Wall clock time and date at job start Sun Mar 29 2020 21:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00062 * 2 1 4 4 H 1.48502 * 109.46643 * 269.99720 * 3 2 1 5 5 H 1.48498 * 109.47339 * 29.99204 * 3 2 1 6 6 H 1.48496 * 109.47360 * 149.99804 * 3 2 1 7 7 C 1.37874 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00499 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99845 * 180.02562 * 7 2 1 10 10 O 1.42902 * 113.41442 * 313.20044 * 9 7 2 11 11 C 1.53504 * 114.20523 * 180.02562 * 9 7 2 12 12 N 1.47066 * 88.04678 * 220.37340 * 11 9 7 13 13 C 1.34779 * 136.05571 * 207.12426 * 12 11 9 14 14 O 1.21614 * 119.99985 * 359.97438 * 13 12 11 15 15 C 1.47104 * 119.99600 * 180.02562 * 13 12 11 16 16 C 1.32996 * 119.99484 * 179.97438 * 15 13 12 17 17 C 1.51405 * 136.31711 * 359.63325 * 16 15 13 18 18 C 1.53380 * 87.51802 * 206.05260 * 17 16 15 19 19 C 1.51413 * 136.31467 * 179.97438 * 16 15 13 20 20 C 1.47064 * 87.88659 * 27.09306 * 12 11 9 21 21 H 0.96996 * 120.00113 * 0.02562 * 1 2 3 22 22 H 0.96697 * 113.99512 * 46.80894 * 10 9 7 23 23 H 1.09002 * 113.46865 * 105.56435 * 11 9 7 24 24 H 1.08999 * 113.46581 * 335.18211 * 11 9 7 25 25 H 1.07994 * 120.00273 * 359.97438 * 15 13 12 26 26 H 1.09003 * 113.56245 * 320.63195 * 17 16 15 27 27 H 1.09004 * 113.56189 * 91.36857 * 17 16 15 28 28 H 1.09003 * 113.97052 * 220.29422 * 18 17 16 29 29 H 1.08996 * 113.71002 * 88.80432 * 18 17 16 30 30 H 1.08993 * 113.56028 * 268.63038 * 19 16 15 31 31 H 1.08999 * 113.55856 * 39.36712 * 19 16 15 32 32 H 1.08999 * 113.47096 * 87.65665 * 20 12 11 33 33 H 1.09005 * 113.46966 * 218.04058 * 20 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6528 0.6998 6 1 3.5466 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 8 4.0797 -0.2965 -0.9548 11 6 4.1409 -2.5940 0.0010 12 7 5.1413 -2.0894 0.9536 13 6 6.4143 -2.3930 1.2758 14 8 6.9883 -3.2972 0.6997 15 6 7.1090 -1.6313 2.3252 16 6 8.3650 -1.9313 2.6434 17 6 9.3967 -2.9439 2.1932 18 6 10.0303 -2.8175 3.5843 19 6 9.3994 -1.4165 3.6220 20 6 4.1416 -1.1072 1.3994 21 1 -0.4850 0.8400 -0.0004 22 1 3.6811 0.5845 -0.9524 23 1 4.5640 -2.8797 -0.9620 24 1 3.4910 -3.3621 0.4203 25 1 6.5992 -0.8286 2.8371 26 1 8.9801 -3.9313 1.9940 27 1 10.0377 -2.5844 1.3881 28 1 11.1203 -2.8092 3.5753 29 1 9.6155 -3.5074 4.3191 30 1 10.0410 -0.6385 3.2087 31 1 8.9850 -1.1513 4.5947 32 1 3.4913 -1.4785 2.1913 33 1 4.5654 -0.1288 1.6263 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339619041.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:11 Heat of formation + Delta-G solvation = -9.875942 kcal Electronic energy + Delta-G solvation = -16669.501316 eV Core-core repulsion = 13890.756100 eV Total energy + Delta-G solvation = -2778.745216 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.50591 -40.00921 -38.73586 -36.34510 -34.56968 -32.26109 -30.36613 -27.48466 -26.96122 -26.68068 -24.04781 -22.15174 -20.53945 -19.46534 -18.88273 -18.15716 -18.14423 -16.82410 -16.54271 -16.22552 -15.83932 -15.33144 -15.27975 -14.86004 -14.49429 -14.11616 -13.90402 -13.34819 -12.99482 -12.90410 -12.72038 -12.59231 -12.40999 -11.93157 -11.92697 -11.62001 -11.26416 -11.09194 -10.77180 -10.45569 -10.27454 -9.62004 -8.44238 -6.56667 0.33162 1.24712 1.28119 1.39926 1.88741 2.16256 2.25531 2.73912 3.14931 3.31767 3.54366 3.76767 3.80735 4.02328 4.25672 4.35127 4.42518 4.56220 4.59482 4.66212 4.72018 4.73144 4.84735 4.89854 4.97546 5.04421 5.22060 5.29740 5.35235 5.65664 6.01002 6.51034 6.64588 6.79060 7.09927 7.14386 8.71174 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.044577 B = 0.005899 C = 0.005552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.982717 B = 4745.337739 C = 5041.586124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.030 3.970 3 Si 0.918 3.082 4 H -0.257 1.257 5 H -0.279 1.279 6 H -0.233 1.233 7 C -0.542 4.542 8 H 0.060 0.940 9 C 0.184 3.816 10 O -0.559 6.559 11 C 0.118 3.882 12 N -0.637 5.637 13 C 0.564 3.436 14 O -0.595 6.595 15 C -0.211 4.211 16 C -0.070 4.070 17 C -0.119 4.119 18 C -0.127 4.127 19 C -0.093 4.093 20 C 0.076 3.924 21 H 0.275 0.725 22 H 0.356 0.644 23 H 0.062 0.938 24 H 0.103 0.897 25 H 0.147 0.853 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.102 0.898 29 H 0.086 0.914 30 H 0.121 0.879 31 H 0.094 0.906 32 H 0.106 0.894 33 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.249 1.725 8.905 18.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.171 4.171 3 Si 0.743 3.257 4 H -0.183 1.183 5 H -0.205 1.205 6 H -0.157 1.157 7 C -0.580 4.580 8 H 0.078 0.922 9 C 0.143 3.857 10 O -0.371 6.371 11 C -0.005 4.005 12 N -0.370 5.370 13 C 0.358 3.642 14 O -0.479 6.479 15 C -0.231 4.231 16 C -0.072 4.072 17 C -0.156 4.156 18 C -0.164 4.164 19 C -0.130 4.130 20 C -0.047 4.047 21 H 0.084 0.916 22 H 0.209 0.791 23 H 0.080 0.920 24 H 0.121 0.879 25 H 0.164 0.836 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.105 0.895 30 H 0.139 0.861 31 H 0.113 0.887 32 H 0.123 0.877 33 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.944 0.794 8.544 18.993 hybrid contribution -0.958 0.908 -0.299 1.354 sum 15.986 1.703 8.246 18.068 Atomic orbital electron populations 1.69981 1.07929 1.28919 1.49042 1.25797 0.95635 1.02794 0.92916 0.86330 0.79930 0.79418 0.80022 1.18271 1.20495 1.15724 1.21238 0.89017 0.94821 1.52892 0.92229 1.20297 0.90838 0.88440 0.86129 1.86475 1.64117 1.25285 1.61217 1.23118 0.87412 0.97106 0.92832 1.49582 1.10372 1.37140 1.39895 1.18621 0.79483 0.82960 0.83094 1.90685 1.66583 1.34159 1.56445 1.21501 0.96287 1.03995 1.01306 1.24010 0.92951 0.95319 0.94906 1.22369 0.95855 0.98139 0.99213 1.22708 1.01820 0.96580 0.95309 1.22427 0.94163 0.98385 0.97992 1.24275 0.87580 0.92501 1.00322 0.91566 0.79116 0.91954 0.87910 0.83572 0.92364 0.87940 0.87950 0.89547 0.86101 0.88708 0.87652 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.25 13.96 21.45 0.30 -51.95 16 2 C 0.03 1.58 5.47 84.65 0.46 2.04 16 3 Si 0.92 37.91 24.42 68.60 1.68 39.59 16 4 H -0.26 -10.22 7.06 99.48 0.70 -9.51 16 5 H -0.28 -11.29 7.11 99.48 0.71 -10.58 16 6 H -0.23 -8.67 5.49 99.48 0.55 -8.12 16 7 C -0.54 -28.45 9.27 25.60 0.24 -28.21 16 8 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 9 C 0.18 8.41 1.10 -11.16 -0.01 8.40 16 10 O -0.56 -26.11 13.32 -148.98 -1.98 -28.09 16 11 C 0.12 5.11 8.03 83.18 0.67 5.78 16 12 N -0.64 -26.14 3.69 -862.34 -3.18 -29.32 16 13 C 0.56 22.69 8.01 86.57 0.69 23.39 16 14 O -0.59 -27.21 15.93 -4.07 -0.06 -27.27 16 15 C -0.21 -6.51 9.86 23.43 0.23 -6.28 16 16 C -0.07 -1.78 6.93 -17.17 -0.12 -1.90 16 17 C -0.12 -2.84 6.99 30.06 0.21 -2.63 16 18 C -0.13 -1.95 8.17 30.95 0.25 -1.70 16 19 C -0.09 -1.44 7.96 30.17 0.24 -1.20 16 20 C 0.08 2.97 7.18 83.22 0.60 3.57 16 21 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 22 H 0.36 15.41 3.16 -74.06 -0.23 15.18 16 23 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 24 H 0.10 4.17 8.10 -2.39 -0.02 4.15 16 25 H 0.15 3.86 7.98 -2.91 -0.02 3.84 16 26 H 0.06 1.71 7.49 -2.39 -0.02 1.69 16 27 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 28 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.12 1.44 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.11 3.86 8.10 -2.39 -0.02 3.84 16 33 H 0.08 2.90 7.15 -2.38 -0.02 2.88 16 Total: -1.00 -66.29 277.15 0.92 -65.37 By element: Atomic # 1 Polarization: 29.73 SS G_CDS: 0.71 Total: 30.44 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: 3.46 Total: 1.25 kcal Atomic # 7 Polarization: -78.39 SS G_CDS: -2.88 Total: -81.28 kcal Atomic # 8 Polarization: -53.32 SS G_CDS: -2.05 Total: -55.37 kcal Atomic # 14 Polarization: 37.91 SS G_CDS: 1.68 Total: 39.59 kcal Total: -66.29 0.92 -65.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339619041.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.490 kcal (2) G-P(sol) polarization free energy of solvation -66.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds