Wall clock time and date at job start Sun Mar 29 2020 21:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76196 * 102.99887 * 2 1 4 4 C 1.38997 * 120.50130 * 359.97438 * 3 2 1 5 5 N 1.31766 * 120.64912 * 180.02562 * 4 3 2 6 6 C 1.31897 * 121.80519 * 359.68282 * 5 4 3 7 7 C 1.38250 * 120.94254 * 0.58564 * 6 5 4 8 8 C 1.50703 * 120.37700 * 179.72878 * 7 6 5 9 9 C 1.52996 * 109.46946 * 269.72211 * 8 7 6 10 10 C 1.52997 * 109.46947 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 C 1.38511 * 119.24662 * 359.45027 * 7 6 5 20 20 H 1.09003 * 109.47173 * 60.00112 * 1 2 3 21 21 H 1.09002 * 109.47467 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47527 * 299.99606 * 1 2 3 23 23 H 1.07999 * 119.67263 * 0.02562 * 4 3 2 24 24 H 1.08004 * 119.52992 * 180.31131 * 6 5 4 25 25 H 1.08992 * 109.46894 * 149.71930 * 8 7 6 26 26 H 1.08996 * 109.46805 * 29.72080 * 8 7 6 27 27 H 1.09001 * 109.47372 * 60.00128 * 9 8 7 28 28 H 1.09004 * 109.47108 * 299.99872 * 9 8 7 29 29 H 1.09001 * 109.46832 * 59.99979 * 10 9 8 30 30 H 1.09000 * 109.47611 * 300.00276 * 10 9 8 31 31 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 32 32 H 1.08006 * 120.82576 * 180.22868 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2021 2.6736 -0.0005 5 7 1.4951 3.9583 -0.0010 6 6 2.7426 4.3867 0.0051 7 6 3.8000 3.4962 0.0003 8 6 5.2204 3.9998 0.0013 9 6 5.7022 4.1699 -1.4408 10 6 7.1440 4.6818 -1.4398 11 6 7.6188 4.8488 -2.8603 12 1 6.9581 4.6138 -3.6816 13 6 8.8966 5.3016 -3.1113 14 7 9.7014 5.5873 -2.1111 15 14 9.4849 5.5093 -4.8721 16 1 8.6138 6.4866 -5.5730 17 1 10.8844 6.0060 -4.8711 18 1 9.4240 4.2008 -5.5718 19 6 3.5392 2.1358 0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.1683 2.3610 -0.0005 24 1 2.9408 5.4484 0.0096 25 1 5.8598 3.2825 0.5158 26 1 5.2650 4.9601 0.5150 27 1 5.0628 4.8872 -1.9553 28 1 5.6575 3.2095 -1.9545 29 1 7.7837 3.9648 -0.9252 30 1 7.1883 5.6422 -0.9262 31 1 10.6003 5.9062 -2.2878 32 1 4.3459 1.4176 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250065800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:13 Heat of formation + Delta-G solvation = 7.980533 kcal Electronic energy + Delta-G solvation = -13703.301553 eV Core-core repulsion = 11368.083523 eV Total energy + Delta-G solvation = -2335.218030 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.09678 -35.19949 -32.97495 -32.13296 -30.79456 -29.27287 -26.94390 -24.00050 -23.70598 -21.78933 -20.14189 -17.43105 -16.85098 -16.57243 -16.20865 -14.65056 -14.50637 -14.33757 -13.88749 -13.77907 -13.64983 -13.07417 -12.90932 -12.36712 -12.17001 -11.71648 -11.28555 -10.93729 -10.80032 -10.78571 -10.52063 -10.46951 -9.74003 -9.59873 -9.31090 -9.19671 -8.82656 -8.34610 -7.62798 -5.99934 -4.02360 0.97257 1.26461 1.27716 2.15180 3.33892 3.38090 3.40869 3.74131 4.40732 4.46555 4.73583 4.74320 4.80073 4.89237 5.07917 5.23948 5.32485 5.35961 5.54079 5.80440 5.91825 5.98987 6.23822 6.28201 6.65487 6.71720 6.82687 7.08973 7.66635 7.80475 7.92161 7.99839 8.42493 9.04459 9.61817 11.11313 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.040113 B = 0.004222 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.867581 B = 6629.666734 C = 6880.852441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.107 6.107 3 C -0.139 4.139 4 C 0.072 3.928 5 N -0.468 5.468 6 C 0.092 3.908 7 C -0.093 4.093 8 C -0.082 4.082 9 C -0.104 4.104 10 C 0.021 3.979 11 C -0.522 4.522 12 H 0.054 0.946 13 C 0.057 3.943 14 N -0.896 5.896 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.058 4.058 20 H 0.085 0.915 21 H 0.109 0.891 22 H 0.084 0.916 23 H 0.150 0.850 24 H 0.160 0.840 25 H 0.073 0.927 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.049 0.951 29 H 0.016 0.984 30 H 0.017 0.983 31 H 0.261 0.739 32 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.944 -9.008 6.067 20.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.133 5.867 3 C -0.253 4.253 4 C -0.091 4.091 5 N -0.176 5.176 6 C -0.067 4.067 7 C -0.096 4.096 8 C -0.120 4.120 9 C -0.141 4.141 10 C -0.016 4.016 11 C -0.560 4.560 12 H 0.072 0.928 13 C -0.144 4.144 14 N -0.535 5.535 15 Si 0.719 3.281 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.202 1.202 19 C -0.089 4.089 20 H 0.104 0.896 21 H 0.127 0.873 22 H 0.103 0.897 23 H 0.167 0.833 24 H 0.177 0.823 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.036 0.964 31 H 0.071 0.929 32 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.822 -9.379 6.102 20.204 hybrid contribution 0.256 0.601 -1.001 1.195 sum -16.566 -8.778 5.101 19.430 Atomic orbital electron populations 1.23681 0.94928 1.07213 1.05792 1.85517 1.06180 1.02335 1.92622 1.22775 0.97852 0.97900 1.06774 1.22681 0.98261 0.88314 0.99874 1.67593 1.22473 1.16408 1.11079 1.22761 0.86950 1.00554 0.96463 1.21172 0.98497 0.93187 0.96783 1.20796 0.89255 1.01465 1.00484 1.21652 0.99995 1.00554 0.91919 1.19115 0.89128 0.96302 0.97050 1.21221 0.98170 1.44063 0.92558 0.92786 1.25016 0.96868 0.95510 0.97014 1.69956 1.07536 1.45378 1.30668 0.86664 0.77716 0.78524 0.85147 1.20234 1.21265 1.20243 1.21149 0.94491 0.95938 0.97323 0.89598 0.87274 0.89667 0.83284 0.82313 0.90878 0.90617 0.93148 0.93269 0.96517 0.96449 0.92944 0.84268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.16 101.05 0.93 -0.07 16 2 S -0.11 -1.14 22.58 -107.50 -2.43 -3.57 16 3 C -0.14 -1.81 6.13 -38.89 -0.24 -2.05 16 4 C 0.07 0.93 10.54 -17.30 -0.18 0.74 16 5 N -0.47 -6.89 10.35 -13.06 -0.14 -7.02 16 6 C 0.09 1.34 10.85 -17.52 -0.19 1.15 16 7 C -0.09 -1.38 5.15 -104.52 -0.54 -1.92 16 8 C -0.08 -1.33 5.37 -27.88 -0.15 -1.48 16 9 C -0.10 -2.09 5.13 -26.73 -0.14 -2.22 16 10 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 11 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16 12 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 14 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16 15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.06 -0.82 9.62 -39.07 -0.38 -1.20 16 20 H 0.09 0.54 7.76 -51.92 -0.40 0.14 16 21 H 0.11 0.54 8.14 -51.92 -0.42 0.12 16 22 H 0.08 0.51 7.77 -51.92 -0.40 0.11 16 23 H 0.15 1.50 5.92 -52.49 -0.31 1.19 16 24 H 0.16 2.05 8.06 -52.48 -0.42 1.62 16 25 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16 26 H 0.08 1.17 8.09 -51.93 -0.42 0.74 16 27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16 LS Contribution 289.10 15.07 4.36 4.36 Total: -1.00 -31.04 289.10 -8.38 -39.42 By element: Atomic # 1 Polarization: 0.95 SS G_CDS: -4.46 Total: -3.50 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: -1.44 Total: -20.23 kcal Atomic # 7 Polarization: -33.80 SS G_CDS: 0.60 Total: -33.20 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.43 Total: -3.57 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.04 -8.38 -39.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.404 kcal (2) G-P(sol) polarization free energy of solvation -31.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds