Wall clock time and date at job start Sun Mar 29 2020 21:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00460 * 2 1 4 4 H 1.48499 * 109.46940 * 270.00174 * 3 2 1 5 5 H 1.48505 * 109.46820 * 29.99587 * 3 2 1 6 6 H 1.48491 * 109.47386 * 149.99884 * 3 2 1 7 7 C 1.37881 * 119.99847 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99748 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00137 * 0.02562 * 7 2 1 10 10 O 1.42901 * 113.27836 * 313.06973 * 9 7 2 11 11 C 1.53495 * 114.20843 * 180.02562 * 9 7 2 12 12 N 1.47070 * 87.98291 * 220.14756 * 11 9 7 13 13 C 1.34777 * 136.05069 * 207.08288 * 12 11 9 14 14 O 1.21277 * 120.00596 * 0.02562 * 13 12 11 15 15 C 1.50705 * 119.99345 * 179.97438 * 13 12 11 16 16 C 1.54417 * 129.01046 * 179.97438 * 15 13 12 17 17 C 1.54415 * 78.96196 * 180.67932 * 16 15 13 18 18 C 1.54890 * 84.49649 * 41.83543 * 17 16 15 19 19 C 1.54887 * 84.49331 * 318.10569 * 17 16 15 20 20 C 1.47060 * 87.88427 * 27.34338 * 12 11 9 21 21 H 0.97001 * 119.99623 * 0.02562 * 1 2 3 22 22 H 0.96693 * 114.00523 * 46.93227 * 10 9 7 23 23 H 1.08999 * 113.46841 * 105.36292 * 11 9 7 24 24 H 1.08996 * 113.46595 * 334.92779 * 11 9 7 25 25 H 1.09002 * 114.93291 * 68.15966 * 16 15 13 26 26 H 1.09001 * 114.93352 * 293.19717 * 16 15 13 27 27 H 1.09004 * 129.01249 * 179.33096 * 17 16 15 28 28 H 1.08999 * 114.97330 * 70.65224 * 18 17 16 29 29 H 1.09000 * 114.97845 * 205.76850 * 18 17 16 30 30 H 1.09006 * 114.97975 * 154.17274 * 19 17 16 31 31 H 1.08996 * 114.98180 * 289.34993 * 19 17 16 32 32 H 1.09000 * 113.47396 * 87.44142 * 20 12 11 33 33 H 1.09009 * 113.46541 * 217.88018 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6526 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 8 0.1919 -2.5407 0.9568 11 6 2.1487 -3.7443 -0.0016 12 7 1.2078 -4.3589 -0.9502 13 6 0.8327 -5.6134 -1.2697 14 8 1.3284 -6.5595 -0.6953 15 6 -0.2037 -5.8403 -2.3400 16 6 -0.7811 -7.1719 -2.8673 17 6 -1.5397 -6.1527 -3.7447 18 6 -0.1695 -5.4362 -3.8359 19 6 -1.6699 -5.3433 -2.4306 20 6 0.8615 -3.0027 -1.4013 21 1 -0.4849 0.8401 -0.0004 22 1 -0.3717 -1.7550 0.9546 23 1 2.1869 -4.2517 0.9623 24 1 3.1374 -3.5665 -0.4244 25 1 -1.4013 -7.7174 -2.1560 26 1 -0.0703 -7.8006 -3.4035 27 1 -2.2735 -6.3352 -4.5299 28 1 0.5811 -5.9530 -4.4340 29 1 -0.2223 -4.3642 -4.0259 30 1 -1.7842 -4.2673 -2.5620 31 1 -2.3469 -5.7715 -1.6914 32 1 1.5109 -2.6294 -2.1931 33 1 -0.1971 -2.8784 -1.6298 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261815668.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:57 Heat of formation + Delta-G solvation = 34.135186 kcal Electronic energy + Delta-G solvation = -17182.913921 eV Core-core repulsion = 14406.077170 eV Total energy + Delta-G solvation = -2776.836750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -42.99051 -40.95636 -38.85936 -35.92281 -34.14018 -30.77497 -27.79786 -26.98597 -26.63873 -26.60285 -25.54013 -22.08715 -20.41428 -19.53734 -18.98052 -17.88252 -17.42211 -16.92100 -16.36251 -15.96765 -15.34247 -15.23603 -14.97901 -14.55585 -14.33753 -13.84437 -13.42754 -13.07072 -12.84204 -12.74460 -12.50670 -12.39654 -12.24333 -12.21001 -12.12337 -11.36767 -11.25616 -11.17525 -10.90564 -10.65283 -10.25252 -9.64523 -8.28626 -6.45886 1.41586 1.46977 1.50657 1.59928 1.87440 2.40202 2.93093 3.33398 3.35824 3.43895 3.46684 3.57299 3.59151 3.77218 4.11149 4.39050 4.49921 4.57159 4.59387 4.64242 4.75721 4.82270 4.86573 4.91661 4.93286 4.98529 5.00488 5.21321 5.44393 5.71512 5.88913 6.59902 6.80304 7.09194 7.28109 7.47033 8.77823 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038077 B = 0.006802 C = 0.006358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.167073 B = 4115.465182 C = 4402.921354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.033 3.967 3 Si 0.972 3.028 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.075 0.925 9 C 0.221 3.779 10 O -0.586 6.586 11 C 0.104 3.896 12 N -0.631 5.631 13 C 0.581 3.419 14 O -0.599 6.599 15 C -0.202 4.202 16 C -0.095 4.095 17 C -0.095 4.095 18 C -0.102 4.102 19 C -0.108 4.108 20 C 0.092 3.908 21 H 0.277 0.723 22 H 0.390 0.610 23 H 0.052 0.948 24 H 0.105 0.895 25 H 0.074 0.926 26 H 0.082 0.918 27 H 0.189 0.811 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.093 0.907 33 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.256 -4.646 -9.335 10.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.168 4.168 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.195 1.195 7 C -0.591 4.591 8 H 0.093 0.907 9 C 0.179 3.821 10 O -0.399 6.399 11 C -0.019 4.019 12 N -0.362 5.362 13 C 0.373 3.627 14 O -0.482 6.482 15 C -0.204 4.204 16 C -0.133 4.133 17 C -0.112 4.112 18 C -0.139 4.139 19 C -0.145 4.145 20 C -0.031 4.031 21 H 0.087 0.913 22 H 0.246 0.754 23 H 0.071 0.929 24 H 0.123 0.877 25 H 0.093 0.907 26 H 0.100 0.900 27 H 0.206 0.794 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.093 0.907 31 H 0.091 0.909 32 H 0.111 0.889 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.964 -5.791 -8.944 11.060 hybrid contribution 0.331 1.340 0.425 1.445 sum -2.633 -4.451 -8.519 9.966 Atomic orbital electron populations 1.69323 1.07190 1.29028 1.50199 1.25778 0.95782 1.02713 0.92490 0.85332 0.78438 0.78027 0.78509 1.19533 1.20841 1.19502 1.21646 0.94199 0.90422 1.52846 0.90699 1.19847 0.85412 0.91602 0.85219 1.86033 1.45750 1.48238 1.59899 1.23397 0.94709 0.91580 0.92202 1.49696 1.41930 1.05091 1.39502 1.18987 0.81646 0.80093 0.81985 1.90587 1.59412 1.42075 1.56168 1.24218 0.96694 1.03141 0.96391 1.23844 0.97995 0.93812 0.97659 1.24878 0.96322 0.93836 0.96200 1.24205 0.98370 1.01238 0.90103 1.24232 0.91390 1.00496 0.98427 1.24025 1.00414 0.77311 1.01333 0.91279 0.75438 0.92950 0.87701 0.90713 0.89967 0.79412 0.89776 0.90230 0.90689 0.90857 0.88903 0.91999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.69 11.01 21.45 0.24 -45.46 16 2 C 0.03 1.60 5.39 84.66 0.46 2.05 16 3 Si 0.97 38.70 29.54 68.60 2.03 40.73 16 4 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 6 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 7 C -0.55 -27.41 8.70 25.60 0.22 -27.19 16 8 H 0.07 3.58 7.81 -2.91 -0.02 3.56 16 9 C 0.22 10.72 1.58 -11.12 -0.02 10.70 16 10 O -0.59 -31.11 13.55 -148.98 -2.02 -33.13 16 11 C 0.10 4.68 8.02 83.17 0.67 5.35 16 12 N -0.63 -27.81 3.69 -858.30 -3.16 -30.98 16 13 C 0.58 25.40 8.19 87.66 0.72 26.11 16 14 O -0.60 -30.03 17.87 -3.02 -0.05 -30.08 16 15 C -0.20 -6.65 3.28 -63.41 -0.21 -6.86 16 16 C -0.10 -2.44 7.79 30.61 0.24 -2.20 16 17 C -0.10 -1.86 8.51 -21.38 -0.18 -2.04 16 18 C -0.10 -2.52 7.82 29.69 0.23 -2.28 16 19 C -0.11 -2.96 7.82 29.72 0.23 -2.73 16 20 C 0.09 3.95 7.86 83.26 0.65 4.61 16 21 H 0.28 13.04 8.31 -92.71 -0.77 12.26 16 22 H 0.39 20.79 6.32 -74.06 -0.47 20.32 16 23 H 0.05 2.47 8.14 -2.39 -0.02 2.45 16 24 H 0.11 4.25 8.10 -2.39 -0.02 4.24 16 25 H 0.07 1.90 7.97 -2.39 -0.02 1.88 16 26 H 0.08 1.97 7.97 -2.39 -0.02 1.95 16 27 H 0.19 2.13 8.14 -2.38 -0.02 2.11 16 28 H 0.08 1.90 7.97 -2.39 -0.02 1.88 16 29 H 0.08 1.97 7.84 -2.39 -0.02 1.96 16 30 H 0.07 2.13 7.48 -2.38 -0.02 2.11 16 31 H 0.07 2.00 7.97 -2.39 -0.02 1.99 16 32 H 0.09 3.72 8.10 -2.39 -0.02 3.70 16 33 H 0.06 2.66 7.79 -2.38 -0.02 2.64 16 Total: -1.00 -61.18 281.85 0.69 -60.49 By element: Atomic # 1 Polarization: 32.26 SS G_CDS: 0.65 Total: 32.91 kcal Atomic # 6 Polarization: 2.51 SS G_CDS: 3.01 Total: 5.52 kcal Atomic # 7 Polarization: -73.51 SS G_CDS: -2.93 Total: -76.43 kcal Atomic # 8 Polarization: -61.14 SS G_CDS: -2.07 Total: -63.21 kcal Atomic # 14 Polarization: 38.70 SS G_CDS: 2.03 Total: 40.73 kcal Total: -61.18 0.69 -60.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261815668.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.621 kcal (2) G-P(sol) polarization free energy of solvation -61.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.486 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds