Wall clock time and date at job start Sun Mar 29 2020 22:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34518 * 126.58092 * 2 1 4 4 O 1.34295 * 108.42175 * 180.02562 * 3 2 1 5 5 C 1.34306 * 109.47714 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.78945 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47107 * 270.02180 * 6 5 4 8 8 C 1.47488 * 110.99898 * 74.02976 * 7 6 5 9 9 C 1.53514 * 87.93091 * 138.70496 * 8 7 6 10 10 O 1.42892 * 114.17423 * 87.62542 * 9 8 7 11 11 C 1.50703 * 114.16729 * 220.32979 * 9 8 7 12 12 H 1.08004 * 119.99996 * 93.83644 * 11 9 8 13 13 C 1.37870 * 119.99807 * 273.83838 * 11 9 8 14 14 N 1.31509 * 120.00270 * 0.02562 * 13 11 9 15 15 Si 1.86810 * 119.99763 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.46902 * 90.00100 * 15 13 11 17 17 H 1.48505 * 109.46934 * 210.00023 * 15 13 11 18 18 H 1.48498 * 109.47142 * 330.00084 * 15 13 11 19 19 C 1.47481 * 111.00017 * 169.99785 * 7 6 5 20 20 C 1.34510 * 108.42113 * 0.23756 * 5 4 3 21 21 H 1.08999 * 109.47338 * 89.97209 * 1 2 3 22 22 H 1.08998 * 109.47226 * 209.97762 * 1 2 3 23 23 H 1.09007 * 109.47020 * 329.97663 * 1 2 3 24 24 H 1.08002 * 125.78628 * 0.04184 * 3 2 1 25 25 H 1.09002 * 109.47152 * 150.02267 * 6 5 4 26 26 H 1.09001 * 109.46980 * 30.02368 * 6 5 4 27 27 H 1.08997 * 113.47402 * 253.47029 * 8 7 6 28 28 H 1.09004 * 113.47408 * 23.93601 * 8 7 6 29 29 H 0.96696 * 114.00502 * 86.15038 * 10 9 8 30 30 H 0.97009 * 120.00245 * 180.02562 * 14 13 11 31 31 H 1.09003 * 113.47525 * 336.07029 * 19 7 6 32 32 H 1.09001 * 113.47256 * 106.53396 * 19 7 6 33 33 H 1.07994 * 126.58284 * 179.75727 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6617 -0.0006 5 6 3.6156 -0.6810 -0.0015 6 6 4.8580 -1.5340 -0.0029 7 7 5.2611 -1.8098 -1.3883 8 6 5.8608 -0.6154 -2.0120 9 6 6.9115 -1.5404 -2.6421 10 8 6.5233 -2.0953 -3.9004 11 6 8.3090 -0.9765 -2.6427 12 1 8.9881 -1.2154 -1.8376 13 6 8.7207 -0.1557 -3.6711 14 7 7.8938 0.1356 -4.6513 15 14 10.4534 0.5427 -3.6722 16 1 11.3626 -0.3904 -4.3847 17 1 10.4562 1.8587 -4.3603 18 1 10.9185 0.7149 -2.2725 19 6 6.5955 -2.4359 -1.4359 20 6 2.3496 -1.1353 -0.0068 21 1 -0.3634 0.0005 -1.0276 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 1.9815 2.1095 0.0006 25 1 4.6541 -2.4739 0.5101 26 1 5.6615 -1.0065 0.5111 27 1 5.2110 -0.1348 -2.7433 28 1 6.2778 0.0879 -1.2911 29 1 6.7234 -1.5292 -4.6585 30 1 8.1836 0.7128 -5.3751 31 1 7.2086 -2.2185 -0.5612 32 1 6.5684 -3.4981 -1.6790 33 1 2.0366 -2.1689 -0.0125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262111143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:55 Heat of formation + Delta-G solvation = 0.936646 kcal Electronic energy + Delta-G solvation = -16785.578893 eV Core-core repulsion = 14007.302546 eV Total energy + Delta-G solvation = -2778.276347 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.29749 -39.11692 -34.48141 -33.86756 -32.07790 -31.40905 -28.26126 -26.91814 -25.54990 -24.87684 -22.52225 -20.89507 -19.39611 -18.62156 -17.33634 -16.73146 -15.89808 -15.12757 -14.81809 -14.49343 -14.20701 -13.93156 -13.38376 -13.09201 -12.85779 -12.40044 -12.33502 -12.01681 -11.84957 -11.59021 -11.37585 -11.01867 -10.76047 -10.71615 -10.34620 -10.02095 -9.40407 -9.26242 -8.67269 -8.31500 -8.02396 -7.92256 -6.27286 -4.37328 2.00530 2.81938 3.19871 3.27085 3.29549 3.30456 4.24921 4.82957 4.89367 5.03484 5.07754 5.18950 5.43949 5.58202 5.64173 5.75003 5.87682 5.91150 5.97123 6.06037 6.25913 6.27295 6.37726 6.44638 6.66220 6.79430 7.04656 7.10963 7.33539 7.45895 7.75942 7.88927 7.99396 8.64782 9.32926 9.68038 10.78934 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.005857 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.871856 B = 4779.341541 C = 4971.192838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.186 4.186 3 C -0.052 4.052 4 O -0.172 6.172 5 C 0.015 3.985 6 C 0.093 3.907 7 N -0.467 5.467 8 C -0.018 4.018 9 C 0.248 3.752 10 O -0.570 6.570 11 C -0.535 4.535 12 H 0.067 0.933 13 C 0.071 3.929 14 N -0.898 5.898 15 Si 0.905 3.095 16 H -0.277 1.277 17 H -0.284 1.284 18 H -0.272 1.272 19 C 0.003 3.997 20 C -0.202 4.202 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.196 0.804 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.067 0.933 28 H 0.060 0.940 29 H 0.390 0.610 30 H 0.272 0.728 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.978 0.800 8.488 12.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.187 4.187 3 C -0.120 4.120 4 O -0.068 6.068 5 C -0.036 4.036 6 C -0.035 4.035 7 N -0.190 5.190 8 C -0.147 4.147 9 C 0.206 3.794 10 O -0.382 6.382 11 C -0.574 4.574 12 H 0.085 0.915 13 C -0.131 4.131 14 N -0.538 5.538 15 Si 0.732 3.268 16 H -0.203 1.203 17 H -0.209 1.209 18 H -0.197 1.197 19 C -0.125 4.125 20 C -0.222 4.222 21 H 0.083 0.917 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.213 0.787 25 H 0.115 0.885 26 H 0.072 0.928 27 H 0.086 0.914 28 H 0.079 0.921 29 H 0.246 0.754 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -9.534 0.271 8.416 12.720 hybrid contribution 1.393 1.356 0.103 1.947 sum -8.141 1.627 8.520 11.896 Atomic orbital electron populations 1.20116 0.89619 1.02038 1.01865 1.20433 0.96946 0.92943 1.08417 1.23712 0.80492 0.99436 1.08370 1.84038 1.29140 1.22492 1.71098 1.22332 0.97049 0.80340 1.03832 1.21182 0.91401 0.96163 0.94772 1.69143 1.23665 1.15532 1.10701 1.24702 0.97868 0.93621 0.98501 1.19346 0.90592 0.87544 0.81892 1.86022 1.85206 1.49834 1.17166 1.21572 0.98120 1.29207 1.08459 0.91468 1.25067 0.98063 0.95066 0.94899 1.69298 1.35568 1.37484 1.11479 0.86387 0.83645 0.78366 0.78415 1.20263 1.20938 1.19691 1.24113 0.88486 1.00570 0.99323 1.21352 0.91617 0.99572 1.09673 0.91662 0.91801 0.92059 0.78693 0.88522 0.92820 0.91435 0.92129 0.75374 0.91785 0.91513 0.90694 0.83792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.85 10.40 36.00 0.37 -0.47 16 2 C -0.19 -2.68 6.16 -104.74 -0.65 -3.33 16 3 C -0.05 -0.76 12.01 29.42 0.35 -0.41 16 4 O -0.17 -3.09 10.65 5.72 0.06 -3.03 16 5 C 0.02 0.27 6.47 -35.62 -0.23 0.04 16 6 C 0.09 1.65 5.36 -4.98 -0.03 1.62 16 7 N -0.47 -10.06 6.40 -246.05 -1.58 -11.64 16 8 C -0.02 -0.43 6.72 -7.54 -0.05 -0.48 16 9 C 0.25 6.39 1.57 -91.24 -0.14 6.25 16 10 O -0.57 -15.76 13.54 -35.23 -0.48 -16.24 16 11 C -0.54 -14.36 8.68 -34.44 -0.30 -14.65 16 12 H 0.07 1.75 7.81 -52.48 -0.41 1.34 16 13 C 0.07 1.88 5.40 -17.82 -0.10 1.79 16 14 N -0.90 -24.39 11.02 55.43 0.61 -23.78 16 15 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 19 C 0.00 0.08 7.12 -7.54 -0.05 0.02 16 20 C -0.20 -3.26 10.77 -39.70 -0.43 -3.68 16 21 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 24 H 0.20 2.07 8.06 -52.49 -0.42 1.65 16 25 H 0.10 1.46 8.14 -51.93 -0.42 1.04 16 26 H 0.05 0.93 7.56 -51.93 -0.39 0.54 16 27 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 28 H 0.06 1.45 7.66 -51.93 -0.40 1.05 16 29 H 0.39 10.96 6.34 45.56 0.29 11.25 16 30 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.07 1.34 7.72 -51.93 -0.40 0.94 16 32 H 0.07 1.60 8.14 -51.93 -0.42 1.18 16 33 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 283.50 15.07 4.27 4.27 Total: -1.00 -29.38 283.50 -7.20 -36.58 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -3.83 Total: 11.74 kcal Atomic # 6 Polarization: -12.06 SS G_CDS: -1.25 Total: -13.31 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: -0.96 Total: -35.41 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -0.42 Total: -19.27 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -29.38 -7.20 -36.58 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262111143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.517 kcal (2) G-P(sol) polarization free energy of solvation -29.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds