Wall clock time and date at job start Sun Mar 29 2020 21:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48502 * 109.46643 * 269.99720 * 3 2 1 5 5 H 1.48498 * 109.47339 * 29.99204 * 3 2 1 6 6 H 1.48496 * 109.47360 * 149.99804 * 3 2 1 7 7 C 1.37874 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00499 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99845 * 180.02562 * 7 2 1 10 10 O 1.42902 * 113.41442 * 313.20044 * 9 7 2 11 11 C 1.53504 * 114.20523 * 180.02562 * 9 7 2 12 12 N 1.47066 * 88.04678 * 220.37340 * 11 9 7 13 13 C 1.34779 * 136.05571 * 207.12426 * 12 11 9 14 14 O 1.21614 * 119.99985 * 359.97438 * 13 12 11 15 15 C 1.47104 * 119.99600 * 180.02562 * 13 12 11 16 16 C 1.32996 * 119.99484 * 179.97438 * 15 13 12 17 17 C 1.51405 * 136.31711 * 359.63325 * 16 15 13 18 18 C 1.53380 * 87.51802 * 206.05260 * 17 16 15 19 19 C 1.51413 * 136.31467 * 179.97438 * 16 15 13 20 20 C 1.47064 * 87.88659 * 27.09306 * 12 11 9 21 21 H 0.96996 * 120.00113 * 0.02562 * 1 2 3 22 22 H 0.96697 * 113.99512 * 46.80894 * 10 9 7 23 23 H 1.09002 * 113.46865 * 105.56435 * 11 9 7 24 24 H 1.08999 * 113.46581 * 335.18211 * 11 9 7 25 25 H 1.07994 * 120.00273 * 359.97438 * 15 13 12 26 26 H 1.09003 * 113.56245 * 320.63195 * 17 16 15 27 27 H 1.09004 * 113.56189 * 91.36857 * 17 16 15 28 28 H 1.09003 * 113.97052 * 220.29422 * 18 17 16 29 29 H 1.08996 * 113.71002 * 88.80432 * 18 17 16 30 30 H 1.08993 * 113.56028 * 268.63038 * 19 16 15 31 31 H 1.08999 * 113.55856 * 39.36712 * 19 16 15 32 32 H 1.08999 * 113.47096 * 87.65665 * 20 12 11 33 33 H 1.09005 * 113.46966 * 218.04058 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6998 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 4.0797 -0.2965 -0.9548 11 6 4.1409 -2.5940 0.0010 12 7 5.1413 -2.0894 0.9536 13 6 6.4143 -2.3930 1.2758 14 8 6.9883 -3.2972 0.6997 15 6 7.1090 -1.6313 2.3252 16 6 8.3650 -1.9313 2.6434 17 6 9.3967 -2.9439 2.1932 18 6 10.0303 -2.8175 3.5843 19 6 9.3994 -1.4165 3.6220 20 6 4.1416 -1.1072 1.3994 21 1 -0.4850 0.8400 -0.0004 22 1 3.6811 0.5845 -0.9524 23 1 4.5640 -2.8797 -0.9620 24 1 3.4910 -3.3621 0.4203 25 1 6.5992 -0.8286 2.8371 26 1 8.9801 -3.9313 1.9940 27 1 10.0377 -2.5844 1.3881 28 1 11.1203 -2.8092 3.5753 29 1 9.6155 -3.5074 4.3191 30 1 10.0410 -0.6385 3.2087 31 1 8.9850 -1.1513 4.5947 32 1 3.4913 -1.4785 2.1913 33 1 4.5654 -0.1288 1.6263 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339619041.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:11 Heat of formation + Delta-G solvation = 11.796109 kcal Electronic energy + Delta-G solvation = -16668.561545 eV Core-core repulsion = 13890.756100 eV Total energy + Delta-G solvation = -2777.805445 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.88324 -38.80987 -37.26897 -34.53728 -32.56594 -30.96693 -28.72155 -25.83594 -25.66856 -25.23881 -22.93930 -20.54968 -19.03265 -17.78678 -17.38665 -16.59402 -16.36523 -15.59209 -15.40010 -14.73115 -14.42253 -13.66218 -13.57572 -13.09162 -12.81840 -12.52002 -12.36547 -12.26737 -11.89170 -11.70896 -11.16609 -11.04823 -10.92853 -10.59290 -10.48848 -10.12063 -9.65641 -9.23926 -9.10214 -9.02770 -8.67029 -7.98060 -6.44224 -4.50185 1.55681 2.98198 3.01687 3.13436 3.41825 3.72012 4.01102 4.36725 4.45716 4.64258 4.71327 5.02127 5.04665 5.23226 5.46419 5.54889 5.57825 5.64114 5.72659 5.91661 6.07853 6.12702 6.14042 6.19069 6.30423 6.39712 6.52257 6.60506 6.76748 7.17747 7.99321 8.36763 8.50238 8.59695 8.70353 9.13384 10.67949 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.044577 B = 0.005899 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.982717 B = 4745.337739 C = 5041.586124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.080 3.920 3 Si 0.859 3.141 4 H -0.266 1.266 5 H -0.283 1.283 6 H -0.257 1.257 7 C -0.533 4.533 8 H 0.093 0.907 9 C 0.195 3.805 10 O -0.550 6.550 11 C 0.122 3.878 12 N -0.633 5.633 13 C 0.572 3.428 14 O -0.561 6.561 15 C -0.178 4.178 16 C -0.079 4.079 17 C -0.103 4.103 18 C -0.142 4.142 19 C -0.106 4.106 20 C 0.061 3.939 21 H 0.271 0.729 22 H 0.351 0.649 23 H 0.071 0.929 24 H 0.094 0.906 25 H 0.128 0.872 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.075 0.925 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.578 0.064 7.194 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.125 4.125 3 Si 0.688 3.312 4 H -0.192 1.192 5 H -0.210 1.210 6 H -0.183 1.183 7 C -0.571 4.571 8 H 0.111 0.889 9 C 0.153 3.847 10 O -0.361 6.361 11 C 0.000 4.000 12 N -0.366 5.366 13 C 0.364 3.636 14 O -0.442 6.442 15 C -0.199 4.199 16 C -0.081 4.081 17 C -0.139 4.139 18 C -0.179 4.179 19 C -0.143 4.143 20 C -0.062 4.062 21 H 0.082 0.918 22 H 0.204 0.796 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.146 0.854 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.094 0.906 29 H 0.101 0.899 30 H 0.116 0.884 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 14.260 -0.862 6.821 15.831 hybrid contribution -0.166 1.574 0.279 1.607 sum 14.094 0.713 7.100 15.798 Atomic orbital electron populations 1.69847 1.06048 1.27672 1.47529 1.25000 0.94930 0.98993 0.93585 0.87316 0.80291 0.84336 0.79249 1.19239 1.20985 1.18263 1.21151 0.87350 0.95779 1.52821 0.88901 1.20283 0.92376 0.87543 0.84452 1.86480 1.64197 1.24856 1.60586 1.23133 0.86830 0.97479 0.92583 1.49555 1.10047 1.37011 1.40001 1.17839 0.79968 0.83102 0.82713 1.90711 1.66078 1.32498 1.54921 1.21611 0.95140 1.02455 1.00687 1.23339 0.93279 0.96059 0.95393 1.22164 0.95426 0.99749 0.96609 1.22723 1.00256 0.96849 0.98093 1.22313 0.95909 0.97745 0.98349 1.24477 0.87905 0.91600 1.02221 0.91837 0.79638 0.91012 0.88799 0.85396 0.89649 0.88714 0.90642 0.89859 0.88393 0.90613 0.88769 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.35 13.96 55.43 0.77 -23.58 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.86 18.88 24.42 -169.99 -4.15 14.73 16 4 H -0.27 -5.71 7.06 56.52 0.40 -5.32 16 5 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 6 H -0.26 -5.33 5.49 56.52 0.31 -5.02 16 7 C -0.53 -13.75 9.27 -34.44 -0.32 -14.07 16 8 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 9 C 0.19 4.49 1.10 -91.19 -0.10 4.39 16 10 O -0.55 -13.18 13.32 -35.23 -0.47 -13.65 16 11 C 0.12 2.60 8.03 -8.50 -0.07 2.54 16 12 N -0.63 -13.18 3.69 -186.41 -0.69 -13.87 16 13 C 0.57 11.64 8.01 -12.66 -0.10 11.54 16 14 O -0.56 -12.67 15.93 5.27 0.08 -12.59 16 15 C -0.18 -2.92 9.86 -37.80 -0.37 -3.29 16 16 C -0.08 -1.11 6.93 -100.48 -0.70 -1.80 16 17 C -0.10 -1.32 6.99 -27.56 -0.19 -1.51 16 18 C -0.14 -1.36 8.17 -26.18 -0.21 -1.58 16 19 C -0.11 -1.07 7.96 -27.39 -0.22 -1.28 16 20 C 0.06 1.25 7.18 -8.44 -0.06 1.19 16 21 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 22 H 0.35 7.98 3.16 45.56 0.14 8.13 16 23 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 24 H 0.09 1.85 8.10 -51.93 -0.42 1.43 16 25 H 0.13 1.87 7.98 -52.49 -0.42 1.45 16 26 H 0.08 1.26 7.49 -51.93 -0.39 0.87 16 27 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.09 1.80 8.10 -51.93 -0.42 1.38 16 33 H 0.06 1.24 7.15 -51.93 -0.37 0.86 16 LS Contribution 277.15 15.07 4.18 4.18 Total: -1.00 -30.03 277.15 -6.78 -36.81 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -4.06 Total: 9.86 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.44 Total: -1.89 kcal Atomic # 7 Polarization: -37.53 SS G_CDS: 0.09 Total: -37.45 kcal Atomic # 8 Polarization: -25.85 SS G_CDS: -0.39 Total: -26.24 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -4.15 Total: 14.73 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -30.03 -6.78 -36.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339619041.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.606 kcal (2) G-P(sol) polarization free energy of solvation -30.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.810 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds