Wall clock time and date at job start Sun Mar 29 2020 21:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47122 * 326.38595 * 3 2 1 5 5 C 1.53003 * 109.47235 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47381 * 180.02562 * 5 4 3 7 7 O 1.20829 * 120.00052 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00118 * 180.02562 * 6 5 4 9 9 C 1.45204 * 117.00194 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46758 * 29.99742 * 9 8 6 11 11 C 1.50697 * 109.47323 * 150.00089 * 9 8 6 12 12 H 1.08001 * 120.00051 * 359.97438 * 11 9 8 13 13 C 1.37871 * 119.99978 * 180.02562 * 11 9 8 14 14 N 1.31510 * 120.00232 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99946 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46920 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.46879 * 119.99993 * 15 13 11 18 18 H 1.48500 * 109.47202 * 239.99949 * 15 13 11 19 19 C 1.53003 * 109.46851 * 269.99901 * 9 8 6 20 20 C 1.53001 * 117.51964 * 356.28317 * 19 9 8 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 9 22 22 H 1.09001 * 109.47221 * 206.39014 * 3 2 1 23 23 H 1.08993 * 109.47236 * 86.38968 * 3 2 1 24 24 H 1.09001 * 109.47233 * 60.00284 * 4 3 2 25 25 H 1.09002 * 109.47308 * 300.00422 * 4 3 2 26 26 H 1.09001 * 109.46835 * 59.99971 * 5 4 3 27 27 H 1.09004 * 109.46833 * 300.00686 * 5 4 3 28 28 H 0.97001 * 120.00567 * 179.97438 * 14 13 11 29 29 H 1.09002 * 115.54973 * 210.58100 * 19 9 8 30 30 H 1.09001 * 117.49733 * 214.97413 * 20 19 9 31 31 H 1.08995 * 117.49577 * 359.97438 * 20 19 9 32 32 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 33 33 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.2004 0.7986 5 6 4.6485 -1.1994 0.7991 6 6 5.1514 -2.3827 1.5851 7 8 4.3666 -3.1481 2.0932 8 8 6.4712 -2.5858 1.7217 9 6 6.8835 -3.7460 2.4914 10 1 6.1338 -4.5313 2.3946 11 6 8.2067 -4.2480 1.9738 12 1 8.6894 -3.7457 1.1485 13 6 8.8006 -5.3491 2.5531 14 7 8.2127 -5.9611 3.5577 15 14 10.4406 -5.9718 1.9110 16 1 10.8881 -5.1154 0.7833 17 1 11.4490 -5.9239 3.0001 18 1 10.2882 -7.3715 1.4388 19 6 7.0266 -3.3562 3.9641 20 6 6.8141 -1.8859 4.3301 21 6 5.7598 -2.9284 4.7080 22 1 2.9709 0.9214 0.4568 23 1 2.9713 -0.0639 -1.0255 24 1 2.7556 -2.1212 0.3418 25 1 2.7551 -1.1359 1.8242 26 1 5.0110 -0.2786 1.2561 27 1 5.0122 -1.2637 -0.2264 28 1 8.6303 -6.7361 3.9651 29 1 7.7773 -3.9114 4.5265 30 1 7.4250 -1.4739 5.1333 31 1 6.5726 -1.1959 3.5216 32 1 4.8246 -2.9243 4.1481 33 1 5.6772 -3.2022 5.7598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344935275.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:48 Heat of formation + Delta-G solvation = -51.695963 kcal Electronic energy + Delta-G solvation = -16461.946330 eV Core-core repulsion = 13681.387662 eV Total energy + Delta-G solvation = -2780.558668 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.85857 -37.27204 -36.54808 -34.79784 -34.28170 -32.83537 -29.31690 -27.69146 -23.75601 -22.74714 -21.47457 -20.31261 -19.02017 -17.90353 -16.86215 -16.57843 -16.27538 -15.45181 -15.17194 -14.49968 -14.06257 -14.01925 -13.48318 -13.04802 -12.69600 -12.43999 -11.94635 -11.83616 -11.70410 -11.42506 -11.34138 -11.06639 -11.00586 -10.90434 -10.58038 -10.32636 -10.06807 -9.71644 -9.50744 -9.15160 -8.55990 -8.47414 -6.21352 -4.28806 2.57822 2.63758 2.92954 3.21830 3.28945 3.32838 3.53012 3.90335 4.30932 4.79411 4.83958 4.92185 4.96962 5.10973 5.27395 5.30305 5.52535 5.77983 5.82737 5.92758 6.06871 6.10535 6.12695 6.41398 6.66801 6.86783 6.98439 7.17045 7.40879 7.54639 7.57364 7.81633 8.09588 8.58265 8.84914 9.36075 10.85773 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038096 B = 0.005253 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.810000 B = 5329.091682 C = 5681.394424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C 0.210 3.790 3 C -0.026 4.026 4 C -0.107 4.107 5 C -0.116 4.116 6 C 0.448 3.552 7 O -0.517 6.517 8 O -0.352 6.352 9 C 0.247 3.753 10 H 0.052 0.948 11 C -0.519 4.519 12 H 0.071 0.929 13 C 0.064 3.936 14 N -0.884 5.884 15 Si 0.909 3.091 16 H -0.270 1.270 17 H -0.281 1.281 18 H -0.282 1.282 19 C -0.114 4.114 20 C -0.196 4.196 21 C -0.208 4.208 22 H 0.111 0.889 23 H 0.112 0.888 24 H 0.081 0.919 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.105 0.895 28 H 0.266 0.734 29 H 0.126 0.874 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.703 10.429 -4.587 11.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.120 5.120 2 C -0.108 4.108 3 C -0.066 4.066 4 C -0.146 4.146 5 C -0.154 4.154 6 C 0.291 3.709 7 O -0.407 6.407 8 O -0.268 6.268 9 C 0.195 3.805 10 H 0.070 0.930 11 C -0.557 4.557 12 H 0.089 0.911 13 C -0.139 4.139 14 N -0.521 5.521 15 Si 0.736 3.264 16 H -0.194 1.194 17 H -0.207 1.207 18 H -0.208 1.208 19 C -0.133 4.133 20 C -0.233 4.233 21 C -0.245 4.245 22 H 0.129 0.871 23 H 0.130 0.870 24 H 0.100 0.900 25 H 0.099 0.901 26 H 0.122 0.878 27 H 0.123 0.877 28 H 0.075 0.925 29 H 0.144 0.856 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.572 10.018 -4.293 12.241 hybrid contribution 1.274 -0.503 0.009 1.369 sum -4.298 9.515 -4.284 11.286 Atomic orbital electron populations 1.81227 1.13221 1.08693 1.08889 1.29221 0.95356 0.93113 0.93079 1.19336 0.81516 1.01669 1.04099 1.21347 0.93968 0.97460 1.01784 1.21298 0.95400 0.96753 1.01939 1.23324 0.82703 0.86115 0.78731 1.90598 1.57287 1.46565 1.46301 1.86492 1.22827 1.49973 1.67545 1.20148 0.96008 0.79925 0.84423 0.93021 1.20993 1.04150 1.12652 1.17921 0.91105 1.24911 0.98262 0.95909 0.94825 1.70002 1.38726 1.20574 1.22821 0.86267 0.82588 0.78668 0.78913 1.19424 1.20735 1.20777 1.23012 0.98172 0.94140 0.97984 1.22795 1.03930 0.93971 1.02581 1.23139 0.95463 1.05455 1.00446 0.87076 0.87044 0.90026 0.90085 0.87833 0.87691 0.92453 0.85596 0.90436 0.89898 0.88614 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -5.96 18.54 42.15 0.78 -5.17 16 2 C 0.21 2.09 15.43 -20.76 -0.32 1.77 16 3 C -0.03 -0.16 5.70 -29.52 -0.17 -0.32 16 4 C -0.11 -1.00 4.46 -26.73 -0.12 -1.12 16 5 C -0.12 -1.24 5.81 -27.88 -0.16 -1.40 16 6 C 0.45 8.09 6.81 36.00 0.25 8.34 16 7 O -0.52 -10.88 12.93 -18.75 -0.24 -11.13 16 8 O -0.35 -7.60 8.49 -39.25 -0.33 -7.93 16 9 C 0.25 6.28 2.39 -27.88 -0.07 6.21 16 10 H 0.05 1.48 7.16 -51.93 -0.37 1.10 16 11 C -0.52 -13.96 8.90 -34.44 -0.31 -14.27 16 12 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 13 C 0.06 1.70 5.16 -17.82 -0.09 1.60 16 14 N -0.88 -24.44 11.66 55.43 0.65 -23.80 16 15 Si 0.91 20.42 29.54 -169.99 -5.02 15.40 16 16 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 17 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 18 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 19 C -0.11 -2.74 5.23 -90.61 -0.47 -3.21 16 20 C -0.20 -3.91 9.74 -26.73 -0.26 -4.17 16 21 C -0.21 -4.41 9.87 -26.73 -0.26 -4.67 16 22 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 23 H 0.11 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 25 H 0.08 0.87 8.10 -51.93 -0.42 0.45 16 26 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 29 H 0.13 3.31 6.55 -51.93 -0.34 2.97 16 30 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 31 H 0.08 1.56 6.67 -51.93 -0.35 1.22 16 32 H 0.10 2.08 5.56 -51.93 -0.29 1.79 16 33 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 289.08 15.07 4.36 4.36 Total: -1.00 -31.77 289.08 -6.07 -37.84 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.27 Total: 1.69 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: -1.99 Total: -11.25 kcal Atomic # 7 Polarization: -30.40 SS G_CDS: 1.43 Total: -28.97 kcal Atomic # 8 Polarization: -18.48 SS G_CDS: -0.58 Total: -19.06 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -31.77 -6.07 -37.84 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344935275.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.853 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds