Wall clock time and date at job start Sun Mar 29 2020 22:05:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35677 * 116.99804 * 2 1 4 4 N 1.32345 * 119.64962 * 359.97438 * 3 2 1 5 5 C 1.32315 * 121.57771 * 179.97438 * 4 3 2 6 6 O 1.35668 * 119.65083 * 179.97438 * 5 4 3 7 7 C 1.42903 * 117.00216 * 0.02562 * 6 5 4 8 8 C 1.38798 * 120.69963 * 0.25128 * 5 4 3 9 9 C 1.50703 * 120.38345 * 179.74742 * 8 5 4 10 10 C 1.50696 * 109.47079 * 279.99905 * 9 8 5 11 11 H 1.07994 * 120.00120 * 0.02562 * 10 9 8 12 12 C 1.37878 * 119.99843 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00244 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 119.99871 * 180.02562 * 12 10 9 15 15 H 1.48494 * 109.47104 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47051 * 120.00913 * 14 12 10 17 17 H 1.48503 * 109.47071 * 240.00411 * 14 12 10 18 18 C 1.38545 * 119.23532 * 359.49618 * 8 5 4 19 19 C 1.38576 * 118.54435 * 0.49563 * 18 8 5 20 20 C 1.50696 * 120.37802 * 179.72917 * 19 18 8 21 21 H 1.09002 * 109.47117 * 60.00783 * 1 2 3 22 22 H 1.09006 * 109.46587 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47538 * 300.00199 * 1 2 3 24 24 H 1.09002 * 109.47382 * 179.97438 * 7 6 5 25 25 H 1.09001 * 109.46938 * 59.99678 * 7 6 5 26 26 H 1.09004 * 109.46926 * 299.99799 * 7 6 5 27 27 H 1.08998 * 109.46878 * 40.00197 * 9 8 5 28 28 H 1.08998 * 109.46876 * 160.00233 * 9 8 5 29 29 H 0.96999 * 120.00465 * 179.97438 * 13 12 10 30 30 H 1.07994 * 120.72385 * 180.26602 * 18 8 5 31 31 H 1.09006 * 109.47173 * 270.01705 * 20 19 18 32 32 H 1.09001 * 109.47237 * 30.02032 * 20 19 18 33 33 H 1.09003 * 109.47281 * 150.02319 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2089 0.0000 4 7 1.3173 2.3144 -0.0005 5 6 1.8780 3.5129 0.0000 6 8 1.0944 4.6204 -0.0011 7 6 -0.3197 4.4147 -0.0022 8 6 3.2592 3.6491 -0.0042 9 6 3.8902 5.0176 -0.0093 10 6 3.8727 5.5736 -1.4099 11 1 3.4468 4.9941 -2.2156 12 6 4.3994 6.8225 -1.6624 13 7 4.9176 7.5284 -0.6812 14 14 4.3769 7.5120 -3.3984 15 1 3.7432 6.5289 -4.3133 16 1 3.6009 8.7779 -3.4182 17 1 5.7686 7.7775 -3.8436 18 6 4.0513 2.5123 0.0017 19 6 3.4310 1.2731 0.0012 20 6 4.2525 0.0097 0.0013 21 1 -0.3633 0.5137 -0.8901 22 1 -0.3633 -1.0278 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.8273 5.3793 -0.0025 25 1 -0.6060 3.8542 0.8878 26 1 -0.6046 3.8535 -0.8922 27 1 3.3293 5.6788 0.6512 28 1 4.9203 4.9440 0.3394 29 1 5.2884 8.4069 -0.8589 30 1 5.1284 2.5903 0.0030 31 1 4.4514 -0.2945 -1.0264 32 1 5.1963 0.1901 0.5160 33 1 3.7040 -0.7803 0.5143 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057967.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:05:48 Heat of formation + Delta-G solvation = -72.339409 kcal Electronic energy + Delta-G solvation = -16886.321022 eV Core-core repulsion = 14104.867186 eV Total energy + Delta-G solvation = -2781.453835 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.90470 -39.82141 -38.16030 -35.53878 -34.17061 -33.24909 -29.31816 -28.76176 -28.32799 -26.60249 -25.21356 -23.55699 -21.95278 -19.80368 -18.90503 -18.50159 -17.26307 -16.91633 -16.55373 -16.40597 -15.85711 -15.16882 -14.72586 -14.62400 -14.31525 -14.25079 -13.58954 -13.46700 -13.36766 -12.96189 -12.76683 -12.69472 -12.62396 -12.37219 -12.31492 -11.69282 -11.66466 -11.33423 -10.77262 -10.54530 -10.39528 -8.79450 -8.14060 -6.26573 0.29039 0.36940 1.39594 1.40183 1.53168 2.08266 2.33312 2.41867 2.80677 3.15355 3.36665 3.99614 4.04599 4.30495 4.40597 4.43042 4.44207 4.46772 4.52156 4.68847 4.75514 4.79066 4.92534 4.97082 5.21812 5.36050 5.40243 5.60041 5.71724 5.77477 5.96559 6.21721 6.51670 6.78752 6.84439 7.40088 8.94259 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.007374 C = 0.006494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.812724 B = 3796.443878 C = 4310.593918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.307 6.307 3 C 0.321 3.679 4 N -0.591 5.591 5 C 0.332 3.668 6 O -0.313 6.313 7 C 0.038 3.962 8 C -0.166 4.166 9 C 0.080 3.920 10 C -0.515 4.515 11 H 0.045 0.955 12 C 0.007 3.993 13 N -0.929 5.929 14 Si 0.961 3.039 15 H -0.270 1.270 16 H -0.277 1.277 17 H -0.273 1.273 18 C -0.025 4.025 19 C -0.190 4.190 20 C -0.084 4.084 21 H 0.049 0.951 22 H 0.129 0.871 23 H 0.052 0.948 24 H 0.113 0.887 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.002 0.998 28 H 0.012 0.988 29 H 0.265 0.735 30 H 0.157 0.843 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.417 -14.109 1.352 15.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.215 6.215 3 C 0.144 3.856 4 N -0.330 5.330 5 C 0.155 3.845 6 O -0.219 6.219 7 C -0.057 4.057 8 C -0.169 4.169 9 C 0.043 3.957 10 C -0.553 4.553 11 H 0.063 0.937 12 C -0.191 4.191 13 N -0.570 5.570 14 Si 0.786 3.214 15 H -0.195 1.195 16 H -0.203 1.203 17 H -0.198 1.198 18 C -0.050 4.050 19 C -0.193 4.193 20 C -0.141 4.141 21 H 0.068 0.932 22 H 0.147 0.853 23 H 0.071 0.929 24 H 0.131 0.869 25 H 0.079 0.921 26 H 0.073 0.927 27 H 0.020 0.980 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.175 0.825 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.105 -13.999 1.390 16.235 hybrid contribution 0.272 0.995 -0.686 1.239 sum -7.833 -13.004 0.704 15.197 Atomic orbital electron populations 1.23025 0.76315 1.04635 1.01777 1.86207 1.23899 1.23197 1.88157 1.19323 0.89119 0.83605 0.93580 1.66690 1.41567 0.98244 1.26500 1.19267 0.88624 0.83706 0.92863 1.86438 1.20359 1.27698 1.87431 1.23001 0.76975 1.03810 1.01943 1.20420 0.91006 0.98944 1.06572 1.17740 0.94122 0.87590 0.96251 1.21280 1.38372 1.01725 0.93961 0.93710 1.25820 0.94934 0.97100 1.01247 1.70072 1.40952 1.12592 1.33380 0.85465 0.78111 0.78202 0.79663 1.19455 1.20301 1.19839 1.21281 1.00880 0.89228 0.93571 1.20045 0.91046 0.97666 1.10555 1.20494 0.98662 0.92041 1.02950 0.93245 0.85326 0.92930 0.86853 0.92134 0.92690 0.98024 0.96921 0.92646 0.82545 0.90753 0.90130 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.80 10.38 113.37 1.18 1.98 16 2 O -0.31 -8.81 9.53 -89.94 -0.86 -9.67 16 3 C 0.32 11.20 7.46 84.74 0.63 11.83 16 4 N -0.59 -22.68 8.06 -421.98 -3.40 -26.08 16 5 C 0.33 14.71 7.46 84.75 0.63 15.34 16 6 O -0.31 -13.86 9.72 -89.84 -0.87 -14.73 16 7 C 0.04 1.18 10.38 113.37 1.18 2.36 16 8 C -0.17 -7.73 5.10 -19.66 -0.10 -7.83 16 9 C 0.08 4.42 4.79 29.10 0.14 4.56 16 10 C -0.52 -30.20 9.09 25.60 0.23 -29.97 16 11 H 0.04 2.64 7.74 -2.91 -0.02 2.62 16 12 C 0.01 0.39 5.46 84.65 0.46 0.86 16 13 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 14 Si 0.96 45.25 29.54 68.60 2.03 47.27 16 15 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 16 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 C -0.03 -0.96 9.48 22.42 0.21 -0.75 16 19 C -0.19 -6.35 5.91 -19.66 -0.12 -6.46 16 20 C -0.08 -2.03 9.81 71.23 0.70 -1.33 16 21 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 22 H 0.13 1.77 8.14 -2.38 -0.02 1.75 16 23 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 24 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 25 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 26 H 0.05 1.65 8.10 -2.38 -0.02 1.64 16 27 H 0.00 0.09 7.86 -2.39 -0.02 0.07 16 28 H 0.01 0.71 8.03 -2.39 -0.02 0.69 16 29 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 30 H 0.16 5.39 8.06 -2.91 -0.02 5.36 16 31 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 32 H 0.08 1.67 8.09 -2.39 -0.02 1.65 16 33 H 0.08 1.67 7.54 -2.39 -0.02 1.65 16 Total: -1.00 -69.47 289.25 3.42 -66.05 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: 1.09 Total: 2.90 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: 5.15 Total: -9.42 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -3.12 Total: -82.41 kcal Atomic # 8 Polarization: -22.67 SS G_CDS: -1.73 Total: -24.40 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -69.47 3.42 -66.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057967.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.289 kcal (2) G-P(sol) polarization free energy of solvation -69.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds