Wall clock time and date at job start Sun Mar 29 2020 22:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35677 * 116.99804 * 2 1 4 4 N 1.32345 * 119.64962 * 359.97438 * 3 2 1 5 5 C 1.32315 * 121.57771 * 179.97438 * 4 3 2 6 6 O 1.35668 * 119.65083 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00216 * 0.02562 * 6 5 4 8 8 C 1.38798 * 120.69963 * 0.25128 * 5 4 3 9 9 C 1.50703 * 120.38345 * 179.74742 * 8 5 4 10 10 C 1.50696 * 109.47079 * 279.99905 * 9 8 5 11 11 H 1.07994 * 120.00120 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99843 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00244 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99871 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47104 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47051 * 120.00913 * 14 12 10 17 17 H 1.48503 * 109.47071 * 240.00411 * 14 12 10 18 18 C 1.38545 * 119.23532 * 359.49618 * 8 5 4 19 19 C 1.38576 * 118.54435 * 0.49563 * 18 8 5 20 20 C 1.50696 * 120.37802 * 179.72917 * 19 18 8 21 21 H 1.09002 * 109.47117 * 60.00783 * 1 2 3 22 22 H 1.09006 * 109.46587 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47538 * 300.00199 * 1 2 3 24 24 H 1.09002 * 109.47382 * 179.97438 * 7 6 5 25 25 H 1.09001 * 109.46938 * 59.99678 * 7 6 5 26 26 H 1.09004 * 109.46926 * 299.99799 * 7 6 5 27 27 H 1.08998 * 109.46878 * 40.00197 * 9 8 5 28 28 H 1.08998 * 109.46876 * 160.00233 * 9 8 5 29 29 H 0.96999 * 120.00465 * 179.97438 * 13 12 10 30 30 H 1.07994 * 120.72385 * 180.26602 * 18 8 5 31 31 H 1.09006 * 109.47173 * 270.01705 * 20 19 18 32 32 H 1.09001 * 109.47237 * 30.02032 * 20 19 18 33 33 H 1.09003 * 109.47281 * 150.02319 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3173 2.3144 -0.0005 5 6 1.8780 3.5129 0.0000 6 8 1.0944 4.6204 -0.0011 7 6 -0.3197 4.4147 -0.0022 8 6 3.2592 3.6491 -0.0042 9 6 3.8902 5.0176 -0.0093 10 6 3.8727 5.5736 -1.4099 11 1 3.4468 4.9941 -2.2156 12 6 4.3994 6.8225 -1.6624 13 7 4.9176 7.5284 -0.6812 14 14 4.3769 7.5120 -3.3984 15 1 3.7432 6.5289 -4.3133 16 1 3.6009 8.7779 -3.4182 17 1 5.7686 7.7775 -3.8436 18 6 4.0513 2.5123 0.0017 19 6 3.4310 1.2731 0.0012 20 6 4.2525 0.0097 0.0013 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.8273 5.3793 -0.0025 25 1 -0.6060 3.8542 0.8878 26 1 -0.6046 3.8535 -0.8922 27 1 3.3293 5.6788 0.6512 28 1 4.9203 4.9440 0.3394 29 1 5.2884 8.4069 -0.8589 30 1 5.1284 2.5903 0.0030 31 1 4.4514 -0.2945 -1.0264 32 1 5.1963 0.1901 0.5160 33 1 3.7040 -0.7803 0.5143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:48 Heat of formation + Delta-G solvation = -49.643180 kcal Electronic energy + Delta-G solvation = -16885.336839 eV Core-core repulsion = 14104.867186 eV Total energy + Delta-G solvation = -2780.469653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.43594 -38.42526 -36.72523 -33.54946 -32.75631 -31.42750 -27.74067 -27.41348 -26.96797 -25.22471 -23.29780 -22.08750 -20.32180 -18.39373 -17.48309 -16.36801 -15.85344 -15.41478 -15.04163 -14.62268 -14.57439 -13.58400 -13.38350 -13.32001 -12.86536 -12.44242 -12.17595 -12.01927 -11.81661 -11.55911 -11.35194 -11.23425 -11.03185 -10.72231 -10.48312 -10.11831 -9.80787 -9.50151 -9.15123 -8.80454 -8.35734 -7.23414 -5.97365 -3.99737 1.78916 1.91951 3.32812 3.38719 3.40149 3.45435 3.72924 4.30054 4.51928 4.77389 5.30529 5.34860 5.40740 5.41646 5.42980 5.61869 5.65459 5.66789 5.81592 5.83263 5.93535 5.96651 6.16058 6.43266 6.53765 6.85695 7.07198 7.33238 7.59556 7.74507 7.95842 7.97330 8.31733 8.39233 9.03324 9.62614 11.12478 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.007374 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.812724 B = 3796.443878 C = 4310.593918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.310 6.310 3 C 0.322 3.678 4 N -0.595 5.595 5 C 0.346 3.654 6 O -0.279 6.279 7 C 0.041 3.959 8 C -0.128 4.128 9 C 0.066 3.934 10 C -0.501 4.501 11 H 0.053 0.947 12 C 0.058 3.942 13 N -0.895 5.895 14 Si 0.893 3.107 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.284 1.284 18 C -0.028 4.028 19 C -0.194 4.194 20 C -0.088 4.088 21 H 0.053 0.947 22 H 0.089 0.911 23 H 0.053 0.947 24 H 0.091 0.909 25 H 0.049 0.951 26 H 0.050 0.950 27 H 0.035 0.965 28 H 0.029 0.971 29 H 0.260 0.740 30 H 0.143 0.857 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.908 -12.239 2.222 14.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.218 6.218 3 C 0.145 3.855 4 N -0.333 5.333 5 C 0.168 3.832 6 O -0.185 6.185 7 C -0.055 4.055 8 C -0.131 4.131 9 C 0.028 3.972 10 C -0.539 4.539 11 H 0.072 0.928 12 C -0.142 4.142 13 N -0.535 5.535 14 Si 0.720 3.280 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.053 4.053 19 C -0.197 4.197 20 C -0.145 4.145 21 H 0.072 0.928 22 H 0.107 0.893 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.070 0.930 30 H 0.161 0.839 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.580 -12.109 2.256 14.463 hybrid contribution 0.211 0.552 -1.006 1.167 sum -7.369 -11.557 1.250 13.764 Atomic orbital electron populations 1.22706 0.78373 1.02044 1.02037 1.86184 1.21921 1.24957 1.88774 1.18929 0.88433 0.83114 0.94993 1.66654 1.41650 0.98636 1.26341 1.19274 0.88783 0.82971 0.92171 1.86493 1.17877 1.26857 1.87269 1.22736 0.79392 1.02100 1.01236 1.20634 0.89938 0.99913 1.02566 1.18104 0.95412 0.85681 0.97977 1.21037 1.38470 1.01299 0.93135 0.92831 1.24959 0.95460 0.96829 0.96991 1.69958 1.40243 1.12114 1.31178 0.86522 0.77624 0.78974 0.84832 1.19835 1.20991 1.21002 1.21099 1.00289 0.89350 0.94567 1.19645 0.90707 0.96872 1.12465 1.20409 0.98402 0.93995 1.01728 0.92804 0.89296 0.92851 0.89105 0.93279 0.93104 0.94663 0.95302 0.93005 0.83931 0.92005 0.91926 0.91786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 10.38 101.05 1.05 1.59 16 2 O -0.31 -4.89 9.53 -18.73 -0.18 -5.07 16 3 C 0.32 5.88 7.46 -17.14 -0.13 5.75 16 4 N -0.59 -11.60 8.06 -13.40 -0.11 -11.70 16 5 C 0.35 7.51 7.46 -17.14 -0.13 7.38 16 6 O -0.28 -6.02 9.72 -18.70 -0.18 -6.20 16 7 C 0.04 0.66 10.38 101.05 1.05 1.71 16 8 C -0.13 -2.88 5.10 -104.30 -0.53 -3.42 16 9 C 0.07 1.72 4.79 -29.04 -0.14 1.58 16 10 C -0.50 -14.27 9.09 -34.44 -0.31 -14.58 16 11 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 12 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 13 N -0.90 -26.67 13.29 55.43 0.74 -25.93 16 14 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 15 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 18 C -0.03 -0.55 9.48 -39.34 -0.37 -0.92 16 19 C -0.19 -3.41 5.91 -104.31 -0.62 -4.02 16 20 C -0.09 -1.20 9.81 36.00 0.35 -0.85 16 21 H 0.05 0.68 8.10 -51.93 -0.42 0.26 16 22 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 23 H 0.05 0.65 8.10 -51.93 -0.42 0.23 16 24 H 0.09 1.22 8.14 -51.93 -0.42 0.79 16 25 H 0.05 0.72 8.10 -51.93 -0.42 0.30 16 26 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 27 H 0.04 0.99 7.86 -51.93 -0.41 0.58 16 28 H 0.03 0.77 8.03 -51.93 -0.42 0.35 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.14 2.49 8.06 -52.49 -0.42 2.06 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 33 H 0.06 0.82 7.54 -51.93 -0.39 0.43 16 LS Contribution 289.25 15.07 4.36 4.36 Total: -1.00 -31.70 289.25 -4.82 -36.52 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: -4.55 Total: -4.63 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: 0.12 Total: -4.20 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.63 Total: -37.64 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: -0.36 Total: -11.27 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.70 -4.82 -36.52 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.120 kcal (2) G-P(sol) polarization free energy of solvation -31.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds