Wall clock time and date at job start Sun Mar 29 2020 22:11:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35491 * 125.50929 * 2 1 4 4 C 1.39795 * 107.84403 * 180.22811 * 3 2 1 5 5 C 1.50697 * 126.51541 * 179.77133 * 4 3 2 6 6 C 1.37998 * 106.96627 * 359.63739 * 4 3 2 7 7 C 1.46496 * 126.26065 * 180.13454 * 6 4 3 8 8 O 1.21615 * 120.00062 * 0.24353 * 7 6 4 9 9 O 1.34892 * 119.99516 * 180.24446 * 7 6 4 10 10 C 1.45203 * 116.99473 * 180.02562 * 9 7 6 11 11 C 1.53005 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.50699 * 109.47131 * 179.97438 * 11 10 9 13 13 H 1.08004 * 119.99939 * 359.97438 * 12 11 10 14 14 C 1.37876 * 120.00245 * 180.02562 * 12 11 10 15 15 N 1.31515 * 120.00440 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99806 * 359.97438 * 14 12 11 17 17 H 1.48495 * 109.47098 * 90.00294 * 16 14 12 18 18 H 1.48498 * 109.46981 * 210.00648 * 16 14 12 19 19 H 1.48503 * 109.46888 * 330.00284 * 16 14 12 20 20 N 1.34954 * 125.50592 * 180.02562 * 2 1 3 21 21 H 0.97002 * 125.64253 * 359.97438 * 20 2 1 22 22 H 1.08998 * 109.47155 * 89.99806 * 1 2 3 23 23 H 1.09000 * 109.47217 * 209.99790 * 1 2 3 24 24 H 1.08997 * 109.46987 * 330.00198 * 1 2 3 25 25 H 1.08002 * 126.07453 * 359.95957 * 3 2 1 26 26 H 1.09006 * 109.46869 * 90.02645 * 5 4 3 27 27 H 1.09006 * 109.47194 * 210.02310 * 5 4 3 28 28 H 1.08998 * 109.47240 * 330.02802 * 5 4 3 29 29 H 1.09003 * 109.47280 * 299.99599 * 10 9 7 30 30 H 1.09000 * 109.47511 * 59.99996 * 10 9 7 31 31 H 1.09003 * 109.47205 * 299.99584 * 11 10 9 32 32 H 1.09000 * 109.47102 * 59.99655 * 11 10 9 33 33 H 0.96999 * 120.00231 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2940 1.1029 0.0000 4 6 3.6260 0.6787 -0.0053 5 6 4.8479 1.5606 -0.0121 6 6 3.6092 -0.7011 -0.0001 7 6 4.7798 -1.5819 -0.0001 8 8 5.8989 -1.1060 -0.0005 9 8 4.6163 -2.9209 0.0004 10 6 5.8206 -3.7320 0.0010 11 6 5.4378 -5.2134 0.0008 12 6 6.6878 -6.0552 0.0008 13 1 7.6582 -5.5811 0.0004 14 6 6.5926 -7.4307 0.0001 15 7 7.6834 -8.1654 0.0006 16 14 4.9142 -8.2508 0.0000 17 1 4.4692 -8.4674 -1.4000 18 1 5.0019 -9.5577 0.6995 19 1 3.9373 -7.3789 0.7006 20 7 2.2908 -1.0986 -0.0005 21 1 1.9774 -2.0166 -0.0005 22 1 -0.3633 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5138 25 1 1.9528 2.1276 -0.0006 26 1 5.1474 1.7744 1.0140 27 1 5.6610 1.0510 -0.5291 28 1 4.6193 2.4944 -0.5258 29 1 6.4092 -3.5092 -0.8890 30 1 6.4089 -3.5085 0.8910 31 1 4.8491 -5.4366 0.8906 32 1 4.8498 -5.4366 -0.8894 33 1 7.6164 -9.1331 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320711615.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:11:20 Heat of formation + Delta-G solvation = -84.257047 kcal Electronic energy + Delta-G solvation = -16120.725805 eV Core-core repulsion = 13338.755182 eV Total energy + Delta-G solvation = -2781.970623 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.52821 -40.93035 -37.74007 -35.43773 -33.81558 -33.02418 -32.33158 -28.71888 -28.21520 -26.72141 -23.36472 -22.51940 -21.43246 -20.31094 -19.61912 -18.90131 -17.64985 -17.63517 -16.44685 -16.08192 -15.92809 -15.00527 -14.97227 -14.53193 -14.31087 -14.00052 -13.94052 -13.62149 -13.36999 -13.20513 -13.09645 -12.97505 -12.58021 -12.52512 -12.40133 -11.85199 -11.59866 -11.51428 -11.46852 -10.84495 -9.78958 -9.13790 -8.37262 -6.46115 0.15123 1.35051 1.37165 1.49396 1.59398 1.63581 2.03309 2.16616 2.31474 2.97253 3.76921 3.90748 4.11276 4.11721 4.15211 4.21910 4.56133 4.62767 4.76056 4.83614 4.84852 4.87509 4.96502 5.13764 5.20383 5.22820 5.32954 5.47205 5.50823 5.76410 5.91655 6.12407 6.46867 6.59860 6.67424 7.18970 8.78972 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.034477 B = 0.005079 C = 0.004449 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.937041 B = 5511.247666 C = 6292.128964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.082 3.918 3 C -0.224 4.224 4 C -0.068 4.068 5 C -0.092 4.092 6 C -0.087 4.087 7 C 0.525 3.475 8 O -0.533 6.533 9 O -0.365 6.365 10 C 0.096 3.904 11 C -0.001 4.001 12 C -0.545 4.545 13 H 0.035 0.965 14 C 0.013 3.987 15 N -0.944 5.944 16 Si 0.956 3.044 17 H -0.262 1.262 18 H -0.279 1.279 19 H -0.245 1.245 20 N -0.522 5.522 21 H 0.429 0.571 22 H 0.092 0.908 23 H 0.079 0.921 24 H 0.105 0.895 25 H 0.174 0.826 26 H 0.072 0.928 27 H 0.054 0.946 28 H 0.091 0.909 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.035 0.965 33 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.023 18.146 -0.013 26.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.247 4.247 4 C -0.076 4.076 5 C -0.149 4.149 6 C -0.196 4.196 7 C 0.373 3.627 8 O -0.424 6.424 9 O -0.282 6.282 10 C 0.023 3.977 11 C -0.038 4.038 12 C -0.583 4.583 13 H 0.053 0.947 14 C -0.186 4.186 15 N -0.583 5.583 16 Si 0.778 3.222 17 H -0.187 1.187 18 H -0.205 1.205 19 H -0.168 1.168 20 N -0.119 5.119 21 H 0.269 0.731 22 H 0.111 0.889 23 H 0.098 0.902 24 H 0.124 0.876 25 H 0.191 0.809 26 H 0.090 0.910 27 H 0.073 0.927 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.591 17.874 -0.011 25.790 hybrid contribution 0.426 -1.297 -0.013 1.365 sum -18.165 16.577 -0.024 24.592 Atomic orbital electron populations 1.20638 0.84170 1.05329 1.04607 1.21248 0.95676 0.85347 1.01608 1.20923 0.90190 0.99767 1.13863 1.20350 0.97403 0.90060 0.99838 1.20400 0.93550 0.98342 1.02645 1.19058 0.82332 0.92708 1.25549 1.20316 0.88451 0.81148 0.72818 1.90822 1.26323 1.76686 1.48598 1.86512 1.39478 1.18151 1.84107 1.22969 0.83464 0.90074 1.01204 1.19454 0.96741 0.89210 0.98432 1.21105 0.92553 0.91980 1.52668 0.94692 1.25961 1.01564 0.97718 0.93315 1.70040 1.30734 1.06324 1.51197 0.85583 0.79130 0.77946 0.79561 1.18706 1.20464 1.16800 1.41864 1.04327 1.10030 1.55654 0.73101 0.88907 0.90206 0.87620 0.80897 0.90951 0.92665 0.89024 0.92424 0.92428 0.94619 0.94717 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 10.41 71.24 0.74 0.03 16 2 C 0.08 1.40 7.11 41.44 0.29 1.70 16 3 C -0.22 -4.27 10.66 22.01 0.23 -4.04 16 4 C -0.07 -1.77 6.22 -19.55 -0.12 -1.89 16 5 C -0.09 -2.22 9.83 71.24 0.70 -1.52 16 6 C -0.09 -2.62 7.10 40.32 0.29 -2.33 16 7 C 0.52 19.74 7.93 69.97 0.55 20.30 16 8 O -0.53 -22.55 14.62 19.46 0.28 -22.27 16 9 O -0.37 -14.34 10.23 -58.06 -0.59 -14.93 16 10 C 0.10 4.29 5.42 71.98 0.39 4.68 16 11 C 0.00 -0.05 4.42 29.85 0.13 0.09 16 12 C -0.55 -31.95 9.66 25.60 0.25 -31.70 16 13 H 0.03 2.26 7.99 -2.91 -0.02 2.23 16 14 C 0.01 0.73 5.47 84.65 0.46 1.20 16 15 N -0.94 -58.92 13.96 21.45 0.30 -58.62 16 16 Si 0.96 43.31 27.47 68.60 1.88 45.20 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 19 H -0.24 -10.23 6.54 99.48 0.65 -9.58 16 20 N -0.52 -11.74 6.07 -172.32 -1.05 -12.78 16 21 H 0.43 8.25 8.96 -92.71 -0.83 7.42 16 22 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.11 0.47 8.14 -2.39 -0.02 0.45 16 25 H 0.17 2.19 8.06 -2.91 -0.02 2.17 16 26 H 0.07 1.66 8.14 -2.38 -0.02 1.64 16 27 H 0.05 1.62 6.51 -2.38 -0.02 1.60 16 28 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 30 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 31 H 0.04 1.66 7.20 -2.39 -0.02 1.64 16 32 H 0.03 1.59 7.57 -2.39 -0.02 1.57 16 33 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -72.23 288.90 4.98 -67.25 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 0.23 Total: 9.65 kcal Atomic # 6 Polarization: -17.42 SS G_CDS: 3.92 Total: -13.50 kcal Atomic # 7 Polarization: -70.66 SS G_CDS: -0.75 Total: -71.41 kcal Atomic # 8 Polarization: -36.89 SS G_CDS: -0.31 Total: -37.20 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 1.88 Total: 45.20 kcal Total: -72.23 4.98 -67.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320711615.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.003 kcal (2) G-P(sol) polarization free energy of solvation -72.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds