Wall clock time and date at job start Sun Mar 29 2020 21:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47434 * 2 1 4 4 C 1.52996 * 109.47285 * 239.99523 * 2 1 3 5 5 C 1.53000 * 109.47250 * 175.00346 * 4 2 1 6 6 F 1.39895 * 109.47112 * 59.99969 * 5 4 2 7 7 F 1.39900 * 109.47118 * 180.02562 * 5 4 2 8 8 F 1.39906 * 109.46966 * 300.00493 * 5 4 2 9 9 N 1.46900 * 109.46748 * 119.99487 * 2 1 3 10 10 C 1.47483 * 111.00039 * 33.49399 * 9 2 1 11 11 C 1.53511 * 87.93175 * 221.29282 * 10 9 2 12 12 C 1.50697 * 114.17139 * 139.67163 * 11 10 9 13 13 H 1.07999 * 119.99811 * 266.15950 * 12 11 10 14 14 C 1.37879 * 120.00042 * 86.15594 * 12 11 10 15 15 N 1.31508 * 120.00053 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99783 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47283 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46825 * 119.99887 * 16 14 12 19 19 H 1.48499 * 109.47237 * 239.99865 * 16 14 12 20 20 C 1.47482 * 111.00615 * 297.52035 * 9 2 1 21 21 H 1.09004 * 109.47418 * 289.82192 * 1 2 3 22 22 H 1.09008 * 109.46857 * 49.81564 * 1 2 3 23 23 H 1.08993 * 109.47549 * 169.81913 * 1 2 3 24 24 H 1.09000 * 109.47187 * 55.00576 * 4 2 1 25 25 H 1.09000 * 109.47372 * 295.00296 * 4 2 1 26 26 H 1.08999 * 113.47690 * 336.06113 * 10 9 2 27 27 H 1.08999 * 113.47420 * 106.52482 * 10 9 2 28 28 H 1.09005 * 114.16987 * 272.37299 * 11 10 9 29 29 H 0.97000 * 119.99565 * 179.97438 * 15 14 12 30 30 H 1.09001 * 113.47428 * 253.47328 * 20 9 2 31 31 H 1.09003 * 113.47089 * 23.87740 * 20 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 9 4.1226 -1.2031 -0.1741 7 9 4.0311 -1.2725 -2.4561 8 9 3.9350 0.7346 -1.3695 9 7 2.0195 -0.6924 1.1995 10 6 1.1131 -1.7909 1.5827 11 6 1.3038 -1.3639 3.0448 12 6 0.0447 -1.4130 3.8713 13 1 -0.5623 -0.5268 3.9838 14 6 -0.3326 -2.5893 4.4837 15 7 0.4067 -3.6683 4.3470 16 14 -1.8939 -2.6502 5.5075 17 1 -2.5412 -1.3136 5.5033 18 1 -2.8253 -3.6526 4.9305 19 1 -1.5567 -3.0330 6.9021 20 6 1.5959 0.0099 2.4253 21 1 -0.3634 0.3485 0.9668 22 1 -0.3633 0.6632 -0.7852 23 1 -0.3634 -1.0114 -0.1816 24 1 1.6055 -0.2618 -2.1369 25 1 1.7516 -1.7716 -1.2055 26 1 0.0934 -1.6585 1.2211 27 1 1.5136 -2.7807 1.3636 28 1 2.1617 -1.8236 3.5358 29 1 0.1414 -4.4957 4.7782 30 1 2.4056 0.5463 2.9202 31 1 0.7056 0.6237 2.2883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255646824.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:22 Heat of formation + Delta-G solvation = -117.884473 kcal Electronic energy + Delta-G solvation = -17747.570299 eV Core-core repulsion = 14422.284741 eV Total energy + Delta-G solvation = -3325.285558 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.70328 -47.31052 -47.02424 -39.62080 -34.22896 -32.27399 -28.97457 -27.38002 -24.93734 -24.37856 -23.10705 -20.34407 -18.24790 -18.08507 -17.87272 -17.15022 -16.77745 -15.18817 -14.58132 -14.49731 -14.18122 -13.92521 -13.75446 -13.65002 -13.28919 -13.21431 -12.90717 -12.66085 -12.34313 -12.17439 -11.54687 -11.16879 -11.09154 -11.00553 -10.60337 -10.57072 -10.32618 -9.73304 -9.17339 -8.94542 -8.45048 -7.92468 -6.06878 -4.11653 3.12980 3.25867 3.34661 3.37499 4.13486 4.27331 4.37745 4.42497 4.83636 5.12794 5.23847 5.25310 5.50699 5.53725 5.68825 5.87089 5.92330 6.10752 6.34123 6.43421 6.53229 6.71285 6.77235 7.14480 7.16009 7.72009 7.89185 8.04014 8.36211 8.92076 9.53556 11.02534 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.048336 B = 0.006279 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.142621 B = 4458.201919 C = 4618.741810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.040 3.960 3 H 0.082 0.918 4 C -0.151 4.151 5 C 0.455 3.545 6 F -0.159 7.159 7 F -0.198 7.198 8 F -0.192 7.192 9 N -0.476 5.476 10 C -0.011 4.011 11 C 0.044 3.956 12 C -0.515 4.515 13 H 0.057 0.943 14 C 0.067 3.933 15 N -0.885 5.885 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C -0.008 4.008 21 H 0.077 0.923 22 H 0.053 0.947 23 H 0.068 0.932 24 H 0.101 0.899 25 H 0.107 0.893 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.261 0.739 30 H 0.061 0.939 31 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.912 5.890 -11.027 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.070 4.070 3 H 0.100 0.900 4 C -0.190 4.190 5 C 0.401 3.599 6 F -0.140 7.140 7 F -0.180 7.180 8 F -0.174 7.174 9 N -0.199 5.199 10 C -0.139 4.139 11 C 0.025 3.975 12 C -0.554 4.554 13 H 0.076 0.924 14 C -0.136 4.136 15 N -0.522 5.522 16 Si 0.717 3.283 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.136 4.136 21 H 0.095 0.905 22 H 0.072 0.928 23 H 0.087 0.913 24 H 0.119 0.881 25 H 0.125 0.875 26 H 0.089 0.911 27 H 0.080 0.920 28 H 0.081 0.919 29 H 0.071 0.929 30 H 0.079 0.921 31 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.683 5.588 -11.151 12.758 hybrid contribution -1.466 0.053 0.450 1.535 sum 1.217 5.641 -10.701 12.158 Atomic orbital electron populations 1.22436 0.95802 1.02545 1.03060 1.22051 0.94467 0.98446 0.91987 0.89964 1.22850 0.88603 1.05963 1.01589 1.20478 0.92691 0.73217 0.73491 1.93288 1.87190 1.83505 1.50034 1.93140 1.91053 1.81454 1.52343 1.93129 1.93422 1.34661 1.96194 1.69225 1.43394 1.07505 0.99728 1.24341 0.94754 0.94298 1.00523 1.20052 0.97526 0.89014 0.90952 1.21061 1.07434 0.96111 1.30772 0.92431 1.25016 0.96814 0.95816 0.95943 1.69980 1.37853 1.00779 1.43599 0.86588 0.83438 0.78056 0.80222 1.19748 1.21032 1.20920 1.24076 0.98054 0.99870 0.91620 0.90460 0.92844 0.91316 0.88067 0.87492 0.91078 0.92004 0.91916 0.92930 0.92069 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.58 7.72 37.16 0.29 -2.29 16 2 C 0.04 0.62 2.35 -67.72 -0.16 0.46 16 3 H 0.08 1.23 7.66 -51.92 -0.40 0.83 16 4 C -0.15 -2.01 4.93 -26.73 -0.13 -2.14 16 5 C 0.46 6.76 3.16 37.16 0.12 6.88 16 6 F -0.16 -2.84 15.62 2.25 0.04 -2.80 16 7 F -0.20 -2.85 17.32 2.25 0.04 -2.81 16 8 F -0.19 -2.87 16.71 2.25 0.04 -2.84 16 9 N -0.48 -9.17 4.68 -236.58 -1.11 -10.28 16 10 C -0.01 -0.23 6.82 -7.54 -0.05 -0.28 16 11 C 0.04 1.07 3.77 -91.24 -0.34 0.72 16 12 C -0.52 -13.63 8.82 -34.44 -0.30 -13.94 16 13 H 0.06 1.49 7.81 -52.49 -0.41 1.08 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.88 -25.17 13.26 55.43 0.74 -24.44 16 16 Si 0.89 20.66 29.54 -169.99 -5.02 15.64 16 17 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 C -0.01 -0.16 7.10 -7.54 -0.05 -0.21 16 21 H 0.08 1.24 5.82 -51.93 -0.30 0.94 16 22 H 0.05 0.62 8.14 -51.92 -0.42 0.20 16 23 H 0.07 1.01 6.52 -51.93 -0.34 0.67 16 24 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.11 1.43 8.05 -51.93 -0.42 1.01 16 26 H 0.07 1.49 4.79 -51.93 -0.25 1.24 16 27 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 28 H 0.06 1.72 8.11 -51.93 -0.42 1.30 16 29 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.16 5.91 -51.93 -0.31 0.85 16 LS Contribution 264.14 15.07 3.98 3.98 Total: -1.00 -27.84 264.14 -5.71 -33.55 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -3.67 Total: -0.91 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: -0.74 Total: -9.09 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.37 Total: -34.72 kcal Atomic # 9 Polarization: -8.56 SS G_CDS: 0.11 Total: -8.45 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -27.84 -5.71 -33.55 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255646824.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.338 kcal (2) G-P(sol) polarization free energy of solvation -27.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds