Wall clock time and date at job start Sun Mar 29 2020 21:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86795 * 120.00274 * 2 1 4 4 H 1.48496 * 109.47398 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47221 * 299.99551 * 3 2 1 6 6 H 1.48505 * 109.47143 * 59.99157 * 3 2 1 7 7 C 1.38817 * 119.99501 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99558 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00394 * 0.02562 * 7 2 1 10 10 C 1.46497 * 120.00259 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47195 * 179.97438 * 10 9 7 12 12 H 1.09002 * 109.47153 * 304.99547 * 11 10 9 13 13 O 1.42898 * 109.47319 * 64.99855 * 11 10 9 14 14 C 1.53002 * 109.46817 * 184.99778 * 11 10 9 15 15 O 1.42898 * 109.46622 * 174.99979 * 14 11 10 16 16 C 1.35908 * 116.99858 * 179.97438 * 15 14 11 17 17 C 1.38732 * 120.05232 * 359.72291 * 16 15 14 18 18 C 1.38146 * 119.93967 * 179.74203 * 17 16 15 19 19 C 1.38267 * 120.05791 * 0.51525 * 18 17 16 20 20 C 1.38267 * 120.10788 * 359.76189 * 19 18 17 21 21 C 1.38135 * 120.05844 * 359.97438 * 20 19 18 22 22 H 0.97002 * 119.99842 * 0.02562 * 1 2 3 23 23 H 0.96999 * 119.99699 * 359.97438 * 9 7 2 24 24 H 1.09001 * 109.47117 * 59.99083 * 10 9 7 25 25 H 1.09004 * 109.46581 * 299.99736 * 10 9 7 26 26 H 0.96698 * 113.99898 * 59.99520 * 13 11 10 27 27 H 1.09000 * 109.47059 * 294.99790 * 14 11 10 28 28 H 1.08996 * 109.47073 * 54.99883 * 14 11 10 29 29 H 1.08001 * 120.03178 * 359.97438 * 17 16 15 30 30 H 1.08006 * 119.97233 * 180.27501 * 18 17 16 31 31 H 1.08001 * 119.94408 * 179.74806 * 19 18 17 32 32 H 1.08007 * 119.96729 * 179.97438 * 20 19 18 33 33 H 1.08007 * 120.03017 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8916 2.3964 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3881 0.0005 10 6 2.0579 -3.6569 0.0017 11 6 1.0636 -4.8197 0.0021 12 1 0.3792 -4.7123 0.8436 13 8 0.3217 -4.8126 -1.2192 14 6 1.8244 -6.1411 0.1289 15 8 0.8923 -7.2179 0.2464 16 6 1.4077 -8.4696 0.3679 17 6 2.7822 -8.6580 0.3681 18 6 3.3036 -9.9307 0.4971 19 6 2.4569 -11.0174 0.6152 20 6 1.0866 -10.8327 0.6095 21 6 0.5602 -9.5616 0.4862 22 1 -0.4850 0.8401 -0.0004 23 1 0.3555 -2.3881 0.0005 24 1 2.6840 -3.7142 0.8921 25 1 2.6852 -3.7150 -0.8879 26 1 0.8680 -4.9045 -2.0118 27 1 2.4428 -6.2908 -0.7562 28 1 2.4589 -6.1115 1.0147 29 1 3.4440 -7.8100 0.2713 30 1 4.3737 -10.0775 0.5018 31 1 2.8665 -12.0120 0.7118 32 1 0.4272 -11.6832 0.7015 33 1 -0.5102 -9.4179 0.4814 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001251231976.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:38 Heat of formation + Delta-G solvation = -77.404949 kcal Electronic energy + Delta-G solvation = -15943.801969 eV Core-core repulsion = 13162.128475 eV Total energy + Delta-G solvation = -2781.673494 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.11785 -39.14266 -37.81136 -35.98747 -33.31094 -32.05646 -31.38385 -30.24135 -27.27266 -24.84413 -23.61216 -22.87961 -22.41281 -19.34832 -19.10779 -17.94546 -17.52742 -16.81160 -16.53529 -16.31739 -15.82748 -15.62894 -15.19426 -14.89052 -14.36729 -14.26167 -13.86025 -13.69340 -13.34857 -12.98570 -12.79624 -12.46383 -12.16222 -12.05362 -11.96285 -11.85275 -11.61719 -11.05712 -10.96545 -9.93872 -9.15965 -9.04950 -7.96403 -5.27424 0.40827 0.50959 1.47304 1.48911 1.58989 2.09050 2.56327 2.86597 3.34508 3.46945 3.61123 3.91227 3.93370 4.03089 4.11946 4.20143 4.30650 4.41434 4.49146 4.52417 4.59028 4.77575 4.85661 5.10662 5.14350 5.39027 5.46428 5.49941 5.61511 5.88994 6.23876 6.45997 6.80787 7.30547 8.04663 8.27578 9.27374 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.068058 B = 0.003871 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 411.314095 B = 7232.063655 C = 7519.549363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.078 4.078 3 Si 0.979 3.021 4 H -0.262 1.262 5 H -0.293 1.293 6 H -0.293 1.293 7 C -0.249 4.249 8 H 0.082 0.918 9 N -0.743 5.743 10 C 0.128 3.872 11 C 0.113 3.887 12 H 0.088 0.912 13 O -0.566 6.566 14 C 0.042 3.958 15 O -0.328 6.328 16 C 0.105 3.895 17 C -0.222 4.222 18 C -0.085 4.085 19 C -0.164 4.164 20 C -0.083 4.083 21 C -0.175 4.175 22 H 0.252 0.748 23 H 0.375 0.625 24 H 0.041 0.959 25 H 0.039 0.961 26 H 0.384 0.616 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.137 0.863 30 H 0.148 0.852 31 H 0.150 0.850 32 H 0.153 0.847 33 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.496 -22.334 0.492 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.271 4.271 3 Si 0.808 3.192 4 H -0.186 1.186 5 H -0.220 1.220 6 H -0.220 1.220 7 C -0.380 4.380 8 H 0.100 0.900 9 N -0.386 5.386 10 C 0.001 3.999 11 C 0.053 3.947 12 H 0.106 0.894 13 O -0.373 6.373 14 C -0.033 4.033 15 O -0.242 6.242 16 C 0.060 3.940 17 C -0.240 4.240 18 C -0.103 4.103 19 C -0.182 4.182 20 C -0.101 4.101 21 C -0.194 4.194 22 H 0.060 0.940 23 H 0.206 0.794 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.233 0.767 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.155 0.845 30 H 0.166 0.834 31 H 0.167 0.833 32 H 0.170 0.830 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 6.973 -22.105 0.894 23.196 hybrid contribution 0.361 1.222 -0.321 1.314 sum 7.334 -20.883 0.573 22.140 Atomic orbital electron populations 1.69867 1.06879 1.26128 1.59200 1.25684 0.96421 1.01485 1.03463 0.84995 0.78287 0.79329 0.76632 1.18608 1.22046 1.22034 1.19715 0.91665 0.85082 1.41579 0.90043 1.42472 1.05777 1.00925 1.89461 1.21355 0.93751 0.85126 0.99685 1.21952 0.93728 0.91007 0.88007 0.89444 1.86609 1.38400 1.96238 1.16050 1.23467 0.91671 0.84725 1.03485 1.86110 1.36759 1.13477 1.87872 1.19446 0.93116 0.84639 0.96833 1.21530 0.93465 1.00097 1.08954 1.21331 1.01283 0.91441 0.96264 1.21454 0.93348 1.00113 1.03311 1.21308 0.96238 0.95962 0.96551 1.20725 1.00038 0.91416 1.07209 0.93963 0.79355 0.94123 0.94299 0.76692 0.89638 0.89568 0.84506 0.83405 0.83258 0.82958 0.85467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.97 13.06 21.65 0.28 -60.68 16 2 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 3 Si 0.98 46.26 29.55 68.60 2.03 48.29 16 4 H -0.26 -11.43 7.11 99.48 0.71 -10.73 16 5 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 6 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 7 C -0.25 -13.97 9.99 84.04 0.84 -13.13 16 8 H 0.08 4.30 7.83 -2.91 -0.02 4.27 16 9 N -0.74 -38.50 5.55 -343.45 -1.91 -40.41 16 10 C 0.13 4.87 5.90 86.38 0.51 5.38 16 11 C 0.11 3.78 3.28 30.59 0.10 3.88 16 12 H 0.09 3.28 8.14 -2.39 -0.02 3.26 16 13 O -0.57 -20.40 13.25 -144.33 -1.91 -22.32 16 14 C 0.04 1.09 4.37 71.98 0.31 1.40 16 15 O -0.33 -9.74 10.10 -87.87 -0.89 -10.63 16 16 C 0.10 2.69 6.69 22.51 0.15 2.84 16 17 C -0.22 -4.69 9.04 22.37 0.20 -4.48 16 18 C -0.09 -1.44 10.04 22.25 0.22 -1.21 16 19 C -0.16 -2.53 10.04 22.28 0.22 -2.31 16 20 C -0.08 -1.42 10.04 22.25 0.22 -1.20 16 21 C -0.18 -4.02 9.99 22.36 0.22 -3.79 16 22 H 0.25 15.23 8.31 -92.71 -0.77 14.46 16 23 H 0.37 21.38 7.67 -92.71 -0.71 20.67 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 26 H 0.38 10.80 9.05 -74.06 -0.67 10.13 16 27 H 0.09 1.84 7.65 -2.39 -0.02 1.82 16 28 H 0.09 1.95 7.68 -2.39 -0.02 1.93 16 29 H 0.14 2.51 6.30 -2.91 -0.02 2.49 16 30 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.15 1.41 8.06 -2.91 -0.02 1.39 16 32 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 33 H 0.13 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -70.89 288.85 0.82 -70.07 By element: Atomic # 1 Polarization: 32.64 SS G_CDS: -0.26 Total: 32.38 kcal Atomic # 6 Polarization: -20.19 SS G_CDS: 3.48 Total: -16.71 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -1.62 Total: -101.09 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -2.80 Total: -32.94 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Total: -70.89 0.82 -70.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001251231976.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.335 kcal (2) G-P(sol) polarization free energy of solvation -70.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds