Wall clock time and date at job start Sun Mar 29 2020 21:38:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99807 * 2 1 4 4 C 1.39197 * 119.71071 * 179.97438 * 3 2 1 5 5 C 1.38275 * 119.09099 * 179.97438 * 4 3 2 6 6 C 1.38906 * 118.51534 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.33045 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46805 * 90.00174 * 7 6 5 9 9 C 1.53000 * 109.46651 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46851 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00485 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00287 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99982 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00465 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47141 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47631 * 120.00102 * 14 12 10 17 17 H 1.48508 * 109.47320 * 240.00089 * 14 12 10 18 18 C 1.38034 * 119.33982 * 0.02562 * 6 5 4 19 19 N 1.31958 * 120.86077 * 0.02562 * 18 6 5 20 20 H 1.09004 * 109.47283 * 60.00251 * 1 2 3 21 21 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47718 * 299.99731 * 1 2 3 23 23 H 1.07994 * 120.45571 * 0.27222 * 4 3 2 24 24 H 1.07996 * 120.73880 * 180.02562 * 5 4 3 25 25 H 1.08999 * 109.47427 * 209.99602 * 7 6 5 26 26 H 1.08990 * 109.47315 * 330.00213 * 7 6 5 27 27 H 1.08996 * 109.46900 * 299.99429 * 8 7 6 28 28 H 1.08998 * 109.47007 * 60.00240 * 8 7 6 29 29 H 1.08990 * 109.47821 * 299.99770 * 9 8 7 30 30 H 1.09002 * 109.47520 * 60.00494 * 9 8 7 31 31 H 0.96993 * 120.00656 * 179.97438 * 13 12 10 32 32 H 1.07992 * 119.56977 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5435 2.1172 0.0005 5 6 3.8399 3.4678 0.0000 6 6 2.7899 4.3771 -0.0005 7 6 3.0661 5.8586 -0.0017 8 6 3.1593 6.3588 -1.4447 9 6 3.4392 7.8630 -1.4459 10 6 3.5316 8.3555 -2.8671 11 1 3.4040 7.6648 -3.6875 12 6 3.7802 9.6879 -3.1202 13 7 3.9371 10.5289 -2.1213 14 14 3.8940 10.2987 -4.8818 15 1 3.6827 9.1624 -5.8143 16 1 2.8534 11.3319 -5.1158 17 1 5.2373 10.8871 -5.1159 18 6 1.4909 3.9103 0.0000 19 7 1.2369 2.6154 0.0016 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 4.3355 1.3830 -0.0035 24 1 4.8649 3.8080 0.0000 25 1 2.2579 6.3793 0.5118 26 1 4.0077 6.0530 0.5117 27 1 3.9676 5.8381 -1.9582 28 1 2.2177 6.1644 -1.9581 29 1 2.6308 8.3834 -0.9325 30 1 4.3807 8.0578 -0.9323 31 1 4.1123 11.4661 -2.2992 32 1 0.6717 4.6140 -0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:11 Heat of formation + Delta-G solvation = 4.239550 kcal Electronic energy + Delta-G solvation = -13665.062451 eV Core-core repulsion = 11329.682199 eV Total energy + Delta-G solvation = -2335.380251 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.03906 -35.16751 -32.97992 -32.07115 -30.59043 -29.03327 -27.03849 -24.06756 -23.58309 -21.73608 -20.12128 -18.09750 -16.54445 -16.34796 -15.36758 -14.91289 -14.49401 -14.34902 -13.89698 -13.79838 -13.44608 -13.24284 -12.62923 -12.37088 -12.19571 -11.70769 -11.30239 -10.84715 -10.80836 -10.66522 -10.51215 -9.83736 -9.80783 -9.66111 -9.52886 -9.25727 -9.01349 -8.36573 -7.56818 -6.01493 -4.03794 1.04488 1.29343 1.40169 2.15157 3.30123 3.37757 3.42155 3.73498 4.45118 4.56418 4.93081 4.97520 5.05506 5.06134 5.11355 5.27643 5.34481 5.57645 5.63197 5.86849 5.97208 6.03823 6.23592 6.32869 6.66852 6.73561 6.82593 7.08400 7.65901 7.77027 7.79428 7.98537 8.41317 9.03598 9.60551 11.09795 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.050652 B = 0.003906 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.663781 B = 7166.228188 C = 7301.286305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.097 6.097 3 C 0.103 3.897 4 C -0.146 4.146 5 C -0.062 4.062 6 C -0.115 4.115 7 C -0.080 4.080 8 C -0.103 4.103 9 C 0.020 3.980 10 C -0.520 4.520 11 H 0.055 0.945 12 C 0.056 3.944 13 N -0.896 5.896 14 Si 0.891 3.109 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.111 3.889 19 N -0.489 5.489 20 H 0.086 0.914 21 H 0.099 0.901 22 H 0.085 0.915 23 H 0.136 0.864 24 H 0.140 0.860 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.049 0.951 29 H 0.017 0.983 30 H 0.016 0.984 31 H 0.260 0.740 32 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.736 -18.269 6.077 19.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S 0.141 5.859 3 C -0.145 4.145 4 C -0.171 4.171 5 C -0.089 4.089 6 C -0.120 4.120 7 C -0.119 4.119 8 C -0.141 4.141 9 C -0.017 4.017 10 C -0.559 4.559 11 H 0.073 0.927 12 C -0.145 4.145 13 N -0.535 5.535 14 Si 0.719 3.281 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.049 4.049 19 N -0.201 5.201 20 H 0.105 0.895 21 H 0.118 0.882 22 H 0.104 0.896 23 H 0.153 0.847 24 H 0.158 0.842 25 H 0.091 0.909 26 H 0.090 0.910 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.035 0.965 31 H 0.069 0.931 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.951 -19.428 6.114 20.747 hybrid contribution 0.126 1.893 -0.988 2.139 sum -3.825 -17.535 5.126 18.665 Atomic orbital electron populations 1.23394 0.93659 1.05735 1.06711 1.85350 1.07981 1.00140 1.92432 1.22825 0.92238 0.97802 1.01649 1.21593 0.95555 0.96837 1.03151 1.21481 1.00033 0.91928 0.95431 1.21192 0.93912 0.98256 0.98602 1.20759 1.02503 0.88303 1.00286 1.21648 1.00559 0.99843 0.92044 1.19125 0.97001 0.88500 0.97056 1.21298 1.48409 0.93554 0.92599 0.92691 1.25026 0.95401 0.97029 0.97028 1.69968 1.49356 1.03612 1.30588 0.86553 0.77637 0.78824 0.85103 1.19748 1.20989 1.21002 1.22628 0.96045 0.91016 0.95191 1.67954 1.34879 1.02811 1.14465 0.89507 0.88196 0.89584 0.84661 0.84211 0.90910 0.90986 0.93296 0.93262 0.96487 0.96526 0.93054 0.82402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.16 10.02 101.05 1.01 -0.14 16 2 S -0.10 -1.10 22.55 -107.50 -2.42 -3.52 16 3 C 0.10 1.42 7.00 -16.92 -0.12 1.31 16 4 C -0.15 -1.86 9.84 -39.21 -0.39 -2.25 16 5 C -0.06 -0.82 9.85 -39.32 -0.39 -1.21 16 6 C -0.12 -1.69 5.15 -104.45 -0.54 -2.22 16 7 C -0.08 -1.29 5.37 -27.88 -0.15 -1.44 16 8 C -0.10 -2.06 5.14 -26.73 -0.14 -2.20 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 11 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 12 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 13 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 14 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 18 C 0.11 1.61 10.85 -17.57 -0.19 1.42 16 19 N -0.49 -7.20 9.43 -12.11 -0.11 -7.32 16 20 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 21 H 0.10 0.67 8.14 -51.92 -0.42 0.25 16 22 H 0.09 0.81 8.14 -51.92 -0.42 0.39 16 23 H 0.14 1.42 8.06 -52.49 -0.42 0.99 16 24 H 0.14 1.60 8.06 -52.49 -0.42 1.18 16 25 H 0.07 1.12 8.09 -51.93 -0.42 0.70 16 26 H 0.07 1.11 8.09 -51.93 -0.42 0.69 16 27 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 28 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 32 H 0.16 2.03 8.06 -52.49 -0.42 1.61 16 LS Contribution 292.27 15.07 4.40 4.40 Total: -1.00 -30.73 292.27 -8.47 -39.20 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: -4.61 Total: -3.46 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.44 Total: -19.87 kcal Atomic # 7 Polarization: -34.01 SS G_CDS: 0.62 Total: -33.39 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Atomic # 16 Polarization: -1.10 SS G_CDS: -2.42 Total: -3.52 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -30.73 -8.47 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.441 kcal (2) G-P(sol) polarization free energy of solvation -30.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds