Wall clock time and date at job start Sun Mar 29 2020 22:12:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34518 * 126.58092 * 2 1 4 4 O 1.34295 * 108.42175 * 180.02562 * 3 2 1 5 5 C 1.34306 * 109.47714 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.78945 * 179.97438 * 5 4 3 7 7 N 1.46899 * 109.47107 * 270.02180 * 6 5 4 8 8 C 1.47488 * 110.99898 * 74.02976 * 7 6 5 9 9 C 1.53514 * 87.93091 * 138.70496 * 8 7 6 10 10 O 1.42892 * 114.17423 * 87.62542 * 9 8 7 11 11 C 1.50703 * 114.16729 * 220.32979 * 9 8 7 12 12 H 1.08004 * 119.99996 * 93.83644 * 11 9 8 13 13 C 1.37870 * 119.99807 * 273.83838 * 11 9 8 14 14 N 1.31509 * 120.00270 * 0.02562 * 13 11 9 15 15 Si 1.86810 * 119.99763 * 180.02562 * 13 11 9 16 16 H 1.48494 * 109.46902 * 90.00100 * 15 13 11 17 17 H 1.48505 * 109.46934 * 210.00023 * 15 13 11 18 18 H 1.48498 * 109.47142 * 330.00084 * 15 13 11 19 19 C 1.47481 * 111.00017 * 169.99785 * 7 6 5 20 20 C 1.34510 * 108.42113 * 0.23756 * 5 4 3 21 21 H 1.08999 * 109.47338 * 89.97209 * 1 2 3 22 22 H 1.08998 * 109.47226 * 209.97762 * 1 2 3 23 23 H 1.09007 * 109.47020 * 329.97663 * 1 2 3 24 24 H 1.08002 * 125.78628 * 0.04184 * 3 2 1 25 25 H 1.09002 * 109.47152 * 150.02267 * 6 5 4 26 26 H 1.09001 * 109.46980 * 30.02368 * 6 5 4 27 27 H 1.08997 * 113.47402 * 253.47029 * 8 7 6 28 28 H 1.09004 * 113.47408 * 23.93601 * 8 7 6 29 29 H 0.96696 * 114.00502 * 86.15038 * 10 9 8 30 30 H 0.97009 * 120.00245 * 180.02562 * 14 13 11 31 31 H 1.09003 * 113.47525 * 336.07029 * 19 7 6 32 32 H 1.09001 * 113.47256 * 106.53396 * 19 7 6 33 33 H 1.07994 * 126.58284 * 179.75727 * 20 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3086 1.0802 0.0000 4 8 3.5847 0.6617 -0.0006 5 6 3.6156 -0.6810 -0.0015 6 6 4.8580 -1.5340 -0.0029 7 7 5.2611 -1.8098 -1.3883 8 6 5.8608 -0.6154 -2.0120 9 6 6.9115 -1.5404 -2.6421 10 8 6.5233 -2.0953 -3.9004 11 6 8.3090 -0.9765 -2.6427 12 1 8.9881 -1.2154 -1.8376 13 6 8.7207 -0.1557 -3.6711 14 7 7.8938 0.1356 -4.6513 15 14 10.4534 0.5427 -3.6722 16 1 11.3626 -0.3904 -4.3847 17 1 10.4562 1.8587 -4.3603 18 1 10.9185 0.7149 -2.2725 19 6 6.5955 -2.4359 -1.4359 20 6 2.3496 -1.1353 -0.0068 21 1 -0.3634 0.0005 -1.0276 22 1 -0.3633 -0.8902 0.5135 23 1 -0.3633 0.8898 0.5142 24 1 1.9815 2.1095 0.0006 25 1 4.6541 -2.4739 0.5101 26 1 5.6615 -1.0065 0.5111 27 1 5.2110 -0.1348 -2.7433 28 1 6.2778 0.0879 -1.2911 29 1 6.7234 -1.5292 -4.6585 30 1 8.1836 0.7128 -5.3751 31 1 7.2086 -2.2185 -0.5612 32 1 6.5684 -3.4981 -1.6790 33 1 2.0366 -2.1689 -0.0125 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262111143.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:54 Heat of formation + Delta-G solvation = -21.310366 kcal Electronic energy + Delta-G solvation = -16786.543596 eV Core-core repulsion = 14007.302546 eV Total energy + Delta-G solvation = -2779.241050 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.51987 -40.91954 -36.42280 -34.98582 -34.12802 -32.86999 -29.73025 -28.20746 -27.18861 -26.68853 -24.19536 -22.15258 -20.63372 -20.52482 -19.27512 -17.97493 -17.32234 -17.11644 -16.53211 -16.06510 -15.78261 -15.63197 -14.77736 -14.10571 -14.01375 -13.95555 -13.84331 -13.53776 -13.40990 -13.26514 -12.87148 -12.70082 -12.54226 -12.26211 -12.13940 -11.98515 -11.23683 -10.68666 -10.48230 -10.15005 -9.78633 -9.28840 -8.27081 -6.45442 0.77636 1.42488 1.43752 1.54236 1.64704 2.13032 2.36513 2.93576 3.25694 3.62524 3.97281 4.02856 4.09759 4.19450 4.21567 4.36938 4.43431 4.57540 4.59409 4.84845 4.86758 4.89023 5.06079 5.09209 5.17069 5.23407 5.34166 5.38362 5.71188 5.73052 5.92773 6.17592 6.26774 6.61118 7.28096 7.52222 8.78579 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.005857 C = 0.005631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.871856 B = 4779.341541 C = 4971.192838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.194 4.194 3 C -0.057 4.057 4 O -0.198 6.198 5 C -0.020 4.020 6 C 0.095 3.905 7 N -0.473 5.473 8 C -0.003 4.003 9 C 0.219 3.781 10 O -0.583 6.583 11 C -0.558 4.558 12 H 0.071 0.929 13 C 0.025 3.975 14 N -0.922 5.922 15 Si 0.971 3.029 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.265 1.265 19 C 0.016 3.984 20 C -0.203 4.203 21 H 0.069 0.931 22 H 0.073 0.927 23 H 0.083 0.917 24 H 0.231 0.769 25 H 0.125 0.875 26 H 0.056 0.944 27 H 0.037 0.963 28 H 0.057 0.943 29 H 0.384 0.616 30 H 0.275 0.725 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 1.018 9.675 13.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.196 4.196 3 C -0.124 4.124 4 O -0.095 6.095 5 C -0.070 4.070 6 C -0.033 4.033 7 N -0.196 5.196 8 C -0.133 4.133 9 C 0.177 3.823 10 O -0.395 6.395 11 C -0.596 4.596 12 H 0.089 0.911 13 C -0.175 4.175 14 N -0.564 5.564 15 Si 0.796 3.204 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.190 1.190 19 C -0.113 4.113 20 C -0.223 4.223 21 H 0.088 0.912 22 H 0.092 0.908 23 H 0.101 0.899 24 H 0.247 0.753 25 H 0.143 0.857 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.075 0.925 29 H 0.238 0.762 30 H 0.084 0.916 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -9.994 0.471 9.621 13.881 hybrid contribution 1.429 1.296 -0.249 1.945 sum -8.565 1.767 9.372 12.819 Atomic orbital electron populations 1.20207 0.86875 1.03690 1.02611 1.20906 0.98868 0.92111 1.07689 1.24544 0.79447 1.01299 1.07140 1.84009 1.30997 1.22750 1.71766 1.22399 0.97550 0.80611 1.06457 1.21230 0.91773 0.97795 0.92456 1.69024 1.23194 1.13802 1.13532 1.24390 0.96969 0.93955 0.97950 1.19747 0.90795 0.89570 0.82141 1.86002 1.85462 1.50160 1.17863 1.21866 0.98886 1.29803 1.09009 0.91104 1.25876 1.01871 0.95257 0.94471 1.69385 1.37229 1.37811 1.11941 0.85353 0.78879 0.77571 0.78619 1.19802 1.20648 1.18974 1.24020 0.88893 1.00211 0.98138 1.21706 0.91503 1.00819 1.08248 0.91241 0.90803 0.89861 0.75258 0.85707 0.92596 0.94399 0.92528 0.76166 0.91558 0.89584 0.90137 0.82533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.42 10.40 71.24 0.74 -0.68 16 2 C -0.19 -5.23 6.16 -19.94 -0.12 -5.35 16 3 C -0.06 -1.59 12.01 66.97 0.80 -0.79 16 4 O -0.20 -7.05 10.65 -2.44 -0.03 -7.07 16 5 C -0.02 -0.71 6.47 24.83 0.16 -0.55 16 6 C 0.10 3.27 5.36 85.56 0.46 3.73 16 7 N -0.47 -20.19 6.40 -932.76 -5.97 -26.16 16 8 C 0.00 -0.14 6.72 83.58 0.56 0.42 16 9 C 0.22 11.39 1.57 -11.19 -0.02 11.37 16 10 O -0.58 -32.98 13.54 -148.98 -2.02 -35.00 16 11 C -0.56 -30.00 8.68 25.60 0.22 -29.78 16 12 H 0.07 3.65 7.81 -2.91 -0.02 3.63 16 13 C 0.02 1.31 5.40 84.65 0.46 1.77 16 14 N -0.92 -50.85 11.02 21.44 0.24 -50.61 16 15 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 16 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 17 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 C 0.02 0.67 7.12 83.58 0.60 1.27 16 20 C -0.20 -6.26 10.77 22.19 0.24 -6.02 16 21 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 23 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 24 H 0.23 4.29 8.06 -2.91 -0.02 4.27 16 25 H 0.13 3.52 8.14 -2.39 -0.02 3.50 16 26 H 0.06 1.89 7.56 -2.39 -0.02 1.87 16 27 H 0.04 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.06 2.77 7.66 -2.38 -0.02 2.75 16 29 H 0.38 22.26 6.34 -74.06 -0.47 21.79 16 30 H 0.27 14.23 8.31 -92.70 -0.77 13.46 16 31 H 0.09 3.33 7.72 -2.39 -0.02 3.31 16 32 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 33 H 0.16 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -63.15 283.50 -1.01 -64.16 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.64 Total: 35.57 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 4.10 Total: -24.59 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -5.74 Total: -76.77 kcal Atomic # 8 Polarization: -40.03 SS G_CDS: -2.04 Total: -42.07 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Total: -63.15 -1.01 -64.16 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262111143.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.849 kcal (2) G-P(sol) polarization free energy of solvation -63.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds