Wall clock time and date at job start Sun Mar 29 2020 21:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00313 * 3 2 1 5 5 H 1.48494 * 109.46800 * 30.00360 * 3 2 1 6 6 H 1.48504 * 109.46913 * 150.00063 * 3 2 1 7 7 C 1.38817 * 119.99892 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99438 * 0.26604 * 7 2 1 9 9 N 1.36935 * 119.99990 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99938 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47267 * 179.97438 * 10 9 7 12 12 H 1.09005 * 109.47124 * 59.99892 * 11 10 9 13 13 O 1.42901 * 109.46954 * 300.00131 * 11 10 9 14 14 C 1.53005 * 109.47277 * 180.02562 * 11 10 9 15 15 O 1.42895 * 109.46872 * 185.00081 * 14 11 10 16 16 C 1.35906 * 116.99857 * 179.97438 * 15 14 11 17 17 C 1.38735 * 120.05485 * 359.72649 * 16 15 14 18 18 C 1.38142 * 119.94306 * 179.74366 * 17 16 15 19 19 C 1.38267 * 120.05831 * 0.50579 * 18 17 16 20 20 C 1.38271 * 120.10845 * 359.76810 * 19 18 17 21 21 C 1.38145 * 120.05332 * 359.97438 * 20 19 18 22 22 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 23 23 H 0.96999 * 120.00077 * 359.97438 * 9 7 2 24 24 H 1.09004 * 109.47024 * 300.00223 * 10 9 7 25 25 H 1.09005 * 109.47136 * 59.99839 * 10 9 7 26 26 H 0.96700 * 113.99645 * 299.99591 * 13 11 10 27 27 H 1.09005 * 109.46646 * 304.99806 * 14 11 10 28 28 H 1.08996 * 109.47004 * 64.99932 * 14 11 10 29 29 H 1.08007 * 120.02632 * 359.97438 * 17 16 15 30 30 H 1.08001 * 119.97170 * 180.27393 * 18 17 16 31 31 H 1.07994 * 119.94297 * 179.74519 * 19 18 17 32 32 H 1.07994 * 119.97043 * 179.97438 * 20 19 18 33 33 H 1.08000 * 120.02428 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4400 0.7001 7 6 2.0102 -1.2022 -0.0005 8 1 1.4701 -2.1374 -0.0053 9 7 3.3796 -1.2022 -0.0011 10 6 4.1120 -2.4710 -0.0011 11 6 5.6162 -2.1915 -0.0024 12 1 5.8802 -1.6195 0.8872 13 8 5.9605 -1.4427 -1.1697 14 6 6.3812 -3.5166 -0.0030 15 8 7.7817 -3.2580 0.1132 16 6 8.6090 -4.3362 0.1286 17 6 8.0830 -5.6169 0.0395 18 6 8.9264 -6.7109 0.0499 19 6 10.2929 -6.5309 0.1597 20 6 10.8192 -5.2558 0.2544 21 6 9.9804 -4.1582 0.2390 22 1 -0.4850 0.8401 0.0004 23 1 3.8646 -0.3622 -0.0014 24 1 3.8490 -3.0424 0.8892 25 1 3.8483 -3.0428 -0.8908 26 1 5.7531 -1.8919 -2.0005 27 1 6.0530 -4.1259 0.8392 28 1 6.1859 -4.0483 -0.9342 29 1 7.0153 -5.7582 -0.0418 30 1 8.5177 -7.7079 -0.0239 31 1 10.9502 -7.3877 0.1719 32 1 11.8868 -5.1178 0.3405 33 1 10.3919 -3.1625 0.3134 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251231975.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:36 Heat of formation + Delta-G solvation = -74.523429 kcal Electronic energy + Delta-G solvation = -16012.477286 eV Core-core repulsion = 13230.928744 eV Total energy + Delta-G solvation = -2781.548542 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12412 -39.19095 -37.85533 -36.07760 -33.55091 -32.12913 -31.52933 -30.38600 -27.42241 -24.55668 -23.56729 -22.87643 -22.45885 -19.87337 -19.15005 -17.93237 -17.55557 -16.81615 -16.57837 -16.31688 -15.88711 -15.63105 -15.24771 -14.99224 -14.41993 -14.30039 -13.93354 -13.76165 -13.41113 -13.28617 -12.84640 -12.47084 -12.28263 -12.01471 -11.96366 -11.86922 -11.61900 -11.08874 -11.01417 -9.94258 -9.35753 -9.16125 -8.06578 -5.40346 0.40393 0.50500 1.38553 1.40176 1.47740 2.07346 2.45956 2.86151 3.24310 3.37164 3.54087 3.87988 3.91179 3.97194 4.07334 4.10498 4.28159 4.34897 4.46002 4.51914 4.58573 4.76941 4.84392 5.10214 5.10863 5.38225 5.49676 5.61336 5.70393 5.88060 6.17217 6.44738 6.76574 7.04003 7.79610 7.97673 9.14473 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.061775 B = 0.004209 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 453.149093 B = 6650.058443 C = 6993.115964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.981 5.981 2 C -0.060 4.060 3 Si 0.955 3.045 4 H -0.279 1.279 5 H -0.293 1.293 6 H -0.259 1.259 7 C -0.238 4.238 8 H 0.063 0.937 9 N -0.755 5.755 10 C 0.128 3.872 11 C 0.111 3.889 12 H 0.097 0.903 13 O -0.566 6.566 14 C 0.040 3.960 15 O -0.326 6.326 16 C 0.106 3.894 17 C -0.222 4.222 18 C -0.086 4.086 19 C -0.165 4.165 20 C -0.083 4.083 21 C -0.174 4.174 22 H 0.259 0.741 23 H 0.368 0.632 24 H 0.045 0.955 25 H 0.043 0.957 26 H 0.387 0.613 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.137 0.863 30 H 0.147 0.853 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.611 -13.503 -0.352 26.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.631 5.631 2 C -0.251 4.251 3 Si 0.782 3.218 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.184 1.184 7 C -0.369 4.369 8 H 0.081 0.919 9 N -0.401 5.401 10 C 0.002 3.998 11 C 0.051 3.949 12 H 0.115 0.885 13 O -0.373 6.373 14 C -0.036 4.036 15 O -0.240 6.240 16 C 0.061 3.939 17 C -0.241 4.241 18 C -0.104 4.104 19 C -0.183 4.183 20 C -0.101 4.101 21 C -0.193 4.193 22 H 0.068 0.932 23 H 0.201 0.799 24 H 0.063 0.937 25 H 0.061 0.939 26 H 0.236 0.764 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.155 0.845 30 H 0.164 0.836 31 H 0.166 0.834 32 H 0.170 0.830 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 22.645 -12.975 0.103 26.099 hybrid contribution -0.556 0.631 -0.355 0.913 sum 22.089 -12.344 -0.252 25.306 Atomic orbital electron populations 1.69867 1.06989 1.26804 1.59421 1.25461 0.96083 1.01148 1.02456 0.85418 0.78366 0.79878 0.78138 1.20477 1.21933 1.18368 1.19050 0.82435 0.93702 1.41689 0.91943 1.42581 1.02512 1.04059 1.90994 1.21337 0.89848 0.88344 1.00289 1.21987 0.91611 0.91531 0.89741 0.88506 1.86570 1.86037 1.48203 1.16490 1.23467 0.78402 0.98132 1.03612 1.86093 1.18012 1.31669 1.88227 1.19410 0.91048 0.86509 0.96938 1.21532 1.01570 0.91995 1.08968 1.21326 0.93749 0.98958 0.96389 1.21450 0.95569 0.97969 1.03279 1.21311 1.00601 0.91599 0.96589 1.20720 0.90380 1.00967 1.07211 0.93179 0.79881 0.93731 0.93876 0.76394 0.89527 0.89746 0.84544 0.83555 0.83370 0.82977 0.85308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.98 -63.08 13.97 21.65 0.30 -62.78 16 2 C -0.06 -3.55 5.50 84.86 0.47 -3.08 16 3 Si 0.95 46.87 27.73 68.60 1.90 48.77 16 4 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 5 H -0.29 -14.37 7.11 99.48 0.71 -13.66 16 6 H -0.26 -11.84 6.52 99.48 0.65 -11.19 16 7 C -0.24 -13.63 10.47 84.04 0.88 -12.75 16 8 H 0.06 3.85 8.06 -2.91 -0.02 3.82 16 9 N -0.76 -35.58 5.30 -343.45 -1.82 -37.40 16 10 C 0.13 4.56 5.92 86.38 0.51 5.07 16 11 C 0.11 3.29 3.34 30.59 0.10 3.39 16 12 H 0.10 3.09 8.14 -2.38 -0.02 3.07 16 13 O -0.57 -17.81 13.05 -144.32 -1.88 -19.69 16 14 C 0.04 0.93 4.37 71.98 0.31 1.24 16 15 O -0.33 -8.87 10.10 -87.83 -0.89 -9.76 16 16 C 0.11 2.55 6.69 22.51 0.15 2.70 16 17 C -0.22 -4.46 9.04 22.37 0.20 -4.26 16 18 C -0.09 -1.40 10.04 22.25 0.22 -1.18 16 19 C -0.16 -2.43 10.04 22.28 0.22 -2.20 16 20 C -0.08 -1.35 10.04 22.26 0.22 -1.12 16 21 C -0.17 -3.73 9.99 22.36 0.22 -3.50 16 22 H 0.26 15.87 8.31 -92.70 -0.77 15.10 16 23 H 0.37 17.26 5.41 -92.71 -0.50 16.76 16 24 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 25 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 26 H 0.39 9.45 9.04 -74.06 -0.67 8.78 16 27 H 0.09 1.78 7.65 -2.38 -0.02 1.76 16 28 H 0.08 1.67 7.68 -2.39 -0.02 1.65 16 29 H 0.14 2.39 6.30 -2.91 -0.02 2.37 16 30 H 0.15 1.61 8.06 -2.91 -0.02 1.59 16 31 H 0.15 1.34 8.06 -2.91 -0.02 1.32 16 32 H 0.15 1.58 8.06 -2.91 -0.02 1.55 16 33 H 0.13 2.63 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -71.81 285.43 1.03 -70.78 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: -0.11 Total: 25.76 kcal Atomic # 6 Polarization: -19.22 SS G_CDS: 3.52 Total: -15.69 kcal Atomic # 7 Polarization: -98.67 SS G_CDS: -1.52 Total: -100.18 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -2.77 Total: -29.44 kcal Atomic # 14 Polarization: 46.87 SS G_CDS: 1.90 Total: 48.77 kcal Total: -71.81 1.03 -70.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251231975.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.740 kcal (2) G-P(sol) polarization free energy of solvation -71.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds