Wall clock time and date at job start Sun Mar 29 2020 21:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47398 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47221 * 299.99551 * 3 2 1 6 6 H 1.48505 * 109.47143 * 59.99157 * 3 2 1 7 7 C 1.38817 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99558 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00394 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00259 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47195 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47153 * 304.99547 * 11 10 9 13 13 O 1.42898 * 109.47319 * 64.99855 * 11 10 9 14 14 C 1.53002 * 109.46817 * 184.99778 * 11 10 9 15 15 O 1.42898 * 109.46622 * 174.99979 * 14 11 10 16 16 C 1.35908 * 116.99858 * 179.97438 * 15 14 11 17 17 C 1.38732 * 120.05232 * 359.72291 * 16 15 14 18 18 C 1.38146 * 119.93967 * 179.74203 * 17 16 15 19 19 C 1.38267 * 120.05791 * 0.51525 * 18 17 16 20 20 C 1.38267 * 120.10788 * 359.76189 * 19 18 17 21 21 C 1.38135 * 120.05844 * 359.97438 * 20 19 18 22 22 H 0.97002 * 119.99842 * 0.02562 * 1 2 3 23 23 H 0.96999 * 119.99699 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47117 * 59.99083 * 10 9 7 25 25 H 1.09004 * 109.46581 * 299.99736 * 10 9 7 26 26 H 0.96698 * 113.99898 * 59.99520 * 13 11 10 27 27 H 1.09000 * 109.47059 * 294.99790 * 14 11 10 28 28 H 1.08996 * 109.47073 * 54.99883 * 14 11 10 29 29 H 1.08001 * 120.03178 * 359.97438 * 17 16 15 30 30 H 1.08006 * 119.97233 * 180.27501 * 18 17 16 31 31 H 1.08001 * 119.94408 * 179.74806 * 19 18 17 32 32 H 1.08007 * 119.96729 * 179.97438 * 20 19 18 33 33 H 1.08007 * 120.03017 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 1 0.3792 -4.7123 0.8436 13 8 0.3217 -4.8126 -1.2192 14 6 1.8244 -6.1411 0.1289 15 8 0.8923 -7.2179 0.2464 16 6 1.4077 -8.4696 0.3679 17 6 2.7822 -8.6580 0.3681 18 6 3.3036 -9.9307 0.4971 19 6 2.4569 -11.0174 0.6152 20 6 1.0866 -10.8327 0.6095 21 6 0.5602 -9.5616 0.4862 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3881 0.0005 24 1 2.6840 -3.7142 0.8921 25 1 2.6852 -3.7150 -0.8879 26 1 0.8680 -4.9045 -2.0118 27 1 2.4428 -6.2908 -0.7562 28 1 2.4589 -6.1115 1.0147 29 1 3.4440 -7.8100 0.2713 30 1 4.3737 -10.0775 0.5018 31 1 2.8665 -12.0120 0.7118 32 1 0.4272 -11.6832 0.7015 33 1 -0.5102 -9.4179 0.4814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001251231976.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:39 Heat of formation + Delta-G solvation = -53.365419 kcal Electronic energy + Delta-G solvation = -15942.759537 eV Core-core repulsion = 13162.128475 eV Total energy + Delta-G solvation = -2780.631061 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.18362 -38.00112 -36.63579 -34.09322 -31.54560 -31.12732 -30.26333 -28.99886 -25.66239 -23.26654 -22.58851 -21.76408 -21.15076 -18.29184 -17.17393 -16.70597 -16.36203 -15.99816 -15.24327 -14.70287 -14.53917 -14.42220 -13.81600 -13.53330 -13.14191 -12.89633 -12.70249 -12.36070 -11.99999 -11.73156 -11.13273 -11.03364 -10.93000 -10.84992 -10.45254 -10.14632 -9.82997 -9.55347 -9.15661 -8.93824 -8.29230 -6.97001 -5.77875 -3.08399 1.18961 1.32602 3.11634 3.42166 3.47270 3.49957 3.65921 4.54170 4.66295 4.69344 4.73799 4.92422 4.96668 5.11549 5.21146 5.24894 5.42484 5.46370 5.53293 5.66638 5.86008 5.89013 6.16091 6.20226 6.26655 6.37494 6.41808 6.61901 6.66075 7.38207 7.66209 8.01505 8.39714 9.51409 10.07396 10.43249 11.44421 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.068058 B = 0.003871 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.314095 B = 7232.063655 C = 7519.549363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C -0.012 4.012 3 Si 0.909 3.091 4 H -0.280 1.280 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.246 4.246 8 H 0.071 0.929 9 N -0.725 5.725 10 C 0.129 3.871 11 C 0.103 3.897 12 H 0.109 0.891 13 O -0.545 6.545 14 C 0.031 3.969 15 O -0.303 6.303 16 C 0.135 3.865 17 C -0.213 4.213 18 C -0.081 4.081 19 C -0.167 4.167 20 C -0.082 4.082 21 C -0.156 4.156 22 H 0.256 0.744 23 H 0.390 0.610 24 H 0.028 0.972 25 H 0.023 0.977 26 H 0.370 0.630 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.128 0.872 30 H 0.123 0.877 31 H 0.121 0.879 32 H 0.127 0.873 33 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.351 -20.719 0.501 21.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.208 4.208 3 Si 0.740 3.260 4 H -0.205 1.205 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.377 4.377 8 H 0.089 0.911 9 N -0.370 5.370 10 C 0.001 3.999 11 C 0.043 3.957 12 H 0.127 0.873 13 O -0.349 6.349 14 C -0.045 4.045 15 O -0.216 6.216 16 C 0.089 3.911 17 C -0.231 4.231 18 C -0.099 4.099 19 C -0.185 4.185 20 C -0.100 4.100 21 C -0.174 4.174 22 H 0.066 0.934 23 H 0.224 0.776 24 H 0.046 0.954 25 H 0.041 0.959 26 H 0.216 0.784 27 H 0.083 0.917 28 H 0.090 0.910 29 H 0.146 0.854 30 H 0.141 0.859 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.775 -20.441 0.909 21.011 hybrid contribution 0.999 0.895 -0.324 1.380 sum 5.775 -19.547 0.585 20.390 Atomic orbital electron populations 1.69695 1.05130 1.25653 1.57096 1.24785 0.95547 0.97784 1.02700 0.86096 0.78706 0.83971 0.77246 1.20547 1.21768 1.21776 1.19248 0.91003 0.84014 1.43441 0.91129 1.42238 1.06187 0.99266 1.89322 1.21171 0.93371 0.86633 0.98768 1.22197 0.94685 0.89853 0.88925 0.87337 1.86650 1.37141 1.96088 1.15024 1.23688 0.92416 0.86589 1.01842 1.86183 1.35840 1.12508 1.87045 1.19165 0.91948 0.85243 0.94751 1.21335 0.94115 0.98835 1.08850 1.20951 0.99731 0.91994 0.97229 1.21032 0.93595 0.98830 1.05033 1.20958 0.95303 0.96117 0.97653 1.20497 0.99970 0.90603 1.06353 0.93436 0.77564 0.95432 0.95939 0.78379 0.91678 0.91006 0.85391 0.85948 0.86135 0.85535 0.85162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 2 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.42 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.25 -6.95 9.99 -15.06 -0.15 -7.10 16 8 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 9 N -0.72 -18.67 5.55 -59.91 -0.33 -19.01 16 10 C 0.13 2.52 5.90 -4.04 -0.02 2.50 16 11 C 0.10 1.73 3.28 -26.73 -0.09 1.65 16 12 H 0.11 1.97 8.14 -51.93 -0.42 1.55 16 13 O -0.54 -9.76 13.25 -40.09 -0.53 -10.29 16 14 C 0.03 0.41 4.37 37.16 0.16 0.57 16 15 O -0.30 -4.51 10.10 -24.31 -0.25 -4.75 16 16 C 0.13 1.78 6.69 -39.22 -0.26 1.51 16 17 C -0.21 -2.44 9.04 -39.43 -0.36 -2.79 16 18 C -0.08 -0.80 10.04 -39.60 -0.40 -1.19 16 19 C -0.17 -1.54 10.04 -39.56 -0.40 -1.94 16 20 C -0.08 -0.80 10.04 -39.61 -0.40 -1.19 16 21 C -0.16 -1.83 9.99 -39.44 -0.39 -2.22 16 22 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 23 H 0.39 10.83 7.67 -40.82 -0.31 10.52 16 24 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.37 5.27 9.05 45.56 0.41 5.69 16 27 H 0.07 0.76 7.65 -51.93 -0.40 0.37 16 28 H 0.07 0.87 7.68 -51.93 -0.40 0.47 16 29 H 0.13 1.31 6.30 -52.49 -0.33 0.98 16 30 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 31 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 32 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 33 H 0.13 1.42 8.06 -52.48 -0.42 1.00 16 LS Contribution 288.85 15.07 4.35 4.35 Total: -1.00 -32.84 288.85 -6.99 -39.83 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: -3.53 Total: 10.91 kcal Atomic # 6 Polarization: -8.25 SS G_CDS: -2.40 Total: -10.65 kcal Atomic # 7 Polarization: -47.23 SS G_CDS: 0.39 Total: -46.83 kcal Atomic # 8 Polarization: -14.26 SS G_CDS: -0.78 Total: -15.04 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.84 -6.99 -39.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251231976.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.533 kcal (2) G-P(sol) polarization free energy of solvation -32.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds