Wall clock time and date at job start Sun Mar 29 2020 21:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 C 1.76196 * 102.99887 * 2 1 4 4 C 1.38997 * 120.50130 * 359.97438 * 3 2 1 5 5 N 1.31766 * 120.64912 * 180.02562 * 4 3 2 6 6 C 1.31897 * 121.80519 * 359.68282 * 5 4 3 7 7 C 1.38250 * 120.94254 * 0.58564 * 6 5 4 8 8 C 1.50703 * 120.37700 * 179.72878 * 7 6 5 9 9 C 1.52996 * 109.46946 * 269.72211 * 8 7 6 10 10 C 1.52997 * 109.46947 * 179.97438 * 9 8 7 11 11 C 1.50706 * 109.47238 * 179.97438 * 10 9 8 12 12 H 1.07999 * 119.99515 * 0.02562 * 11 10 9 13 13 C 1.37870 * 120.00176 * 180.02562 * 11 10 9 14 14 N 1.31520 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48494 * 109.47288 * 59.99994 * 15 13 11 17 17 H 1.48503 * 109.47086 * 179.97438 * 15 13 11 18 18 H 1.48505 * 109.46819 * 299.99648 * 15 13 11 19 19 C 1.38511 * 119.24662 * 359.45027 * 7 6 5 20 20 H 1.09003 * 109.47173 * 60.00112 * 1 2 3 21 21 H 1.09002 * 109.47467 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47527 * 299.99606 * 1 2 3 23 23 H 1.07999 * 119.67263 * 0.02562 * 4 3 2 24 24 H 1.08004 * 119.52992 * 180.31131 * 6 5 4 25 25 H 1.08992 * 109.46894 * 149.71930 * 8 7 6 26 26 H 1.08996 * 109.46805 * 29.72080 * 8 7 6 27 27 H 1.09001 * 109.47372 * 60.00128 * 9 8 7 28 28 H 1.09004 * 109.47108 * 299.99872 * 9 8 7 29 29 H 1.09001 * 109.46832 * 59.99979 * 10 9 8 30 30 H 1.09000 * 109.47611 * 300.00276 * 10 9 8 31 31 H 0.97004 * 119.99507 * 180.02562 * 14 13 11 32 32 H 1.08006 * 120.82576 * 180.22868 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2103 1.7168 0.0000 4 6 1.2021 2.6736 -0.0005 5 7 1.4951 3.9583 -0.0010 6 6 2.7426 4.3867 0.0051 7 6 3.8000 3.4962 0.0003 8 6 5.2204 3.9998 0.0013 9 6 5.7022 4.1699 -1.4408 10 6 7.1440 4.6818 -1.4398 11 6 7.6188 4.8488 -2.8603 12 1 6.9581 4.6138 -3.6816 13 6 8.8966 5.3016 -3.1113 14 7 9.7014 5.5873 -2.1111 15 14 9.4849 5.5093 -4.8721 16 1 8.6138 6.4866 -5.5730 17 1 10.8844 6.0060 -4.8711 18 1 9.4240 4.2008 -5.5718 19 6 3.5392 2.1358 0.0005 20 1 -0.3634 0.5138 -0.8900 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 0.1683 2.3610 -0.0005 24 1 2.9408 5.4484 0.0096 25 1 5.8598 3.2825 0.5158 26 1 5.2650 4.9601 0.5150 27 1 5.0628 4.8872 -1.9553 28 1 5.6575 3.2095 -1.9545 29 1 7.7837 3.9648 -0.9252 30 1 7.1883 5.6422 -0.9262 31 1 10.6003 5.9062 -2.2878 32 1 4.3459 1.4176 0.0005 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250065800.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:12 Heat of formation + Delta-G solvation = -9.272566 kcal Electronic energy + Delta-G solvation = -13704.049703 eV Core-core repulsion = 11368.083523 eV Total energy + Delta-G solvation = -2335.966181 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.16947 -36.77138 -34.83053 -33.26608 -32.30607 -29.99603 -28.55530 -25.69389 -24.75960 -23.21709 -21.82198 -18.64326 -18.19888 -17.76945 -17.65772 -16.54597 -15.51039 -15.44922 -15.30596 -14.96349 -14.42385 -14.19610 -14.13006 -13.84928 -13.55388 -13.24054 -12.85017 -12.60521 -12.57095 -12.35228 -11.77395 -11.52818 -11.43204 -11.34767 -11.23793 -10.54086 -10.38944 -10.14469 -8.48978 -8.19548 -6.30458 -0.07802 0.18315 0.46220 1.40062 1.41456 1.42746 1.50765 2.41242 2.66358 3.13502 3.42555 3.74631 3.80306 3.98567 4.06225 4.27205 4.30183 4.40341 4.51013 4.51296 4.81721 4.82324 4.90537 4.94450 5.20214 5.23754 5.31499 5.52445 5.57657 5.76976 5.87113 6.26278 6.85990 6.86434 7.38650 8.91804 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.040113 B = 0.004222 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.867581 B = 6629.666734 C = 6880.852441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 S -0.126 6.126 3 C -0.140 4.140 4 C 0.072 3.928 5 N -0.483 5.483 6 C 0.083 3.917 7 C -0.103 4.103 8 C -0.070 4.070 9 C -0.089 4.089 10 C 0.023 3.977 11 C -0.546 4.546 12 H 0.056 0.944 13 C 0.001 3.999 14 N -0.932 5.932 15 Si 0.962 3.038 16 H -0.268 1.268 17 H -0.282 1.282 18 H -0.268 1.268 19 C -0.069 4.069 20 H 0.094 0.906 21 H 0.131 0.869 22 H 0.097 0.903 23 H 0.179 0.821 24 H 0.169 0.831 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.050 0.950 28 H 0.045 0.955 29 H -0.005 1.005 30 H -0.003 1.003 31 H 0.264 0.736 32 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.671 -9.835 5.406 21.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.308 4.308 2 S 0.114 5.886 3 C -0.255 4.255 4 C -0.091 4.091 5 N -0.192 5.192 6 C -0.076 4.076 7 C -0.107 4.107 8 C -0.108 4.108 9 C -0.127 4.127 10 C -0.014 4.014 11 C -0.584 4.584 12 H 0.075 0.925 13 C -0.197 4.197 14 N -0.572 5.572 15 Si 0.786 3.214 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.193 1.193 19 C -0.101 4.101 20 H 0.113 0.887 21 H 0.149 0.851 22 H 0.116 0.884 23 H 0.196 0.804 24 H 0.187 0.813 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.013 0.987 30 H 0.016 0.984 31 H 0.073 0.927 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.563 -10.218 5.445 21.877 hybrid contribution 0.700 0.766 -0.757 1.284 sum -17.863 -9.452 4.687 20.746 Atomic orbital electron populations 1.23842 0.91151 1.09011 1.06841 1.85628 1.10338 1.00422 1.92176 1.22950 0.97348 0.99469 1.05710 1.23193 0.99647 0.87727 0.98502 1.67637 1.22343 1.17452 1.11721 1.22931 0.86990 1.01109 0.96575 1.20957 0.97489 0.93737 0.98470 1.20567 0.90411 1.02086 0.97734 1.21400 0.96624 0.99875 0.94772 1.19029 0.92090 0.94847 0.95394 1.21688 0.98717 1.44123 0.93913 0.92549 1.25944 0.97047 0.95030 1.01652 1.70083 1.07955 1.46125 1.33059 0.85548 0.77322 0.78901 0.79581 1.19245 1.20682 1.19295 1.21304 0.95492 0.95778 0.97491 0.88688 0.85090 0.88427 0.80386 0.81339 0.90708 0.89983 0.93164 0.93595 0.98695 0.98433 0.92735 0.84037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.42 9.16 113.37 1.04 -0.38 16 2 S -0.13 -2.45 22.58 -56.49 -1.28 -3.72 16 3 C -0.14 -3.45 6.13 22.72 0.14 -3.31 16 4 C 0.07 1.72 10.54 84.88 0.89 2.62 16 5 N -0.48 -13.53 10.35 -195.23 -2.02 -15.56 16 6 C 0.08 2.35 10.85 84.69 0.92 3.27 16 7 C -0.10 -3.03 5.15 -19.80 -0.10 -3.13 16 8 C -0.07 -2.28 5.37 29.85 0.16 -2.12 16 9 C -0.09 -3.64 5.13 30.59 0.16 -3.48 16 10 C 0.02 1.23 4.97 29.85 0.15 1.38 16 11 C -0.55 -31.43 9.11 25.60 0.23 -31.20 16 12 H 0.06 3.13 7.74 -2.91 -0.02 3.11 16 13 C 0.00 0.06 5.46 84.65 0.46 0.53 16 14 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 15 Si 0.96 44.57 29.54 68.60 2.03 46.59 16 16 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 17 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 18 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 19 C -0.07 -1.93 9.62 22.60 0.22 -1.71 16 20 H 0.09 0.85 7.76 -2.39 -0.02 0.83 16 21 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 22 H 0.10 0.80 7.77 -2.39 -0.02 0.78 16 23 H 0.18 3.01 5.92 -2.91 -0.02 2.99 16 24 H 0.17 4.25 8.06 -2.91 -0.02 4.23 16 25 H 0.07 2.38 8.09 -2.39 -0.02 2.36 16 26 H 0.08 2.54 8.09 -2.39 -0.02 2.52 16 27 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 29 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 30 H 0.00 -0.15 8.14 -2.39 -0.02 -0.17 16 31 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.14 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -66.54 289.10 4.37 -62.17 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: 1.09 Total: 4.63 kcal Atomic # 6 Polarization: -41.80 SS G_CDS: 4.27 Total: -37.53 kcal Atomic # 7 Polarization: -70.40 SS G_CDS: -1.74 Total: -72.13 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.59 kcal Atomic # 16 Polarization: -2.45 SS G_CDS: -1.28 Total: -3.72 kcal Total: -66.54 4.37 -62.17 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250065800.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.895 kcal (2) G-P(sol) polarization free energy of solvation -66.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds