Wall clock time and date at job start Sun Mar 29 2020 21:35:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 109.46992 * 2 1 4 4 S 1.81393 * 109.46915 * 240.00142 * 2 1 3 5 5 C 1.81399 * 103.00232 * 64.99960 * 4 2 1 6 6 C 1.53006 * 109.47004 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46866 * 179.97438 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47574 * 89.99780 * 11 9 7 13 13 H 1.48500 * 109.47346 * 209.99892 * 11 9 7 14 14 H 1.48499 * 109.47067 * 329.99541 * 11 9 7 15 15 C 1.50697 * 109.46988 * 120.00026 * 2 1 3 16 16 C 1.38677 * 120.41804 * 239.72239 * 15 2 1 17 17 C 1.38622 * 118.42181 * 179.78594 * 16 15 2 18 18 C 1.38234 * 119.16110 * 0.50931 * 17 16 15 19 19 N 1.31851 * 120.76098 * 359.73242 * 18 17 16 20 20 C 1.31883 * 121.72810 * 359.97438 * 19 18 17 21 21 H 1.08999 * 109.47395 * 60.00463 * 1 2 3 22 22 H 1.08998 * 109.46992 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47177 * 299.99780 * 1 2 3 24 24 H 1.09000 * 109.47234 * 59.99874 * 5 4 2 25 25 H 1.09001 * 109.47232 * 299.99385 * 5 4 2 26 26 H 1.08993 * 109.46955 * 300.00150 * 6 5 4 27 27 H 1.09000 * 109.47050 * 59.99979 * 6 5 4 28 28 H 0.96992 * 120.00032 * 180.02562 * 10 9 7 29 29 H 1.07996 * 120.78747 * 0.02562 * 16 15 2 30 30 H 1.07997 * 120.42478 * 180.21470 * 17 16 15 31 31 H 1.07996 * 119.61569 * 179.74571 * 18 17 16 32 32 H 1.08000 * 119.61701 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 16 2.1346 -0.8551 -1.4811 5 6 1.5664 0.2153 -2.8309 6 6 2.0050 -0.3778 -4.1713 7 6 1.5324 0.5111 -5.2927 8 1 0.9746 1.4091 -5.0714 9 6 1.8111 0.1776 -6.6011 10 7 2.4899 -0.9162 -6.8706 11 14 1.2259 1.2798 -7.9910 12 1 2.2671 2.2958 -8.2891 13 1 0.9750 0.4581 -9.2023 14 1 -0.0298 1.9617 -7.5868 15 6 2.0323 -0.7104 1.2304 16 6 2.8348 -0.0465 2.1461 17 6 3.2699 -0.7384 3.2657 18 6 2.9009 -2.0609 3.4258 19 7 2.1405 -2.6618 2.5318 20 6 1.7036 -2.0331 1.4579 21 1 -0.3634 0.5137 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 2.0001 1.2085 -2.7142 25 1 0.4791 0.2881 -2.8038 26 1 3.0922 -0.4503 -4.1982 27 1 1.5716 -1.3711 -4.2883 28 1 2.6863 -1.1507 -7.7910 29 1 3.1110 0.9862 1.9925 30 1 3.8933 -0.2519 4.0012 31 1 3.2391 -2.6082 4.2932 32 1 1.0821 -2.5584 0.7478 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324105486.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:35:41 Heat of formation + Delta-G solvation = 12.200305 kcal Electronic energy + Delta-G solvation = -13717.214482 eV Core-core repulsion = 11382.179435 eV Total energy + Delta-G solvation = -2335.035047 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 237.088 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -40.24865 -34.81582 -33.70873 -32.21732 -30.94656 -29.67272 -25.25878 -24.58503 -23.59270 -21.83762 -20.87783 -17.22595 -16.64722 -16.53087 -15.90217 -14.85166 -14.52246 -14.15970 -14.10263 -13.88692 -13.37941 -13.15593 -12.96243 -12.43851 -12.13856 -11.70825 -11.52400 -11.16154 -11.02966 -10.60985 -10.20643 -9.96453 -9.71165 -9.57959 -9.46239 -9.07661 -8.88521 -8.43502 -7.20433 -6.07301 -4.12180 0.93013 1.17380 2.21700 3.15749 3.27994 3.34647 3.37451 3.77861 4.29675 4.40503 4.62620 4.69492 4.85803 4.92171 5.11721 5.21172 5.28242 5.44068 5.59528 5.73910 5.78458 5.94618 5.99316 6.07260 6.15799 6.24103 6.60410 6.71463 7.54882 7.63386 7.88728 7.90282 8.25688 8.92823 9.51873 11.03480 Molecular weight = 237.09amu Principal moments of inertia in cm(-1) A = 0.060757 B = 0.004331 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 460.738437 B = 6462.850625 C = 6594.679441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.022 4.022 3 H 0.090 0.910 4 S -0.271 6.271 5 C -0.060 4.060 6 C 0.037 3.963 7 C -0.522 4.522 8 H 0.057 0.943 9 C 0.060 3.940 10 N -0.890 5.890 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.273 1.273 15 C -0.107 4.107 16 C -0.066 4.066 17 C -0.174 4.174 18 C 0.091 3.909 19 N -0.484 5.484 20 C 0.118 3.882 21 H 0.067 0.933 22 H 0.069 0.931 23 H 0.059 0.941 24 H 0.067 0.933 25 H 0.070 0.930 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.263 0.737 29 H 0.134 0.866 30 H 0.134 0.866 31 H 0.154 0.846 32 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.154 2.157 18.527 18.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.151 4.151 3 H 0.109 0.891 4 S -0.041 6.041 5 C -0.208 4.208 6 C -0.001 4.001 7 C -0.562 4.562 8 H 0.075 0.925 9 C -0.142 4.142 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.198 1.198 15 C -0.110 4.110 16 C -0.094 4.094 17 C -0.194 4.194 18 C -0.066 4.066 19 N -0.192 5.192 20 C -0.040 4.040 21 H 0.086 0.914 22 H 0.088 0.912 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.044 0.956 27 H 0.045 0.955 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.152 0.848 31 H 0.171 0.829 32 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.735 0.223 18.427 18.443 hybrid contribution -0.593 2.659 -0.914 2.873 sum -1.328 2.882 17.513 17.798 Atomic orbital electron populations 1.22097 0.92463 1.03376 1.02294 1.21914 0.98757 1.00997 0.93438 0.89120 1.87138 1.76164 1.40229 1.00520 1.23738 1.02224 0.98886 0.95946 1.18905 0.97534 0.96707 0.86983 1.21088 1.35903 1.08540 0.90645 0.92470 1.25012 0.95063 0.95275 0.98877 1.69973 1.39247 1.24010 1.19644 0.86523 0.79117 0.80395 0.81552 1.20562 1.21080 1.19811 1.20384 0.99007 0.95950 0.95688 1.21488 0.94552 1.00314 0.93046 1.22095 1.02065 0.96315 0.98909 1.22776 0.94015 0.92315 0.97523 1.67742 1.10269 1.38529 1.02644 1.22729 0.96336 0.91082 0.93828 0.91450 0.91186 0.92238 0.91446 0.91180 0.95580 0.95491 0.92755 0.84844 0.84813 0.82907 0.82293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 8.92 37.16 0.33 -1.41 16 2 C -0.02 -0.30 3.03 -27.88 -0.08 -0.38 16 3 H 0.09 1.16 7.93 -51.92 -0.41 0.75 16 4 S -0.27 -4.92 20.78 -107.50 -2.23 -7.15 16 5 C -0.06 -1.23 5.58 37.16 0.21 -1.03 16 6 C 0.04 0.97 4.98 -27.88 -0.14 0.83 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 10 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 11 Si 0.90 21.29 29.54 -169.99 -5.02 16.27 16 12 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 14 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 15 C -0.11 -1.38 4.79 -104.48 -0.50 -1.88 16 16 C -0.07 -0.73 9.81 -39.28 -0.39 -1.11 16 17 C -0.17 -1.68 10.11 -39.44 -0.40 -2.08 16 18 C 0.09 0.98 11.18 -17.54 -0.20 0.79 16 19 N -0.48 -6.57 10.36 -13.25 -0.14 -6.70 16 20 C 0.12 1.62 9.97 -17.55 -0.17 1.44 16 21 H 0.07 0.85 6.92 -51.93 -0.36 0.49 16 22 H 0.07 0.84 7.41 -51.93 -0.38 0.46 16 23 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 25 H 0.07 1.36 7.14 -51.92 -0.37 0.99 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.13 1.19 8.00 -52.49 -0.42 0.77 16 30 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 31 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 32 H 0.16 2.14 7.59 -52.49 -0.40 1.74 16 LS Contribution 287.94 15.07 4.34 4.34 Total: -1.00 -30.75 287.94 -8.49 -39.24 By element: Atomic # 1 Polarization: 2.35 SS G_CDS: -4.42 Total: -2.07 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -1.75 Total: -18.05 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.60 Total: -32.58 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -4.92 SS G_CDS: -2.23 Total: -7.15 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -30.75 -8.49 -39.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324105486.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.441 kcal (2) G-P(sol) polarization free energy of solvation -30.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds