Wall clock time and date at job start Sun Mar 29 2020 22:21:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47354 * 2 1 4 4 C 1.47201 * 109.47107 * 119.99862 * 2 1 3 5 5 C 2.64603 * 109.47113 * 120.00069 * 2 1 3 6 6 C 4.07799 * 109.47180 * 120.00039 * 2 1 3 7 7 O 1.21612 * 120.00300 * 239.38540 * 6 5 4 8 8 N 1.34776 * 120.00193 * 59.38773 * 6 5 4 9 9 C 1.47579 * 134.49442 * 179.97438 * 8 6 5 10 10 C 1.53953 * 86.11613 * 155.35662 * 9 8 6 11 11 O 1.42891 * 113.74249 * 269.15295 * 10 9 8 12 12 C 1.50704 * 113.73748 * 137.95211 * 10 9 8 13 13 H 1.07998 * 120.00120 * 3.90458 * 12 10 9 14 14 C 1.37883 * 119.99782 * 183.91187 * 12 10 9 15 15 N 1.31513 * 120.00053 * 185.23007 * 14 12 10 16 16 Si 1.86796 * 119.99938 * 5.22387 * 14 12 10 17 17 H 1.48495 * 109.47550 * 270.00395 * 16 14 12 18 18 H 1.48511 * 109.47116 * 30.00543 * 16 14 12 19 19 H 1.48499 * 109.47060 * 149.99973 * 16 14 12 20 20 C 1.47582 * 134.49131 * 359.97438 * 8 6 5 21 21 H 1.09002 * 109.47123 * 299.99780 * 1 2 3 22 22 H 1.09002 * 109.47177 * 59.99850 * 1 2 3 23 23 H 1.08999 * 109.47383 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47042 * 239.99710 * 2 1 3 25 25 H 1.08993 * 109.47224 * 179.97438 * 3 2 1 26 26 H 1.09002 * 109.47101 * 300.00196 * 3 2 1 27 27 H 1.09002 * 109.46827 * 60.00038 * 3 2 1 28 28 H 1.08998 * 113.77112 * 41.06103 * 9 8 6 29 29 H 1.09000 * 113.87384 * 269.66796 * 9 8 6 30 30 H 0.96707 * 113.99791 * 172.50486 * 11 10 9 31 31 H 0.97008 * 119.99681 * 354.94910 * 15 14 12 32 32 H 1.09003 * 113.77322 * 90.33860 * 20 8 6 33 33 H 1.09009 * 113.76717 * 318.93870 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0206 -0.6939 1.2019 5 6 2.4120 -1.2474 2.1605 6 6 2.8893 -1.9224 3.3296 7 8 3.1027 -1.2952 4.3495 8 7 3.1023 -3.2529 3.2999 9 6 3.5753 -4.2468 4.2829 10 6 2.8078 -5.2857 3.4452 11 8 1.4569 -5.4812 3.8681 12 6 3.5554 -6.5796 3.2499 13 1 4.5086 -6.7309 3.7345 14 6 3.0224 -7.5702 2.4525 15 7 3.6226 -8.7369 2.3636 16 14 1.4477 -7.2548 1.4985 17 1 0.2794 -7.6402 2.3301 18 1 1.3570 -5.8127 1.1555 19 1 1.4548 -8.0607 0.2512 20 6 2.9560 -4.3010 2.2713 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 3.1300 1.4425 0.0005 26 1 1.6767 1.9563 -0.8900 27 1 1.6767 1.9563 0.8900 28 1 3.1688 -4.1027 5.2839 29 1 4.6557 -4.3912 4.2793 30 1 0.9377 -6.0447 3.2781 31 1 4.4777 -8.8769 2.7998 32 1 3.8546 -4.4601 1.6752 33 1 2.0549 -4.2000 1.6662 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331170257.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:21:20 Heat of formation + Delta-G solvation = 1.534241 kcal Electronic energy + Delta-G solvation = -16416.936630 eV Core-core repulsion = 13638.686197 eV Total energy + Delta-G solvation = -2778.250434 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.80336 -37.68172 -36.43728 -34.45018 -32.65554 -31.92354 -28.90341 -27.42673 -25.92890 -25.17726 -23.29696 -21.07718 -19.47206 -18.10787 -17.45170 -16.35757 -15.99816 -15.42146 -15.20914 -14.77588 -14.19867 -13.66264 -13.50012 -13.03003 -12.85346 -12.48594 -12.30023 -12.20419 -12.04226 -11.66135 -11.59827 -11.42165 -10.88162 -10.48760 -10.28925 -10.20466 -10.00157 -9.72804 -9.52248 -9.05972 -8.62034 -8.13246 -6.75211 -4.51545 1.82792 2.44783 3.07459 3.10579 3.27107 3.29155 3.81954 4.13747 4.16544 4.68960 4.75906 4.90749 4.92827 5.09700 5.31562 5.36769 5.53079 5.55735 5.62882 5.73949 5.94451 5.97219 5.98615 6.01964 6.21202 6.27066 6.39363 6.55598 7.39084 7.44252 8.02932 8.11699 8.42421 8.45704 8.56147 9.23926 10.60994 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.026787 B = 0.006735 C = 0.005826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1045.030427 B = 4156.240422 C = 4804.706085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.012 3.988 3 C -0.146 4.146 4 C -0.099 4.099 5 C -0.199 4.199 6 C 0.643 3.357 7 O -0.545 6.545 8 N -0.623 5.623 9 C 0.130 3.870 10 C 0.197 3.803 11 O -0.554 6.554 12 C -0.610 4.610 13 H 0.073 0.927 14 C 0.036 3.964 15 N -0.890 5.890 16 Si 1.030 2.970 17 H -0.275 1.275 18 H -0.268 1.268 19 H -0.279 1.279 20 C 0.061 3.939 21 H 0.061 0.939 22 H 0.068 0.932 23 H 0.062 0.938 24 H 0.099 0.901 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.095 0.905 30 H 0.355 0.645 31 H 0.274 0.726 32 H 0.095 0.905 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.670 12.865 -7.491 15.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.006 4.006 3 C -0.203 4.203 4 C -0.102 4.102 5 C -0.202 4.202 6 C 0.432 3.568 7 O -0.426 6.426 8 N -0.355 5.355 9 C 0.009 3.991 10 C 0.156 3.844 11 O -0.363 6.363 12 C -0.648 4.648 13 H 0.091 0.909 14 C -0.172 4.172 15 N -0.523 5.523 16 Si 0.858 3.142 17 H -0.201 1.201 18 H -0.194 1.194 19 H -0.205 1.205 20 C -0.062 4.062 21 H 0.080 0.920 22 H 0.087 0.913 23 H 0.081 0.919 24 H 0.117 0.883 25 H 0.079 0.921 26 H 0.086 0.914 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.113 0.887 30 H 0.205 0.795 31 H 0.085 0.915 32 H 0.113 0.887 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -5.482 13.024 -7.441 15.970 hybrid contribution 1.082 0.316 0.493 1.230 sum -4.400 13.340 -6.949 15.672 Atomic orbital electron populations 1.21837 0.92905 1.02928 1.02636 1.18439 0.96167 0.95084 0.90874 1.21845 1.01708 0.94121 1.02625 1.22502 0.94925 0.98051 0.94681 1.20862 1.03215 1.00425 0.95680 1.14333 0.78064 0.80089 0.84290 1.90796 1.54183 1.65521 1.32054 1.50040 1.63272 1.04283 1.17946 1.23340 0.99199 0.82290 0.94250 1.20508 0.81285 0.93255 0.89333 1.86458 1.24167 1.72256 1.53456 1.22257 1.08489 1.00249 1.33802 0.90858 1.25801 1.03572 0.92277 0.95561 1.70768 1.16841 1.21761 1.42886 0.84321 0.75453 0.76662 0.77756 1.20145 1.19354 1.20484 1.24826 1.01702 0.84794 0.94888 0.92014 0.91296 0.91861 0.88277 0.92061 0.91369 0.91999 0.90300 0.88657 0.79455 0.91520 0.88695 0.90813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.15 37.16 0.34 -0.95 16 2 C 0.01 0.13 3.30 -93.41 -0.31 -0.18 16 3 C -0.15 -1.25 9.15 37.16 0.34 -0.91 16 4 C -0.10 -1.50 12.56 -37.12 -0.47 -1.96 16 5 C -0.20 -3.69 13.34 -38.84 -0.52 -4.21 16 6 C 0.64 13.80 7.88 -14.34 -0.11 13.69 16 7 O -0.55 -13.04 17.81 5.27 0.09 -12.95 16 8 N -0.62 -13.22 3.61 -181.19 -0.65 -13.87 16 9 C 0.13 2.78 8.23 -2.97 -0.02 2.76 16 10 C 0.20 4.53 1.06 -90.84 -0.10 4.43 16 11 O -0.55 -12.97 13.42 -35.23 -0.47 -13.44 16 12 C -0.61 -15.68 9.04 -34.44 -0.31 -15.99 16 13 H 0.07 2.00 8.04 -52.49 -0.42 1.57 16 14 C 0.04 0.93 5.47 -17.82 -0.10 0.84 16 15 N -0.89 -25.12 13.70 55.43 0.76 -24.36 16 16 Si 1.03 21.94 24.79 -169.99 -4.21 17.73 16 17 H -0.27 -5.56 6.95 56.52 0.39 -5.16 16 18 H -0.27 -5.10 4.86 56.52 0.27 -4.83 16 19 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 20 C 0.06 1.25 6.73 -2.97 -0.02 1.23 16 21 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 22 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 29 H 0.10 1.88 8.09 -51.93 -0.42 1.46 16 30 H 0.35 7.66 4.23 45.56 0.19 7.85 16 31 H 0.27 7.70 8.72 -40.82 -0.36 7.34 16 32 H 0.09 1.86 8.09 -51.93 -0.42 1.44 16 33 H 0.07 1.45 6.54 -51.92 -0.34 1.11 16 LS Contribution 286.98 15.07 4.32 4.32 Total: -1.00 -30.82 286.98 -5.52 -36.33 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -4.08 Total: 7.51 kcal Atomic # 6 Polarization: 0.00 SS G_CDS: -1.27 Total: -1.28 kcal Atomic # 7 Polarization: -38.33 SS G_CDS: 0.11 Total: -38.23 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.38 Total: -26.39 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.21 Total: 17.73 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.82 -5.52 -36.33 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331170257.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.868 kcal (2) G-P(sol) polarization free energy of solvation -30.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds