Wall clock time and date at job start Sun Mar 29 2020 21:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86801 * 119.99976 * 2 1 4 4 H 1.48501 * 109.47222 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47096 * 299.99891 * 3 2 1 6 6 H 1.48494 * 109.46903 * 60.00253 * 3 2 1 7 7 C 1.39932 * 120.00109 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00072 * 195.15775 * 7 2 1 9 9 C 1.41045 * 119.99924 * 15.16864 * 7 2 1 10 10 C 1.40730 * 120.30934 * 25.66888 * 9 7 2 11 11 C 1.36445 * 119.95228 * 180.27909 * 10 9 7 12 12 C 1.38904 * 120.59790 * 359.72891 * 11 10 9 13 13 C 1.38165 * 120.62273 * 359.97438 * 12 11 10 14 14 C 1.38749 * 120.03061 * 0.02562 * 13 12 11 15 15 N 1.38730 * 120.29602 * 180.02562 * 14 13 12 16 16 C 1.46500 * 120.00178 * 359.97438 * 15 14 13 17 17 C 1.52996 * 109.46946 * 180.02562 * 16 15 14 18 18 H 1.09001 * 109.47513 * 59.99994 * 17 16 15 19 19 O 1.42895 * 109.47231 * 299.99738 * 17 16 15 20 20 C 1.53006 * 109.47087 * 180.02562 * 17 16 15 21 21 O 1.42897 * 109.47336 * 185.00200 * 20 17 16 22 22 H 0.96997 * 120.00005 * 0.02562 * 1 2 3 23 23 H 1.07999 * 120.02270 * 0.02562 * 10 9 7 24 24 H 1.08001 * 119.70326 * 179.74567 * 11 10 9 25 25 H 1.07997 * 119.68932 * 180.02562 * 12 11 10 26 26 H 1.08006 * 119.98429 * 179.97438 * 13 12 11 27 27 H 0.97003 * 119.99767 * 180.02562 * 15 14 13 28 28 H 1.09001 * 109.47020 * 59.99873 * 16 15 14 29 29 H 1.09002 * 109.47165 * 300.00108 * 16 15 14 30 30 H 0.96703 * 114.00368 * 299.99962 * 19 17 16 31 31 H 1.08998 * 109.46827 * 64.99632 * 20 17 16 32 32 H 1.09000 * 109.46812 * 304.99949 * 20 17 16 33 33 H 0.96694 * 113.99805 * 180.02562 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 3.7028 1.3464 -0.0006 5 1 1.8840 2.3964 -1.2125 6 1 1.8840 2.3963 1.2125 7 6 2.0084 -1.2118 -0.0005 8 1 3.0602 -1.2282 0.2440 9 6 1.3401 -2.4119 -0.3207 10 6 0.1909 -2.3900 -1.1328 11 6 -0.4532 -3.5547 -1.4333 12 6 0.0177 -4.7684 -0.9490 13 6 1.1471 -4.8187 -0.1547 14 6 1.8224 -3.6501 0.1670 15 7 2.9573 -3.6942 0.9636 16 6 3.4475 -4.9787 1.4698 17 6 4.7016 -4.7485 2.3153 18 1 4.4597 -4.0959 3.1541 19 8 5.7122 -4.1363 1.5115 20 6 5.2140 -6.0900 2.8434 21 8 6.3147 -5.8653 3.7265 22 1 -0.4850 0.8400 -0.0004 23 1 -0.1831 -1.4515 -1.5146 24 1 -1.3371 -3.5327 -2.0535 25 1 -0.5034 -5.6814 -1.1963 26 1 1.5040 -5.7680 0.2166 27 1 3.4258 -2.8745 1.1862 28 1 3.6890 -5.6314 0.6309 29 1 2.6768 -5.4455 2.0832 30 1 5.9775 -4.6626 0.7449 31 1 5.5393 -6.7092 2.0074 32 1 4.4139 -6.5979 3.3819 33 1 6.6910 -6.6741 4.0996 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001252065175.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:08 Heat of formation + Delta-G solvation = -106.594990 kcal Electronic energy + Delta-G solvation = -16519.608428 eV Core-core repulsion = 13736.669160 eV Total energy + Delta-G solvation = -2782.939269 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.00745 -39.02375 -36.93537 -35.66021 -35.27483 -31.92485 -31.14701 -29.28841 -27.03763 -25.76066 -23.25322 -22.21048 -21.61891 -19.09551 -18.45840 -17.84656 -17.56246 -17.14682 -16.66077 -16.11365 -15.58165 -15.12365 -14.86111 -14.36139 -14.21844 -14.00183 -13.93973 -13.54971 -13.28454 -12.98991 -12.73119 -12.59073 -12.11402 -11.84161 -11.43509 -11.24222 -11.07965 -10.99351 -10.94379 -10.55441 -9.23135 -8.55338 -8.02252 -6.04883 1.05135 1.35085 1.38860 1.52083 1.53283 2.25088 2.69809 2.86324 3.40952 3.51822 3.86162 4.01225 4.09875 4.23540 4.49637 4.51245 4.56572 4.67093 4.71343 4.85790 5.07398 5.18452 5.36172 5.48160 5.67116 5.90499 5.99918 6.32263 6.39681 6.63158 6.77840 6.90522 6.91938 7.04040 7.24171 7.32582 8.47790 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.020476 B = 0.007504 C = 0.005678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.141047 B = 3730.240234 C = 4930.139149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.031 3.969 3 Si 0.974 3.026 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.270 1.270 7 C -0.490 4.490 8 H 0.069 0.931 9 C 0.025 3.975 10 C -0.163 4.163 11 C -0.163 4.163 12 C -0.190 4.190 13 C -0.186 4.186 14 C 0.112 3.888 15 N -0.745 5.745 16 C 0.109 3.891 17 C 0.101 3.899 18 H 0.087 0.913 19 O -0.570 6.570 20 C 0.055 3.945 21 O -0.589 6.589 22 H 0.281 0.719 23 H 0.097 0.903 24 H 0.100 0.900 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.393 0.607 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.386 0.614 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.100 -10.588 3.881 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.181 4.181 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.521 4.521 8 H 0.087 0.913 9 C 0.021 3.979 10 C -0.184 4.184 11 C -0.183 4.183 12 C -0.209 4.209 13 C -0.210 4.210 14 C 0.011 3.989 15 N -0.378 5.378 16 C -0.016 4.016 17 C 0.041 3.959 18 H 0.105 0.895 19 O -0.377 6.377 20 C -0.023 4.023 21 O -0.398 6.398 22 H 0.091 0.909 23 H 0.115 0.885 24 H 0.118 0.882 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.228 0.772 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.235 0.765 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 7.764 -9.557 4.242 13.023 hybrid contribution 0.189 0.256 -0.226 0.390 sum 7.953 -9.301 4.016 12.880 Atomic orbital electron populations 1.69915 1.08685 1.29561 1.38603 1.26559 0.95428 1.03950 0.92141 0.85281 0.79350 0.77211 0.78559 1.18528 1.19285 1.19554 1.19376 0.96626 0.92039 1.44040 0.91283 1.17613 0.94667 0.91764 0.93880 1.20819 0.99267 0.97035 1.01279 1.20523 1.00660 0.93419 1.03669 1.20556 0.99218 0.96639 1.04518 1.20377 0.99228 0.95624 1.05740 1.18133 0.90844 0.93864 0.96057 1.43935 1.29016 1.07892 1.56992 1.21755 0.95409 0.86854 0.97542 1.22063 0.86136 0.94997 0.92678 0.89483 1.86607 1.57940 1.50310 1.42829 1.22741 0.89843 0.95569 0.94157 1.86496 1.50078 1.38184 1.65027 0.90861 0.88512 0.88200 0.86470 0.86234 0.77249 0.91599 0.91792 0.76521 0.90852 0.90691 0.75121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.20 10.88 21.83 0.24 -45.96 16 2 C 0.03 1.65 5.19 85.25 0.44 2.09 16 3 Si 0.97 40.70 29.59 68.60 2.03 42.73 16 4 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 5 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.49 -26.95 8.51 23.37 0.20 -26.75 16 8 H 0.07 3.69 6.68 -2.91 -0.02 3.67 16 9 C 0.03 1.39 5.58 -21.17 -0.12 1.27 16 10 C -0.16 -8.96 8.63 22.46 0.19 -8.77 16 11 C -0.16 -7.89 9.96 22.01 0.22 -7.67 16 12 C -0.19 -8.29 10.04 22.41 0.22 -8.06 16 13 C -0.19 -8.04 9.30 22.37 0.21 -7.83 16 14 C 0.11 5.36 6.68 38.99 0.26 5.62 16 15 N -0.74 -30.13 5.52 -338.05 -1.87 -32.00 16 16 C 0.11 3.15 4.57 86.38 0.39 3.54 16 17 C 0.10 2.60 3.34 30.59 0.10 2.70 16 18 H 0.09 2.59 8.14 -2.39 -0.02 2.58 16 19 O -0.57 -16.44 13.05 -144.32 -1.88 -18.33 16 20 C 0.06 0.98 6.68 71.98 0.48 1.46 16 21 O -0.59 -11.81 13.62 -144.32 -1.97 -13.77 16 22 H 0.28 14.12 8.30 -92.71 -0.77 13.35 16 23 H 0.10 5.63 6.14 -2.91 -0.02 5.61 16 24 H 0.10 4.35 8.06 -2.91 -0.02 4.33 16 25 H 0.12 4.30 8.06 -2.91 -0.02 4.27 16 26 H 0.12 4.27 6.73 -2.91 -0.02 4.25 16 27 H 0.39 17.02 6.57 -92.71 -0.61 16.41 16 28 H 0.07 1.70 7.94 -2.39 -0.02 1.68 16 29 H 0.06 1.75 7.94 -2.39 -0.02 1.73 16 30 H 0.39 8.22 9.05 -74.06 -0.67 7.55 16 31 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.40 3.69 9.12 -74.06 -0.68 3.02 16 Total: -1.00 -67.98 281.46 -1.65 -69.63 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.80 Total: 40.10 kcal Atomic # 6 Polarization: -45.00 SS G_CDS: 2.61 Total: -42.39 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -1.63 Total: -77.96 kcal Atomic # 8 Polarization: -28.25 SS G_CDS: -3.85 Total: -32.10 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Total: -67.98 -1.65 -69.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001252065175.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.966 kcal (2) G-P(sol) polarization free energy of solvation -67.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds