Wall clock time and date at job start Sun Mar 29 2020 22:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35491 * 125.50929 * 2 1 4 4 C 1.39795 * 107.84403 * 180.22811 * 3 2 1 5 5 C 1.50697 * 126.51541 * 179.77133 * 4 3 2 6 6 C 1.37998 * 106.96627 * 359.63739 * 4 3 2 7 7 C 1.46496 * 126.26065 * 180.13454 * 6 4 3 8 8 O 1.21615 * 120.00062 * 0.24353 * 7 6 4 9 9 O 1.34892 * 119.99516 * 180.24446 * 7 6 4 10 10 C 1.45203 * 116.99473 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99939 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00245 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00440 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99806 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47098 * 90.00294 * 16 14 12 18 18 H 1.48498 * 109.46981 * 210.00648 * 16 14 12 19 19 H 1.48503 * 109.46888 * 330.00284 * 16 14 12 20 20 N 1.34954 * 125.50592 * 180.02562 * 2 1 3 21 21 H 0.97002 * 125.64253 * 359.97438 * 20 2 1 22 22 H 1.08998 * 109.47155 * 89.99806 * 1 2 3 23 23 H 1.09000 * 109.47217 * 209.99790 * 1 2 3 24 24 H 1.08997 * 109.46987 * 330.00198 * 1 2 3 25 25 H 1.08002 * 126.07453 * 359.95957 * 3 2 1 26 26 H 1.09006 * 109.46869 * 90.02645 * 5 4 3 27 27 H 1.09006 * 109.47194 * 210.02310 * 5 4 3 28 28 H 1.08998 * 109.47240 * 330.02802 * 5 4 3 29 29 H 1.09003 * 109.47280 * 299.99599 * 10 9 7 30 30 H 1.09000 * 109.47511 * 59.99996 * 10 9 7 31 31 H 1.09003 * 109.47205 * 299.99584 * 11 10 9 32 32 H 1.09000 * 109.47102 * 59.99655 * 11 10 9 33 33 H 0.96999 * 120.00231 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.1029 0.0000 4 6 3.6260 0.6787 -0.0053 5 6 4.8479 1.5606 -0.0121 6 6 3.6092 -0.7011 -0.0001 7 6 4.7798 -1.5819 -0.0001 8 8 5.8989 -1.1060 -0.0005 9 8 4.6163 -2.9209 0.0004 10 6 5.8206 -3.7320 0.0010 11 6 5.4378 -5.2134 0.0008 12 6 6.6878 -6.0552 0.0008 13 1 7.6582 -5.5811 0.0004 14 6 6.5926 -7.4307 0.0001 15 7 7.6834 -8.1654 0.0006 16 14 4.9142 -8.2508 0.0000 17 1 4.4692 -8.4674 -1.4000 18 1 5.0019 -9.5577 0.6995 19 1 3.9373 -7.3789 0.7006 20 7 2.2908 -1.0986 -0.0005 21 1 1.9774 -2.0166 -0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9528 2.1276 -0.0006 26 1 5.1474 1.7744 1.0140 27 1 5.6610 1.0510 -0.5291 28 1 4.6193 2.4944 -0.5258 29 1 6.4092 -3.5092 -0.8890 30 1 6.4089 -3.5085 0.8910 31 1 4.8491 -5.4366 0.8906 32 1 4.8498 -5.4366 -0.8894 33 1 7.6164 -9.1331 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320711615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:20 Heat of formation + Delta-G solvation = -63.750907 kcal Electronic energy + Delta-G solvation = -16119.836592 eV Core-core repulsion = 13338.755182 eV Total energy + Delta-G solvation = -2781.081410 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.52309 -39.49433 -36.18542 -33.35774 -32.86342 -31.79042 -30.72149 -27.87770 -26.92306 -24.98925 -21.96557 -20.69071 -20.54214 -19.19953 -18.28320 -16.97822 -16.12197 -16.04667 -15.13156 -14.89069 -14.24758 -13.65115 -13.52592 -13.32650 -13.06738 -13.04216 -12.87022 -12.47473 -12.37899 -12.15726 -11.60596 -11.53400 -11.33311 -10.73532 -10.58395 -10.00339 -9.94643 -9.73991 -9.38334 -8.86659 -8.65578 -8.16084 -6.15767 -4.17099 1.31221 2.54058 2.91476 3.21866 3.24238 3.27937 3.31751 3.34955 4.35068 4.61084 4.87486 5.05222 5.15850 5.17507 5.23889 5.33229 5.57663 5.64357 5.82258 5.83786 5.93730 5.95245 6.09175 6.30085 6.41897 6.66783 6.70283 6.90549 7.14440 7.17494 7.32366 7.59181 8.12682 8.36878 8.86113 9.43535 10.96850 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.005079 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.937041 B = 5511.247666 C = 6292.128964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.057 3.943 3 C -0.214 4.214 4 C -0.067 4.067 5 C -0.092 4.092 6 C -0.041 4.041 7 C 0.529 3.471 8 O -0.502 6.502 9 O -0.368 6.368 10 C 0.085 3.915 11 C -0.009 4.009 12 C -0.528 4.528 13 H 0.076 0.924 14 C 0.073 3.927 15 N -0.896 5.896 16 Si 0.882 3.118 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.265 1.265 20 N -0.522 5.522 21 H 0.424 0.576 22 H 0.076 0.924 23 H 0.068 0.932 24 H 0.084 0.916 25 H 0.144 0.856 26 H 0.068 0.932 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.027 0.973 32 H 0.023 0.977 33 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.062 17.029 -0.014 22.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.062 4.062 3 C -0.239 4.239 4 C -0.075 4.075 5 C -0.149 4.149 6 C -0.152 4.152 7 C 0.374 3.626 8 O -0.391 6.391 9 O -0.285 6.285 10 C 0.013 3.987 11 C -0.046 4.046 12 C -0.566 4.566 13 H 0.094 0.906 14 C -0.130 4.130 15 N -0.534 5.534 16 Si 0.708 3.292 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.189 1.189 20 N -0.118 5.118 21 H 0.262 0.738 22 H 0.095 0.905 23 H 0.086 0.914 24 H 0.103 0.897 25 H 0.162 0.838 26 H 0.087 0.913 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.041 0.959 33 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.625 16.739 -0.011 22.228 hybrid contribution -0.792 -1.095 -0.009 1.352 sum -15.417 15.644 -0.020 21.964 Atomic orbital electron populations 1.20431 0.87571 1.03678 1.03116 1.20462 0.93815 0.86364 1.05607 1.20530 0.91534 0.97979 1.13809 1.19956 0.95773 0.90521 1.01280 1.20375 0.94560 0.97559 1.02400 1.19313 0.82088 0.92687 1.21093 1.19754 0.87478 0.81719 0.73667 1.90844 1.24896 1.76603 1.46765 1.86540 1.41142 1.17257 1.83598 1.23396 0.82739 0.90601 1.01992 1.19628 0.98695 0.88565 0.97739 1.20839 0.92374 0.90945 1.52420 0.90555 1.24932 0.96772 0.97124 0.94130 1.69892 1.27798 1.05689 1.50025 0.86750 0.84763 0.78960 0.78694 1.20064 1.21108 1.18919 1.41798 1.05245 1.09046 1.55724 0.73794 0.90507 0.91352 0.89732 0.83849 0.91329 0.90094 0.91823 0.91539 0.91506 0.95481 0.95912 0.92394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.41 36.01 0.37 -0.20 16 2 C 0.06 0.59 7.11 -82.20 -0.58 0.00 16 3 C -0.21 -2.39 10.66 -39.98 -0.43 -2.82 16 4 C -0.07 -0.92 6.22 -104.13 -0.65 -1.57 16 5 C -0.09 -1.13 9.83 36.00 0.35 -0.78 16 6 C -0.04 -0.63 7.10 -81.99 -0.58 -1.21 16 7 C 0.53 9.73 7.93 34.06 0.27 10.00 16 8 O -0.50 -10.16 14.62 -19.35 -0.28 -10.45 16 9 O -0.37 -7.17 10.23 -41.02 -0.42 -7.59 16 10 C 0.09 1.85 5.42 37.16 0.20 2.05 16 11 C -0.01 -0.21 4.42 -27.88 -0.12 -0.34 16 12 C -0.53 -15.04 9.66 -34.44 -0.33 -15.38 16 13 H 0.08 2.33 7.99 -52.48 -0.42 1.91 16 14 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 15 N -0.90 -27.33 13.96 55.43 0.77 -26.56 16 16 Si 0.88 21.33 27.47 -169.99 -4.67 16.66 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 19 H -0.26 -6.15 6.54 56.52 0.37 -5.78 16 20 N -0.52 -6.39 6.07 -5.82 -0.04 -6.43 16 21 H 0.42 4.49 8.96 -40.82 -0.37 4.12 16 22 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 23 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 25 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 26 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.08 1.15 6.51 -51.93 -0.34 0.81 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 30 H 0.07 1.46 8.14 -51.93 -0.42 1.04 16 31 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 32 H 0.02 0.54 7.57 -51.93 -0.39 0.14 16 33 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 288.90 15.07 4.35 4.35 Total: -1.00 -32.36 288.90 -6.31 -38.67 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.44 Total: -0.43 kcal Atomic # 6 Polarization: -6.65 SS G_CDS: -1.59 Total: -8.24 kcal Atomic # 7 Polarization: -33.72 SS G_CDS: 0.74 Total: -32.99 kcal Atomic # 8 Polarization: -17.33 SS G_CDS: -0.70 Total: -18.04 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.67 Total: 16.66 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -32.36 -6.31 -38.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320711615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.080 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds