Wall clock time and date at job start Sun Mar 29 2020 21:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.47434 * 2 1 4 4 C 1.52996 * 109.47285 * 239.99523 * 2 1 3 5 5 C 1.53000 * 109.47250 * 175.00346 * 4 2 1 6 6 F 1.39895 * 109.47112 * 59.99969 * 5 4 2 7 7 F 1.39900 * 109.47118 * 180.02562 * 5 4 2 8 8 F 1.39906 * 109.46966 * 300.00493 * 5 4 2 9 9 N 1.46900 * 109.46748 * 119.99487 * 2 1 3 10 10 C 1.47483 * 111.00039 * 33.49399 * 9 2 1 11 11 C 1.53511 * 87.93175 * 221.29282 * 10 9 2 12 12 C 1.50697 * 114.17139 * 139.67163 * 11 10 9 13 13 H 1.07999 * 119.99811 * 266.15950 * 12 11 10 14 14 C 1.37879 * 120.00042 * 86.15594 * 12 11 10 15 15 N 1.31508 * 120.00053 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99783 * 180.02562 * 14 12 11 17 17 H 1.48506 * 109.47283 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46825 * 119.99887 * 16 14 12 19 19 H 1.48499 * 109.47237 * 239.99865 * 16 14 12 20 20 C 1.47482 * 111.00615 * 297.52035 * 9 2 1 21 21 H 1.09004 * 109.47418 * 289.82192 * 1 2 3 22 22 H 1.09008 * 109.46857 * 49.81564 * 1 2 3 23 23 H 1.08993 * 109.47549 * 169.81913 * 1 2 3 24 24 H 1.09000 * 109.47187 * 55.00576 * 4 2 1 25 25 H 1.09000 * 109.47372 * 295.00296 * 4 2 1 26 26 H 1.08999 * 113.47690 * 336.06113 * 10 9 2 27 27 H 1.08999 * 113.47420 * 106.52482 * 10 9 2 28 28 H 1.09005 * 114.16987 * 272.37299 * 11 10 9 29 29 H 0.97000 * 119.99565 * 179.97438 * 15 14 12 30 30 H 1.09001 * 113.47428 * 253.47328 * 20 9 2 31 31 H 1.09003 * 113.47089 * 23.87740 * 20 9 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3135 6 9 4.1226 -1.2031 -0.1741 7 9 4.0311 -1.2725 -2.4561 8 9 3.9350 0.7346 -1.3695 9 7 2.0195 -0.6924 1.1995 10 6 1.1131 -1.7909 1.5827 11 6 1.3038 -1.3639 3.0448 12 6 0.0447 -1.4130 3.8713 13 1 -0.5623 -0.5268 3.9838 14 6 -0.3326 -2.5893 4.4837 15 7 0.4067 -3.6683 4.3470 16 14 -1.8939 -2.6502 5.5075 17 1 -2.5412 -1.3136 5.5033 18 1 -2.8253 -3.6526 4.9305 19 1 -1.5567 -3.0330 6.9021 20 6 1.5959 0.0099 2.4253 21 1 -0.3634 0.3485 0.9668 22 1 -0.3633 0.6632 -0.7852 23 1 -0.3634 -1.0114 -0.1816 24 1 1.6055 -0.2618 -2.1369 25 1 1.7516 -1.7716 -1.2055 26 1 0.0934 -1.6585 1.2211 27 1 1.5136 -2.7807 1.3636 28 1 2.1617 -1.8236 3.5358 29 1 0.1414 -4.4957 4.7782 30 1 2.4056 0.5463 2.9202 31 1 0.7056 0.6237 2.2883 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255646824.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:22 Heat of formation + Delta-G solvation = -134.903362 kcal Electronic energy + Delta-G solvation = -17748.308293 eV Core-core repulsion = 14422.284741 eV Total energy + Delta-G solvation = -3326.023552 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.104 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -50.89760 -48.46910 -48.29555 -41.20295 -35.71151 -34.15629 -30.24249 -29.06480 -26.64725 -26.07796 -24.41053 -21.81811 -19.81504 -19.35264 -19.11994 -18.76714 -18.19536 -16.86563 -16.29625 -16.17777 -15.40704 -15.24214 -15.11285 -14.83520 -14.53064 -14.50502 -14.32052 -14.15909 -13.90408 -13.42462 -13.06481 -12.89985 -12.77827 -12.36034 -12.26095 -12.15605 -11.84107 -11.45927 -11.02501 -10.80016 -10.46511 -9.50679 -8.12135 -6.23302 1.42850 1.45375 1.56288 1.98094 2.44187 2.98274 3.09962 3.17696 3.26493 3.44568 3.90610 4.05800 4.30918 4.36501 4.45697 4.51672 4.60677 4.63094 4.73209 4.96038 5.06069 5.11509 5.32202 5.34564 5.57721 5.67081 5.89377 6.33000 6.43712 6.87018 7.45299 8.97676 Molecular weight = 237.10amu Principal moments of inertia in cm(-1) A = 0.048336 B = 0.006279 C = 0.006061 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.142621 B = 4458.201919 C = 4618.741810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.036 3.964 3 H 0.093 0.907 4 C -0.145 4.145 5 C 0.453 3.547 6 F -0.182 7.182 7 F -0.195 7.195 8 F -0.192 7.192 9 N -0.480 5.480 10 C 0.006 3.994 11 C 0.020 3.980 12 C -0.524 4.524 13 H 0.061 0.939 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.956 3.044 17 H -0.262 1.262 18 H -0.281 1.281 19 H -0.284 1.284 20 C 0.007 3.993 21 H 0.059 0.941 22 H 0.088 0.912 23 H 0.063 0.937 24 H 0.142 0.858 25 H 0.105 0.895 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.020 0.980 29 H 0.261 0.739 30 H 0.063 0.937 31 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.606 7.199 -12.299 14.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.073 4.073 3 H 0.111 0.889 4 C -0.183 4.183 5 C 0.399 3.601 6 F -0.164 7.164 7 F -0.177 7.177 8 F -0.174 7.174 9 N -0.203 5.203 10 C -0.123 4.123 11 C 0.001 3.999 12 C -0.562 4.562 13 H 0.079 0.921 14 C -0.185 4.185 15 N -0.562 5.562 16 Si 0.782 3.218 17 H -0.186 1.186 18 H -0.206 1.206 19 H -0.210 1.210 20 C -0.122 4.122 21 H 0.077 0.923 22 H 0.107 0.893 23 H 0.082 0.918 24 H 0.160 0.840 25 H 0.124 0.876 26 H 0.100 0.900 27 H 0.057 0.943 28 H 0.039 0.961 29 H 0.070 0.930 30 H 0.082 0.918 31 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 1.379 6.918 -12.433 14.295 hybrid contribution -0.984 -0.307 0.797 1.303 sum 0.396 6.611 -11.636 13.388 Atomic orbital electron populations 1.22352 0.94513 1.03052 1.03337 1.22186 0.95539 0.98737 0.90833 0.88862 1.22889 0.87192 1.06109 1.02089 1.20747 0.93492 0.73020 0.72848 1.93248 1.87702 1.83958 1.51444 1.93145 1.91134 1.81411 1.51969 1.93129 1.93532 1.34559 1.96144 1.69135 1.43218 1.06842 1.01069 1.24059 0.95639 0.94070 0.98529 1.19991 0.95534 0.92195 0.92168 1.21392 1.07917 0.96140 1.30786 0.92052 1.25819 0.99928 0.95500 0.97266 1.70114 1.39770 1.01378 1.44963 0.85537 0.79617 0.78400 0.78274 1.18624 1.20649 1.21002 1.23894 0.98735 0.97880 0.91665 0.92254 0.89284 0.91823 0.84032 0.87638 0.90041 0.94308 0.96141 0.93001 0.91831 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.43 7.72 71.98 0.56 -3.87 16 2 C 0.04 1.02 2.35 44.91 0.11 1.12 16 3 H 0.09 2.47 7.66 -2.38 -0.02 2.45 16 4 C -0.14 -3.40 4.93 30.59 0.15 -3.25 16 5 C 0.45 12.57 3.16 71.98 0.23 12.80 16 6 F -0.18 -6.41 15.62 44.97 0.70 -5.70 16 7 F -0.19 -5.22 17.32 44.97 0.78 -4.44 16 8 F -0.19 -5.30 16.71 44.97 0.75 -4.54 16 9 N -0.48 -18.11 4.68 -902.41 -4.23 -22.34 16 10 C 0.01 0.26 6.82 83.58 0.57 0.83 16 11 C 0.02 1.01 3.77 -11.20 -0.04 0.97 16 12 C -0.52 -27.89 8.82 25.60 0.23 -27.66 16 13 H 0.06 3.14 7.81 -2.91 -0.02 3.12 16 14 C 0.01 0.76 5.46 84.66 0.46 1.22 16 15 N -0.92 -53.80 13.26 21.45 0.28 -53.52 16 16 Si 0.96 42.42 29.54 68.60 2.03 44.45 16 17 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 C 0.01 0.27 7.10 83.58 0.59 0.87 16 21 H 0.06 1.74 5.82 -2.38 -0.01 1.73 16 22 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 23 H 0.06 1.69 6.52 -2.39 -0.02 1.67 16 24 H 0.14 2.23 8.14 -2.39 -0.02 2.21 16 25 H 0.11 2.57 8.05 -2.39 -0.02 2.55 16 26 H 0.08 3.36 4.79 -2.39 -0.01 3.35 16 27 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.02 1.18 8.11 -2.38 -0.02 1.16 16 29 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 30 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 31 H 0.07 2.78 5.91 -2.39 -0.01 2.77 16 Total: -1.00 -60.48 264.14 4.30 -56.18 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 1.14 Total: 6.90 kcal Atomic # 6 Polarization: -19.82 SS G_CDS: 2.85 Total: -16.97 kcal Atomic # 7 Polarization: -71.92 SS G_CDS: -3.94 Total: -75.86 kcal Atomic # 9 Polarization: -16.92 SS G_CDS: 2.23 Total: -14.69 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -60.48 4.30 -56.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255646824.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.727 kcal (2) G-P(sol) polarization free energy of solvation -60.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds