Wall clock time and date at job start Sun Mar 29 2020 21:38:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 S 1.81398 * 1
3 3 C 1.76196 * 102.99887 * 2 1
4 4 C 1.38997 * 120.50130 * 359.97438 * 3 2 1
5 5 N 1.31766 * 120.64912 * 180.02562 * 4 3 2
6 6 C 1.31897 * 121.80519 * 359.68282 * 5 4 3
7 7 C 1.38250 * 120.94254 * 0.58564 * 6 5 4
8 8 C 1.50703 * 120.37700 * 179.72878 * 7 6 5
9 9 C 1.52996 * 109.46946 * 269.72211 * 8 7 6
10 10 C 1.52997 * 109.46947 * 179.97438 * 9 8 7
11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 8
12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9
13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9
14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10
15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10
16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11
17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11
18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11
19 19 C 1.38511 * 119.24662 * 359.45027 * 7 6 5
20 20 H 1.09003 * 109.47173 * 60.00112 * 1 2 3
21 21 H 1.09002 * 109.47467 * 180.02562 * 1 2 3
22 22 H 1.09004 * 109.47527 * 299.99606 * 1 2 3
23 23 H 1.07999 * 119.67263 * 0.02562 * 4 3 2
24 24 H 1.08004 * 119.52992 * 180.31131 * 6 5 4
25 25 H 1.08992 * 109.46894 * 149.71930 * 8 7 6
26 26 H 1.08996 * 109.46805 * 29.72080 * 8 7 6
27 27 H 1.09001 * 109.47372 * 60.00128 * 9 8 7
28 28 H 1.09004 * 109.47108 * 299.99872 * 9 8 7
29 29 H 1.09001 * 109.46832 * 59.99979 * 10 9 8
30 30 H 1.09000 * 109.47611 * 300.00276 * 10 9 8
31 31 H 0.97004 * 119.99507 * 180.02562 * 14 13 11
32 32 H 1.08006 * 120.82576 * 180.22868 * 19 7 6
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 16 1.8140 0.0000 0.0000
3 6 2.2103 1.7168 0.0000
4 6 1.2021 2.6736 -0.0005
5 7 1.4951 3.9583 -0.0010
6 6 2.7426 4.3867 0.0051
7 6 3.8000 3.4962 0.0003
8 6 5.2204 3.9998 0.0013
9 6 5.7022 4.1699 -1.4408
10 6 7.1440 4.6818 -1.4398
11 6 7.6188 4.8488 -2.8603
12 1 6.9581 4.6138 -3.6816
13 6 8.8966 5.3016 -3.1113
14 7 9.7014 5.5873 -2.1111
15 14 9.4849 5.5093 -4.8721
16 1 8.6138 6.4866 -5.5730
17 1 10.8844 6.0060 -4.8711
18 1 9.4240 4.2008 -5.5718
19 6 3.5392 2.1358 0.0005
20 1 -0.3634 0.5138 -0.8900
21 1 -0.3634 -1.0277 0.0005
22 1 -0.3634 0.5138 0.8900
23 1 0.1683 2.3610 -0.0005
24 1 2.9408 5.4484 0.0096
25 1 5.8598 3.2825 0.5158
26 1 5.2650 4.9601 0.5150
27 1 5.0628 4.8872 -1.9553
28 1 5.6575 3.2095 -1.9545
29 1 7.7837 3.9648 -0.9252
30 1 7.1883 5.6422 -0.9262
31 1 10.6003 5.9062 -2.2878
32 1 4.3459 1.4176 0.0005
RHF calculation, no. of doubly occupied orbitals= 41
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001250065800.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Sun Mar 29 2020 21:38:13
Heat of formation + Delta-G solvation = 7.980533 kcal
Electronic energy + Delta-G solvation = -13703.301553 eV
Core-core repulsion = 11368.083523 eV
Total energy + Delta-G solvation = -2335.218030 eV
No. of doubly occupied orbitals = 41
Molecular weight
(most abundant/longest-lived isotopes) = 237.088 amu
Computer time = 0.28 seconds
Orbital eigenvalues (eV)
-40.09678 -35.19949 -32.97495 -32.13296 -30.79456 -29.27287 -26.94390 -24.00050
-23.70598 -21.78933 -20.14189 -17.43105 -16.85098 -16.57243 -16.20865 -14.65056
-14.50637 -14.33757 -13.88749 -13.77907 -13.64983 -13.07417 -12.90932 -12.36712
-12.17001 -11.71648 -11.28555 -10.93729 -10.80032 -10.78571 -10.52063 -10.46951
-9.74003 -9.59873 -9.31090 -9.19671 -8.82656 -8.34610 -7.62798 -5.99934
-4.02360 0.97257 1.26461 1.27716 2.15180 3.33892 3.38090 3.40869
3.74131 4.40732 4.46555 4.73583 4.74320 4.80073 4.89237 5.07917
5.23948 5.32485 5.35961 5.54079 5.80440 5.91825 5.98987 6.23822
6.28201 6.65487 6.71720 6.82687 7.08973 7.66635 7.80475 7.92161
7.99839 8.42493 9.04459 9.61817 11.11313
Molecular weight = 237.09amu
Principal moments of inertia in cm(-1)
A = 0.040113 B = 0.004222 C = 0.004068
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 697.867581 B = 6629.666734 C = 6880.852441
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 S -0.107 6.107
3 C -0.139 4.139
4 C 0.072 3.928
5 N -0.468 5.468
6 C 0.092 3.908
7 C -0.093 4.093
8 C -0.082 4.082
9 C -0.104 4.104
10 C 0.021 3.979
11 C -0.522 4.522
12 H 0.054 0.946
13 C 0.057 3.943
14 N -0.896 5.896
15 Si 0.892 3.108
16 H -0.277 1.277
17 H -0.287 1.287
18 H -0.277 1.277
19 C -0.058 4.058
20 H 0.085 0.915
21 H 0.109 0.891
22 H 0.084 0.916
23 H 0.150 0.850
24 H 0.160 0.840
25 H 0.073 0.927
26 H 0.075 0.925
27 H 0.050 0.950
28 H 0.049 0.951
29 H 0.016 0.984
30 H 0.017 0.983
31 H 0.261 0.739
32 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.944 -9.008 6.067 20.126
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.316 4.316
2 S 0.133 5.867
3 C -0.253 4.253
4 C -0.091 4.091
5 N -0.176 5.176
6 C -0.067 4.067
7 C -0.096 4.096
8 C -0.120 4.120
9 C -0.141 4.141
10 C -0.016 4.016
11 C -0.560 4.560
12 H 0.072 0.928
13 C -0.144 4.144
14 N -0.535 5.535
15 Si 0.719 3.281
16 H -0.202 1.202
17 H -0.213 1.213
18 H -0.202 1.202
19 C -0.089 4.089
20 H 0.104 0.896
21 H 0.127 0.873
22 H 0.103 0.897
23 H 0.167 0.833
24 H 0.177 0.823
25 H 0.091 0.909
26 H 0.094 0.906
27 H 0.069 0.931
28 H 0.067 0.933
29 H 0.035 0.965
30 H 0.036 0.964
31 H 0.071 0.929
32 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges -16.822 -9.379 6.102 20.204
hybrid contribution 0.256 0.601 -1.001 1.195
sum -16.566 -8.778 5.101 19.430
Atomic orbital electron populations
1.23681 0.94928 1.07213 1.05792 1.85517 1.06180 1.02335 1.92622
1.22775 0.97852 0.97900 1.06774 1.22681 0.98261 0.88314 0.99874
1.67593 1.22473 1.16408 1.11079 1.22761 0.86950 1.00554 0.96463
1.21172 0.98497 0.93187 0.96783 1.20796 0.89255 1.01465 1.00484
1.21652 0.99995 1.00554 0.91919 1.19115 0.89128 0.96302 0.97050
1.21221 0.98170 1.44063 0.92558 0.92786 1.25016 0.96868 0.95510
0.97014 1.69956 1.07536 1.45378 1.30668 0.86664 0.77716 0.78524
0.85147 1.20234 1.21265 1.20243 1.21149 0.94491 0.95938 0.97323
0.89598 0.87274 0.89667 0.83284 0.82313 0.90878 0.90617 0.93148
0.93269 0.96517 0.96449 0.92944 0.84268
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.00 9.16 101.05 0.93 -0.07 16
2 S -0.11 -1.14 22.58 -107.50 -2.43 -3.57 16
3 C -0.14 -1.81 6.13 -38.89 -0.24 -2.05 16
4 C 0.07 0.93 10.54 -17.30 -0.18 0.74 16
5 N -0.47 -6.89 10.35 -13.06 -0.14 -7.02 16
6 C 0.09 1.34 10.85 -17.52 -0.19 1.15 16
7 C -0.09 -1.38 5.15 -104.52 -0.54 -1.92 16
8 C -0.08 -1.33 5.37 -27.88 -0.15 -1.48 16
9 C -0.10 -2.09 5.13 -26.73 -0.14 -2.22 16
10 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16
11 C -0.52 -14.81 9.11 -34.44 -0.31 -15.13 16
12 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16
13 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16
14 N -0.90 -26.92 13.29 55.43 0.74 -26.18 16
15 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16
16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16
17 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16
18 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16
19 C -0.06 -0.82 9.62 -39.07 -0.38 -1.20 16
20 H 0.09 0.54 7.76 -51.92 -0.40 0.14 16
21 H 0.11 0.54 8.14 -51.92 -0.42 0.12 16
22 H 0.08 0.51 7.77 -51.92 -0.40 0.11 16
23 H 0.15 1.50 5.92 -52.49 -0.31 1.19 16
24 H 0.16 2.05 8.06 -52.48 -0.42 1.62 16
25 H 0.07 1.15 8.09 -51.93 -0.42 0.73 16
26 H 0.08 1.17 8.09 -51.93 -0.42 0.74 16
27 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16
28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16
29 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16
30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16
31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16
32 H 0.14 1.86 8.06 -52.48 -0.42 1.43 16
LS Contribution 289.10 15.07 4.36 4.36
Total: -1.00 -31.04 289.10 -8.38 -39.42
By element:
Atomic # 1 Polarization: 0.95 SS G_CDS: -4.46 Total: -3.50 kcal
Atomic # 6 Polarization: -18.79 SS G_CDS: -1.44 Total: -20.23 kcal
Atomic # 7 Polarization: -33.80 SS G_CDS: 0.60 Total: -33.20 kcal
Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal
Atomic # 16 Polarization: -1.14 SS G_CDS: -2.43 Total: -3.57 kcal
Total LS contribution 4.36 Total: 4.36 kcal
Total: -31.04 -8.38 -39.42 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001250065800.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 47.404 kcal
(2) G-P(sol) polarization free energy of solvation -31.039 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.365 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.384 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.424 kcal
(6) G-S(sol) free energy of system = (1) + (5) 7.981 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.28 seconds