 2.9997 4.2763 0.2309 9 1 2.0630 4.9799 -0.6816 10 1 3.8861 5.2680 0.8913 11 1 3.8236 3.3177 -0.5485 12 6 1.9955 -0.7660 -1.1376 13 6 1.6370 -2.2204 -0.9728 14 6 2.4983 -3.0718 -0.3049 15 6 2.1708 -4.4040 -0.1478 16 6 0.9792 -4.8912 -0.6711 17 16 0.5606 -6.5920 -0.4795 18 6 0.1187 -4.0339 -1.3462 19 6 0.4504 -2.7018 -1.4952 20 1 -0.3632 -1.0253 0.0709 21 1 -0.3634 0.5739 0.8525 22 1 -0.3633 0.4512 -0.9233 23 1 3.0797 1.3444 -0.1082 24 1 1.5611 1.9274 -0.8309 25 1 1.9882 4.8554 2.8235 26 1 1.5612 -0.3872 -2.0627 27 1 3.0798 -0.6611 -1.1756 28 1 3.4262 -2.6933 0.0979 29 1 2.8420 -5.0674 0.3774 30 1 1.0972 -7.1608 -1.5738 31 1 -0.8081 -4.4092 -1.7546 32 1 -0.2176 -2.0350 -2.0201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233258734.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:39 Heat of formation + Delta-G solvation = 15.053556 kcal Electronic energy + Delta-G solvation = -14178.272471 eV Core-core repulsion = 11843.361150 eV Total energy + Delta-G solvation = -2334.911321 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.43454 -38.03983 -34.73975 -32.74626 -32.00283 -29.75248 -28.14803 -25.51199 -23.64311 -22.77673 -21.66570 -19.12155 -18.98574 -17.21297 -16.68056 -16.56596 -16.27653 -15.96350 -15.55963 -14.85519 -14.48178 -14.38158 -14.12997 -13.76537 -13.45238 -12.94558 -12.74989 -12.62740 -12.54902 -12.05045 -11.96560 -11.79185 -11.60338 -11.37702 -10.78427 -9.90738 -9.74368 -9.17484 -9.03157 -8.27058 -6.30901 -0.06618 0.43301 0.70860 1.36020 1.38029 1.48674 1.83249 2.35578 2.67758 3.06274 3.42705 3.82314 3.88577 4.05997 4.27317 4.43007 4.48978 4.59271 4.66552 4.69051 4.81272 4.91208 5.01612 5.09240 5.18998 5.30339 5.31987 5.52792 5.65631 5.89374 5.97943 6.32845 6.63395 6.75739 7.32678 8.89700 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.056025 B = 0.004626 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 499.661204 B = 6051.617474 C = 6095.114186 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.542 5.542 3 C 0.171 3.829 4 C -0.518 4.518 5 H 0.036 0.964 6 C 0.007 3.993 7 N -0.949 5.949 8 Si 0.949 3.051 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.246 1.246 12 C 0.084 3.916 13 C -0.050 4.050 14 C -0.116 4.116 15 C -0.076 4.076 16 C -0.124 4.124 17 S -0.136 6.136 18 C -0.075 4.075 19 C -0.124 4.124 20 H 0.074 0.926 21 H 0.046 0.954 22 H 0.025 0.975 23 H 0.034 0.966 24 H -0.010 1.010 25 H 0.267 0.733 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.133 0.867 29 H 0.147 0.853 30 H 0.083 0.917 31 H 0.150 0.850 32 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.092 -17.050 -11.934 20.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.266 5.266 3 C 0.044 3.956 4 C -0.556 4.556 5 H 0.054 0.946 6 C -0.190 4.190 7 N -0.590 5.590 8 Si 0.772 3.228 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.169 1.169 12 C -0.043 4.043 13 C -0.051 4.051 14 C -0.136 4.136 15 C -0.096 4.096 16 C -0.236 4.236 17 S 0.021 5.979 18 C -0.095 4.095 19 C -0.144 4.144 20 H 0.093 0.907 21 H 0.064 0.936 22 H 0.044 0.956 23 H 0.052 0.948 24 H 0.008 0.992 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.102 0.898 28 H 0.151 0.849 29 H 0.165 0.835 30 H 0.047 0.953 31 H 0.168 0.832 32 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.238 -17.965 -11.116 21.127 hybrid contribution 0.683 1.861 -1.577 2.533 sum 0.446 -16.104 -12.692 20.509 Atomic orbital electron populations 1.22243 0.87526 1.01197 0.99917 1.61852 1.08401 1.14720 1.41647 1.19980 0.95472 0.85474 0.94662 1.21266 1.34900 0.97517 1.01910 0.94578 1.25861 0.96971 0.98415 0.97738 1.70052 1.48632 1.13870 1.26436 0.85698 0.79222 0.78742 0.79153 1.19306 1.20828 1.16942 1.21184 1.00915 0.89918 0.92264 1.20075 0.94647 0.94787 0.95607 1.21240 1.00664 0.93103 0.98614 1.21735 0.95408 0.95692 0.96815 1.21329 0.99224 0.96101 1.06983 1.85998 1.75540 1.01686 1.34644 1.21725 0.99006 0.92826 0.95936 1.21271 0.96454 0.95718 1.00949 0.90739 0.93555 0.95634 0.94845 0.99212 0.92434 0.93337 0.89751 0.84863 0.83540 0.95254 0.83218 0.84428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 8.95 127.69 1.14 2.62 16 2 N -0.54 -21.81 4.74 -931.66 -4.42 -26.23 16 3 C 0.17 8.00 3.79 85.56 0.32 8.32 16 4 C -0.52 -29.80 9.01 25.60 0.23 -29.57 16 5 H 0.04 2.34 7.37 -2.91 -0.02 2.32 16 6 C 0.01 0.42 5.47 84.66 0.46 0.89 16 7 N -0.95 -59.32 13.96 21.45 0.30 -59.02 16 8 Si 0.95 43.31 27.47 68.60 1.88 45.19 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.25 -10.29 6.54 99.48 0.65 -9.64 16 12 C 0.08 2.60 5.12 85.56 0.44 3.04 16 13 C -0.05 -1.36 4.89 -19.83 -0.10 -1.46 16 14 C -0.12 -2.96 9.69 22.25 0.22 -2.75 16 15 C -0.08 -1.74 9.79 22.41 0.22 -1.52 16 16 C -0.12 -2.79 6.11 22.62 0.14 -2.65 16 17 S -0.14 -2.66 25.78 -56.49 -1.46 -4.11 16 18 C -0.07 -1.60 9.79 22.41 0.22 -1.38 16 19 C -0.12 -2.90 7.95 22.25 0.18 -2.73 16 20 H 0.07 2.43 6.16 -2.39 -0.01 2.41 16 21 H 0.05 2.04 6.76 -2.39 -0.02 2.02 16 22 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 23 H 0.03 1.53 6.99 -2.39 -0.02 1.52 16 24 H -0.01 -0.45 7.55 -2.39 -0.02 -0.46 16 25 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 26 H 0.05 1.37 8.06 -2.39 -0.02 1.35 16 27 H 0.08 2.49 7.87 -2.39 -0.02 2.47 16 28 H 0.13 3.26 8.06 -2.91 -0.02 3.23 16 29 H 0.15 2.77 8.06 -2.91 -0.02 2.75 16 30 H 0.08 1.41 9.07 73.35 0.67 2.07 16 31 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 32 H 0.14 2.84 8.03 -2.91 -0.02 2.82 16 Total: -1.00 -64.94 281.76 1.50 -63.44 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.72 Total: 7.92 kcal Atomic # 6 Polarization: -30.65 SS G_CDS: 3.47 Total: -27.18 kcal Atomic # 7 Polarization: -81.13 SS G_CDS: -4.12 Total: -85.26 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.19 kcal Atomic # 16 Polarization: -2.66 SS G_CDS: -1.46 Total: -4.11 kcal Total: -64.94 1.50 -63.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233258734.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.490 kcal (2) G-P(sol) polarization free energy of solvation -64.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds