Wall clock time and date at job start Sun Mar 29 2020 21:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86801 * 119.99976 * 2 1 4 4 H 1.48501 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47096 * 299.99891 * 3 2 1 6 6 H 1.48494 * 109.46903 * 60.00253 * 3 2 1 7 7 C 1.39932 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00072 * 195.15775 * 7 2 1 9 9 C 1.41045 * 119.99924 * 15.16864 * 7 2 1 10 10 C 1.40730 * 120.30934 * 25.66888 * 9 7 2 11 11 C 1.36445 * 119.95228 * 180.27909 * 10 9 7 12 12 C 1.38904 * 120.59790 * 359.72891 * 11 10 9 13 13 C 1.38165 * 120.62273 * 359.97438 * 12 11 10 14 14 C 1.38749 * 120.03061 * 0.02562 * 13 12 11 15 15 N 1.38730 * 120.29602 * 180.02562 * 14 13 12 16 16 C 1.46500 * 120.00178 * 359.97438 * 15 14 13 17 17 C 1.52996 * 109.46946 * 180.02562 * 16 15 14 18 18 H 1.09001 * 109.47513 * 59.99994 * 17 16 15 19 19 O 1.42895 * 109.47231 * 299.99738 * 17 16 15 20 20 C 1.53006 * 109.47087 * 180.02562 * 17 16 15 21 21 O 1.42897 * 109.47336 * 185.00200 * 20 17 16 22 22 H 0.96997 * 120.00005 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.02270 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.70326 * 179.74567 * 11 10 9 25 25 H 1.07997 * 119.68932 * 180.02562 * 12 11 10 26 26 H 1.08006 * 119.98429 * 179.97438 * 13 12 11 27 27 H 0.97003 * 119.99767 * 180.02562 * 15 14 13 28 28 H 1.09001 * 109.47020 * 59.99873 * 16 15 14 29 29 H 1.09002 * 109.47165 * 300.00108 * 16 15 14 30 30 H 0.96703 * 114.00368 * 299.99962 * 19 17 16 31 31 H 1.08998 * 109.46827 * 64.99632 * 20 17 16 32 32 H 1.09000 * 109.46812 * 304.99949 * 20 17 16 33 33 H 0.96694 * 113.99805 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3963 1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0602 -1.2282 0.2440 9 6 1.3401 -2.4119 -0.3207 10 6 0.1909 -2.3900 -1.1328 11 6 -0.4532 -3.5547 -1.4333 12 6 0.0177 -4.7684 -0.9490 13 6 1.1471 -4.8187 -0.1547 14 6 1.8224 -3.6501 0.1670 15 7 2.9573 -3.6942 0.9636 16 6 3.4475 -4.9787 1.4698 17 6 4.7016 -4.7485 2.3153 18 1 4.4597 -4.0959 3.1541 19 8 5.7122 -4.1363 1.5115 20 6 5.2140 -6.0900 2.8434 21 8 6.3147 -5.8653 3.7265 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1831 -1.4515 -1.5146 24 1 -1.3371 -3.5327 -2.0535 25 1 -0.5034 -5.6814 -1.1963 26 1 1.5040 -5.7680 0.2166 27 1 3.4258 -2.8745 1.1862 28 1 3.6890 -5.6314 0.6309 29 1 2.6768 -5.4455 2.0832 30 1 5.9775 -4.6626 0.7449 31 1 5.5393 -6.7092 2.0074 32 1 4.4139 -6.5979 3.3819 33 1 6.6910 -6.6741 4.0996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001252065175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:09 Heat of formation + Delta-G solvation = -81.721102 kcal Electronic energy + Delta-G solvation = -16518.529816 eV Core-core repulsion = 13736.669160 eV Total energy + Delta-G solvation = -2781.860656 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -38.59645 -37.58983 -35.95243 -34.05931 -33.43186 -30.49477 -29.39324 -27.70382 -25.26014 -24.36315 -21.93832 -20.57136 -19.84357 -17.55605 -17.15526 -16.56618 -16.13123 -16.03357 -14.89825 -14.46422 -14.00625 -13.93197 -13.61755 -12.83753 -12.66719 -12.54777 -12.33198 -12.17601 -11.53619 -11.19718 -11.00052 -10.81602 -10.72118 -10.35652 -10.28111 -9.95891 -9.50476 -9.38862 -9.08496 -8.85705 -7.30413 -6.64931 -6.23253 -4.08324 2.87096 3.15288 3.21043 3.24274 3.30295 3.78315 4.04406 4.48301 4.66087 4.79111 4.94296 5.09480 5.21901 5.33450 5.48494 5.82074 5.89132 6.18547 6.27685 6.49208 6.64610 7.08269 7.24374 7.36735 7.42068 7.53536 7.73011 7.78652 7.89083 8.24858 8.28089 8.50375 8.79502 8.92068 9.05717 9.18958 10.36168 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.007504 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.141047 B = 3730.240234 C = 4930.139149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.804 5.804 2 C 0.075 3.925 3 Si 0.903 3.097 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.462 4.462 8 H 0.072 0.928 9 C 0.067 3.933 10 C -0.139 4.139 11 C -0.145 4.145 12 C -0.199 4.199 13 C -0.179 4.179 14 C 0.112 3.888 15 N -0.742 5.742 16 C 0.110 3.890 17 C 0.098 3.902 18 H 0.108 0.892 19 O -0.547 6.547 20 C 0.048 3.952 21 O -0.564 6.564 22 H 0.276 0.724 23 H 0.119 0.881 24 H 0.083 0.917 25 H 0.083 0.917 26 H 0.085 0.915 27 H 0.401 0.599 28 H 0.048 0.952 29 H 0.054 0.946 30 H 0.372 0.628 31 H 0.050 0.950 32 H 0.056 0.944 33 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.176 -8.796 3.450 11.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.141 4.141 3 Si 0.728 3.272 4 H -0.186 1.186 5 H -0.200 1.200 6 H -0.203 1.203 7 C -0.493 4.493 8 H 0.090 0.910 9 C 0.062 3.938 10 C -0.160 4.160 11 C -0.165 4.165 12 C -0.219 4.219 13 C -0.202 4.202 14 C 0.013 3.987 15 N -0.378 5.378 16 C -0.017 4.017 17 C 0.038 3.962 18 H 0.126 0.874 19 O -0.352 6.352 20 C -0.031 4.031 21 O -0.369 6.369 22 H 0.087 0.913 23 H 0.137 0.863 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.104 0.896 27 H 0.237 0.763 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.219 0.781 31 H 0.068 0.932 32 H 0.075 0.925 33 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 6.814 -7.712 3.796 10.969 hybrid contribution 0.461 -0.142 -0.111 0.495 sum 7.276 -7.853 3.686 11.322 Atomic orbital electron populations 1.69843 1.07326 1.28510 1.37437 1.25764 0.94680 1.00842 0.92786 0.86344 0.80957 0.81545 0.78327 1.18575 1.19956 1.20265 1.19203 0.96634 0.90980 1.42525 0.90959 1.17253 0.93716 0.90273 0.92557 1.20847 0.98221 0.96903 1.00057 1.20288 0.99915 0.93432 1.02868 1.20123 0.99549 0.96057 1.06187 1.20009 0.99463 0.94770 1.05973 1.17910 0.90103 0.94186 0.96473 1.43752 1.30133 1.06135 1.57814 1.21529 0.94446 0.89018 0.96662 1.22146 0.86930 0.93416 0.93718 0.87391 1.86645 1.57683 1.48983 1.41863 1.22858 0.89304 0.97753 0.93190 1.86567 1.49727 1.35930 1.64657 0.91328 0.86312 0.89898 0.89833 0.89649 0.76306 0.93408 0.92790 0.78141 0.93192 0.92546 0.77755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.39 10.88 55.55 0.60 -20.79 16 2 C 0.07 1.93 5.19 -17.33 -0.09 1.84 16 3 Si 0.90 19.38 29.59 -169.99 -5.03 14.35 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.46 -12.33 8.51 -37.88 -0.32 -12.65 16 8 H 0.07 1.87 6.68 -52.49 -0.35 1.52 16 9 C 0.07 1.79 5.58 -106.63 -0.60 1.19 16 10 C -0.14 -3.73 8.63 -39.29 -0.34 -4.06 16 11 C -0.15 -3.54 9.96 -39.98 -0.40 -3.94 16 12 C -0.20 -4.58 10.04 -39.36 -0.40 -4.98 16 13 C -0.18 -4.07 9.30 -39.42 -0.37 -4.44 16 14 C 0.11 2.72 6.68 -83.29 -0.56 2.16 16 15 N -0.74 -15.27 5.52 -58.20 -0.32 -15.59 16 16 C 0.11 1.72 4.57 -4.04 -0.02 1.70 16 17 C 0.10 1.35 3.34 -26.73 -0.09 1.26 16 18 H 0.11 1.64 8.14 -51.93 -0.42 1.21 16 19 O -0.55 -8.25 13.05 -40.11 -0.52 -8.77 16 20 C 0.05 0.50 6.68 37.16 0.25 0.75 16 21 O -0.56 -6.38 13.62 -40.11 -0.55 -6.92 16 22 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 23 H 0.12 3.28 6.14 -52.49 -0.32 2.96 16 24 H 0.08 1.83 8.06 -52.49 -0.42 1.40 16 25 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 26 H 0.09 1.70 6.73 -52.48 -0.35 1.35 16 27 H 0.40 8.58 6.57 -40.82 -0.27 8.32 16 28 H 0.05 0.70 7.94 -51.93 -0.41 0.29 16 29 H 0.05 0.82 7.94 -51.93 -0.41 0.41 16 30 H 0.37 4.30 9.05 45.56 0.41 4.71 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.38 2.29 9.12 45.56 0.42 2.71 16 LS Contribution 281.46 15.07 4.24 4.24 Total: -1.00 -31.06 281.46 -7.04 -38.09 By element: Atomic # 1 Polarization: 19.11 SS G_CDS: -2.54 Total: 16.57 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: -2.92 Total: -21.18 kcal Atomic # 7 Polarization: -36.66 SS G_CDS: 0.28 Total: -36.38 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -1.07 Total: -15.69 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.03 Total: 14.35 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -31.06 -7.04 -38.09 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252065175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.628 kcal (2) G-P(sol) polarization free energy of solvation -31.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds