Wall clock time and date at job start Sun Mar 29 2020 21:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47267 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47124 * 59.99892 * 11 10 9 13 13 O 1.42901 * 109.46954 * 300.00131 * 11 10 9 14 14 C 1.53005 * 109.47277 * 180.02562 * 11 10 9 15 15 O 1.42895 * 109.46872 * 185.00081 * 14 11 10 16 16 C 1.35906 * 116.99857 * 179.97438 * 15 14 11 17 17 C 1.38735 * 120.05485 * 359.72649 * 16 15 14 18 18 C 1.38142 * 119.94306 * 179.74366 * 17 16 15 19 19 C 1.38267 * 120.05831 * 0.50579 * 18 17 16 20 20 C 1.38271 * 120.10845 * 359.76810 * 19 18 17 21 21 C 1.38145 * 120.05332 * 359.97438 * 20 19 18 22 22 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 25 25 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 26 26 H 0.96700 * 113.99645 * 299.99591 * 13 11 10 27 27 H 1.09005 * 109.46646 * 304.99806 * 14 11 10 28 28 H 1.08996 * 109.47004 * 64.99932 * 14 11 10 29 29 H 1.08007 * 120.02632 * 359.97438 * 17 16 15 30 30 H 1.08001 * 119.97170 * 180.27393 * 18 17 16 31 31 H 1.07994 * 119.94297 * 179.74519 * 19 18 17 32 32 H 1.07994 * 119.97043 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.02428 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6162 -2.1915 -0.0024 12 1 5.8802 -1.6195 0.8872 13 8 5.9605 -1.4427 -1.1697 14 6 6.3812 -3.5166 -0.0030 15 8 7.7817 -3.2580 0.1132 16 6 8.6090 -4.3362 0.1286 17 6 8.0830 -5.6169 0.0395 18 6 8.9264 -6.7109 0.0499 19 6 10.2929 -6.5309 0.1597 20 6 10.8192 -5.2558 0.2544 21 6 9.9804 -4.1582 0.2390 22 1 -0.4850 0.8401 0.0004 23 1 3.8646 -0.3622 -0.0014 24 1 3.8490 -3.0424 0.8892 25 1 3.8483 -3.0428 -0.8908 26 1 5.7531 -1.8919 -2.0005 27 1 6.0530 -4.1259 0.8392 28 1 6.1859 -4.0483 -0.9342 29 1 7.0153 -5.7582 -0.0418 30 1 8.5177 -7.7079 -0.0239 31 1 10.9502 -7.3877 0.1719 32 1 11.8868 -5.1178 0.3405 33 1 10.3919 -3.1625 0.3134 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251231975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:36 Heat of formation + Delta-G solvation = -49.787696 kcal Electronic energy + Delta-G solvation = -16011.404664 eV Core-core repulsion = 13230.928744 eV Total energy + Delta-G solvation = -2780.475920 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.24873 -38.11020 -36.76760 -34.23941 -31.66103 -31.22233 -30.44731 -29.28416 -25.92414 -23.18061 -22.51745 -21.64513 -21.28509 -18.39886 -17.67906 -16.76200 -16.47924 -16.05365 -15.30917 -14.72138 -14.65884 -14.50903 -13.76861 -13.58940 -13.45799 -12.92720 -12.75285 -12.39342 -12.15155 -11.78392 -11.34723 -11.17548 -11.05531 -10.86253 -10.61857 -10.16259 -9.80091 -9.58659 -9.20149 -8.95465 -8.34763 -7.29063 -5.80099 -3.16737 1.14421 1.27730 3.03539 3.40571 3.46432 3.47499 3.61239 4.53755 4.59077 4.59462 4.67902 4.81207 4.92238 5.01007 5.13587 5.19417 5.33668 5.38352 5.47319 5.55558 5.74469 5.77034 5.81353 6.14019 6.22001 6.32510 6.33248 6.49594 6.60134 7.31216 7.84468 7.95804 8.38396 9.17688 9.89804 10.09467 11.37746 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.061775 B = 0.004209 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.149093 B = 6650.058443 C = 6993.115964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.007 3.993 3 Si 0.887 3.113 4 H -0.282 1.282 5 H -0.291 1.291 6 H -0.275 1.275 7 C -0.251 4.251 8 H 0.090 0.910 9 N -0.748 5.748 10 C 0.132 3.868 11 C 0.100 3.900 12 H 0.108 0.892 13 O -0.549 6.549 14 C 0.031 3.969 15 O -0.304 6.304 16 C 0.134 3.866 17 C -0.212 4.212 18 C -0.081 4.081 19 C -0.166 4.166 20 C -0.082 4.082 21 C -0.156 4.156 22 H 0.260 0.740 23 H 0.368 0.632 24 H 0.037 0.963 25 H 0.031 0.969 26 H 0.373 0.627 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.129 0.871 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.243 -12.436 -0.254 23.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.580 5.580 2 C -0.189 4.189 3 Si 0.717 3.283 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.201 1.201 7 C -0.380 4.380 8 H 0.107 0.893 9 N -0.395 5.395 10 C 0.004 3.996 11 C 0.040 3.960 12 H 0.126 0.874 13 O -0.353 6.353 14 C -0.045 4.045 15 O -0.217 6.217 16 C 0.088 3.912 17 C -0.231 4.231 18 C -0.099 4.099 19 C -0.184 4.184 20 C -0.100 4.100 21 C -0.174 4.174 22 H 0.070 0.930 23 H 0.202 0.798 24 H 0.055 0.945 25 H 0.049 0.951 26 H 0.220 0.780 27 H 0.092 0.908 28 H 0.085 0.915 29 H 0.147 0.853 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 20.226 -11.866 0.207 23.451 hybrid contribution 0.111 0.467 -0.376 0.610 sum 20.338 -11.399 -0.169 23.315 Atomic orbital electron populations 1.69707 1.05155 1.26011 1.57124 1.24669 0.95249 0.97381 1.01603 0.86505 0.79203 0.84594 0.78004 1.20898 1.21707 1.20145 1.19023 0.80399 0.94802 1.43792 0.89251 1.42547 1.03948 1.01960 1.91036 1.21137 0.88231 0.90542 0.99655 1.22238 0.93369 0.90181 0.90238 0.87426 1.86609 1.85993 1.47195 1.15548 1.23647 0.78790 0.99999 1.02084 1.86166 1.17616 1.30422 1.87495 1.19145 0.90725 0.86285 0.95025 1.21341 1.00775 0.92135 1.08809 1.20961 0.93425 0.98281 0.97199 1.21043 0.95277 0.97211 1.04862 1.20962 0.99449 0.91963 0.97660 1.20488 0.90358 1.00111 1.06476 0.92953 0.79846 0.94498 0.95095 0.77994 0.90847 0.91469 0.85337 0.85880 0.86090 0.85519 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.43 13.97 55.49 0.78 -28.66 16 2 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 3 Si 0.89 22.65 27.73 -169.99 -4.71 17.94 16 4 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 6 H -0.28 -6.74 6.52 56.52 0.37 -6.37 16 7 C -0.25 -7.15 10.47 -15.06 -0.16 -7.30 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 9 N -0.75 -17.98 5.30 -59.91 -0.32 -18.30 16 10 C 0.13 2.44 5.92 -4.05 -0.02 2.42 16 11 C 0.10 1.55 3.34 -26.73 -0.09 1.46 16 12 H 0.11 1.77 8.14 -51.93 -0.42 1.35 16 13 O -0.55 -9.04 13.05 -40.11 -0.52 -9.56 16 14 C 0.03 0.39 4.37 37.16 0.16 0.55 16 15 O -0.30 -4.27 10.10 -24.32 -0.25 -4.52 16 16 C 0.13 1.69 6.69 -39.22 -0.26 1.42 16 17 C -0.21 -2.33 9.04 -39.43 -0.36 -2.68 16 18 C -0.08 -0.76 10.04 -39.61 -0.40 -1.16 16 19 C -0.17 -1.48 10.04 -39.56 -0.40 -1.87 16 20 C -0.08 -0.76 10.04 -39.60 -0.40 -1.16 16 21 C -0.16 -1.75 9.99 -39.44 -0.39 -2.14 16 22 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 23 H 0.37 8.91 5.41 -40.82 -0.22 8.69 16 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.37 4.86 9.04 45.56 0.41 5.28 16 27 H 0.07 0.82 7.65 -51.93 -0.40 0.43 16 28 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 29 H 0.13 1.25 6.30 -52.48 -0.33 0.92 16 30 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 285.43 15.07 4.30 4.30 Total: -1.00 -33.45 285.43 -6.62 -40.06 By element: Atomic # 1 Polarization: 12.58 SS G_CDS: -3.49 Total: 9.10 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -2.41 Total: -10.36 kcal Atomic # 7 Polarization: -47.41 SS G_CDS: 0.46 Total: -46.96 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.77 Total: -14.08 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -4.71 Total: 17.94 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -33.45 -6.62 -40.06 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251231975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.723 kcal (2) G-P(sol) polarization free energy of solvation -33.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds