Wall clock time and date at job start Sun Mar 29 2020 21:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.76203 * 102.99807 * 2 1 4 4 C 1.39197 * 119.71071 * 179.97438 * 3 2 1 5 5 C 1.38275 * 119.09099 * 179.97438 * 4 3 2 6 6 C 1.38906 * 118.51534 * 0.02562 * 5 4 3 7 7 C 1.50697 * 120.33045 * 180.02562 * 6 5 4 8 8 C 1.53005 * 109.46805 * 90.00174 * 7 6 5 9 9 C 1.53000 * 109.46651 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46851 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00485 * 359.97438 * 10 9 8 12 12 C 1.37878 * 120.00287 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99982 * 0.02562 * 12 10 9 14 14 Si 1.86794 * 120.00465 * 180.02562 * 12 10 9 15 15 H 1.48502 * 109.47141 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47631 * 120.00102 * 14 12 10 17 17 H 1.48508 * 109.47320 * 240.00089 * 14 12 10 18 18 C 1.38034 * 119.33982 * 0.02562 * 6 5 4 19 19 N 1.31958 * 120.86077 * 0.02562 * 18 6 5 20 20 H 1.09004 * 109.47283 * 60.00251 * 1 2 3 21 21 H 1.09003 * 109.47286 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47718 * 299.99731 * 1 2 3 23 23 H 1.07994 * 120.45571 * 0.27222 * 4 3 2 24 24 H 1.07996 * 120.73880 * 180.02562 * 5 4 3 25 25 H 1.08999 * 109.47427 * 209.99602 * 7 6 5 26 26 H 1.08990 * 109.47315 * 330.00213 * 7 6 5 27 27 H 1.08996 * 109.46900 * 299.99429 * 8 7 6 28 28 H 1.08998 * 109.47007 * 60.00240 * 8 7 6 29 29 H 1.08990 * 109.47821 * 299.99770 * 9 8 7 30 30 H 1.09002 * 109.47520 * 60.00494 * 9 8 7 31 31 H 0.96993 * 120.00656 * 179.97438 * 13 12 10 32 32 H 1.07992 * 119.56977 * 180.02562 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7169 0.0000 4 6 3.5435 2.1172 0.0005 5 6 3.8399 3.4678 0.0000 6 6 2.7899 4.3771 -0.0005 7 6 3.0661 5.8586 -0.0017 8 6 3.1593 6.3588 -1.4447 9 6 3.4392 7.8630 -1.4459 10 6 3.5316 8.3555 -2.8671 11 1 3.4040 7.6648 -3.6875 12 6 3.7802 9.6879 -3.1202 13 7 3.9371 10.5289 -2.1213 14 14 3.8940 10.2987 -4.8818 15 1 3.6827 9.1624 -5.8143 16 1 2.8534 11.3319 -5.1158 17 1 5.2373 10.8871 -5.1159 18 6 1.4909 3.9103 0.0000 19 7 1.2369 2.6154 0.0016 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 4.3355 1.3830 -0.0035 24 1 4.8649 3.8080 0.0000 25 1 2.2579 6.3793 0.5118 26 1 4.0077 6.0530 0.5117 27 1 3.9676 5.8381 -1.9582 28 1 2.2177 6.1644 -1.9581 29 1 2.6308 8.3834 -0.9325 30 1 4.3807 8.0578 -0.9323 31 1 4.1123 11.4661 -2.2992 32 1 0.6717 4.6140 -0.0008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065005.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:10 Heat of formation + Delta-G solvation = -12.419101 kcal Electronic energy + Delta-G solvation = -13665.784824 eV Core-core repulsion = 11329.682199 eV Total energy + Delta-G solvation = -2336.102625 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.09830 -36.73297 -34.80716 -33.24029 -32.12186 -29.80724 -28.67332 -25.75587 -24.62888 -23.18603 -21.76458 -19.06211 -18.47827 -17.63370 -16.63183 -16.30266 -15.87410 -15.49067 -15.39937 -14.80264 -14.42018 -14.33943 -14.14041 -13.84527 -13.39886 -13.24616 -12.87895 -12.60667 -12.55908 -12.33495 -11.55580 -11.51917 -11.37050 -11.25356 -10.77696 -10.60623 -10.55013 -10.49949 -8.51067 -8.19732 -6.30568 -0.02410 0.25531 0.49941 1.31480 1.39517 1.40102 1.53115 2.40880 2.66552 3.13208 3.55184 3.84254 3.97781 4.05671 4.16770 4.31827 4.35309 4.42276 4.53384 4.69662 4.80028 4.91920 4.99019 5.01315 5.22976 5.25225 5.38072 5.53643 5.62768 5.78257 5.87845 6.26601 6.71261 6.86826 7.38643 8.91721 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.050652 B = 0.003906 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 552.663781 B = 7166.228188 C = 7301.286305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.089 6.089 3 C 0.088 3.912 4 C -0.148 4.148 5 C -0.062 4.062 6 C -0.129 4.129 7 C -0.067 4.067 8 C -0.089 4.089 9 C 0.023 3.977 10 C -0.544 4.544 11 H 0.056 0.944 12 C 0.000 4.000 13 N -0.932 5.932 14 Si 0.962 3.038 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.277 1.277 18 C 0.102 3.898 19 N -0.504 5.504 20 H 0.080 0.920 21 H 0.128 0.872 22 H 0.082 0.918 23 H 0.159 0.841 24 H 0.158 0.842 25 H 0.075 0.925 26 H 0.077 0.923 27 H 0.048 0.952 28 H 0.046 0.954 29 H -0.005 1.005 30 H -0.004 1.004 31 H 0.264 0.736 32 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.724 -19.712 5.460 20.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S 0.149 5.851 3 C -0.160 4.160 4 C -0.173 4.173 5 C -0.089 4.089 6 C -0.133 4.133 7 C -0.106 4.106 8 C -0.127 4.127 9 C -0.014 4.014 10 C -0.582 4.582 11 H 0.074 0.926 12 C -0.198 4.198 13 N -0.572 5.572 14 Si 0.787 3.213 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.203 1.203 18 C -0.057 4.057 19 N -0.216 5.216 20 H 0.099 0.901 21 H 0.146 0.854 22 H 0.101 0.899 23 H 0.177 0.823 24 H 0.175 0.825 25 H 0.094 0.906 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.014 0.986 30 H 0.015 0.985 31 H 0.072 0.928 32 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -3.943 -20.889 5.500 21.958 hybrid contribution 0.097 2.256 -0.761 2.383 sum -3.846 -18.633 4.738 19.607 Atomic orbital electron populations 1.23484 0.91996 1.07438 1.06243 1.85305 1.09805 0.98080 1.91911 1.23345 0.92765 0.99003 1.00891 1.21890 0.95930 0.97138 1.02392 1.21739 1.00584 0.92094 0.94453 1.21015 0.94531 0.97280 1.00501 1.20523 1.03011 0.89549 0.97469 1.21406 1.00210 0.96108 0.94959 1.19041 0.95081 0.91990 0.95336 1.21746 1.48382 0.94092 0.93947 0.92590 1.25944 0.94903 0.97295 1.01609 1.70087 1.50136 1.04057 1.32960 0.85444 0.77877 0.78372 0.79635 1.18848 1.20330 1.20274 1.22815 0.96400 0.91401 0.95120 1.67999 1.35428 1.02910 1.15276 0.90124 0.85395 0.89850 0.82298 0.82479 0.90629 0.90453 0.93298 0.93544 0.98633 0.98549 0.92759 0.81617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.01 10.02 113.37 1.14 -0.88 16 2 S -0.09 -1.84 22.55 -56.49 -1.27 -3.11 16 3 C 0.09 2.30 7.00 84.83 0.59 2.89 16 4 C -0.15 -3.50 9.84 22.51 0.22 -3.28 16 5 C -0.06 -1.54 9.85 22.44 0.22 -1.32 16 6 C -0.13 -3.64 5.15 -19.75 -0.10 -3.74 16 7 C -0.07 -2.13 5.37 29.85 0.16 -1.97 16 8 C -0.09 -3.56 5.14 30.60 0.16 -3.41 16 9 C 0.02 1.17 4.97 29.85 0.15 1.32 16 10 C -0.54 -31.02 9.11 25.60 0.23 -30.78 16 11 H 0.06 3.10 7.74 -2.91 -0.02 3.08 16 12 C 0.00 0.01 5.46 84.65 0.46 0.47 16 13 N -0.93 -56.48 13.29 21.45 0.28 -56.20 16 14 Si 0.96 44.35 29.54 68.60 2.03 46.38 16 15 H -0.26 -11.71 7.11 99.48 0.71 -11.01 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 17 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 18 C 0.10 2.88 10.85 84.63 0.92 3.80 16 19 N -0.50 -14.32 9.43 -192.21 -1.81 -16.13 16 20 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 21 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 23 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 24 H 0.16 3.28 8.06 -2.91 -0.02 3.25 16 25 H 0.08 2.32 8.09 -2.39 -0.02 2.30 16 26 H 0.08 2.34 8.09 -2.39 -0.02 2.32 16 27 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 28 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 30 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.17 4.22 8.06 -2.91 -0.02 4.19 16 Total: -1.00 -65.25 292.27 4.46 -60.80 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.08 Total: 5.17 kcal Atomic # 6 Polarization: -41.05 SS G_CDS: 4.15 Total: -36.90 kcal Atomic # 7 Polarization: -70.80 SS G_CDS: -1.53 Total: -72.33 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: -1.84 SS G_CDS: -1.27 Total: -3.11 kcal Total: -65.25 4.46 -60.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065005.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.378 kcal (2) G-P(sol) polarization free energy of solvation -65.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds