Wall clock time and date at job start Sun Mar 29 2020 21:51:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47122 * 326.38595 * 3 2 1 5 5 C 1.53003 * 109.47235 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47381 * 180.02562 * 5 4 3 7 7 O 1.20829 * 120.00052 * 359.97438 * 6 5 4 8 8 O 1.34228 * 120.00118 * 180.02562 * 6 5 4 9 9 C 1.45204 * 117.00194 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.46758 * 29.99742 * 9 8 6 11 11 C 1.50697 * 109.47323 * 150.00089 * 9 8 6 12 12 H 1.08001 * 120.00051 * 359.97438 * 11 9 8 13 13 C 1.37871 * 119.99978 * 180.02562 * 11 9 8 14 14 N 1.31510 * 120.00232 * 359.97438 * 13 11 9 15 15 Si 1.86807 * 119.99946 * 179.97438 * 13 11 9 16 16 H 1.48501 * 109.46920 * 359.97438 * 15 13 11 17 17 H 1.48505 * 109.46879 * 119.99993 * 15 13 11 18 18 H 1.48500 * 109.47202 * 239.99949 * 15 13 11 19 19 C 1.53003 * 109.46851 * 269.99901 * 9 8 6 20 20 C 1.53001 * 117.51964 * 356.28317 * 19 9 8 21 21 C 1.52999 * 60.00190 * 107.47982 * 20 19 9 22 22 H 1.09001 * 109.47221 * 206.39014 * 3 2 1 23 23 H 1.08993 * 109.47236 * 86.38968 * 3 2 1 24 24 H 1.09001 * 109.47233 * 60.00284 * 4 3 2 25 25 H 1.09002 * 109.47308 * 300.00422 * 4 3 2 26 26 H 1.09001 * 109.46835 * 59.99971 * 5 4 3 27 27 H 1.09004 * 109.46833 * 300.00686 * 5 4 3 28 28 H 0.97001 * 120.00567 * 179.97438 * 14 13 11 29 29 H 1.09002 * 115.54973 * 210.58100 * 19 9 8 30 30 H 1.09001 * 117.49733 * 214.97413 * 20 19 9 31 31 H 1.08995 * 117.49577 * 359.97438 * 20 19 9 32 32 H 1.09004 * 117.50150 * 252.51496 * 21 20 19 33 33 H 1.09004 * 117.49681 * 107.48417 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1185 -1.2004 0.7986 5 6 4.6485 -1.1994 0.7991 6 6 5.1514 -2.3827 1.5851 7 8 4.3666 -3.1481 2.0932 8 8 6.4712 -2.5858 1.7217 9 6 6.8835 -3.7460 2.4914 10 1 6.1338 -4.5313 2.3946 11 6 8.2067 -4.2480 1.9738 12 1 8.6894 -3.7457 1.1485 13 6 8.8006 -5.3491 2.5531 14 7 8.2127 -5.9611 3.5577 15 14 10.4406 -5.9718 1.9110 16 1 10.8881 -5.1154 0.7833 17 1 11.4490 -5.9239 3.0001 18 1 10.2882 -7.3715 1.4388 19 6 7.0266 -3.3562 3.9641 20 6 6.8141 -1.8859 4.3301 21 6 5.7598 -2.9284 4.7080 22 1 2.9709 0.9214 0.4568 23 1 2.9713 -0.0639 -1.0255 24 1 2.7556 -2.1212 0.3418 25 1 2.7551 -1.1359 1.8242 26 1 5.0110 -0.2786 1.2561 27 1 5.0122 -1.2637 -0.2264 28 1 8.6303 -6.7361 3.9651 29 1 7.7773 -3.9114 4.5265 30 1 7.4250 -1.4739 5.1333 31 1 6.5726 -1.1959 3.5216 32 1 4.8246 -2.9243 4.1481 33 1 5.6772 -3.2022 5.7598 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344935275.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:47 Heat of formation + Delta-G solvation = -70.465972 kcal Electronic energy + Delta-G solvation = -16462.760259 eV Core-core repulsion = 13681.387662 eV Total energy + Delta-G solvation = -2781.372597 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.40721 -38.47889 -37.80425 -36.43583 -35.20580 -34.83562 -30.49700 -29.30341 -25.47955 -23.97922 -23.13541 -21.69232 -20.67347 -19.03199 -18.57101 -17.95276 -17.63640 -16.92493 -16.45521 -16.05257 -15.57413 -14.86800 -14.75940 -14.37084 -14.02615 -13.81442 -13.40018 -13.16169 -13.00507 -12.80743 -12.61210 -12.56537 -12.28378 -12.24718 -12.16448 -11.87221 -11.55432 -11.29898 -11.26012 -10.96632 -10.43844 -10.38068 -8.23457 -6.39475 1.44447 1.44736 1.51807 1.58540 1.77597 1.89987 2.19012 2.48467 3.05506 3.17229 3.22004 3.90116 4.11887 4.15570 4.21269 4.30431 4.34575 4.47602 4.73143 4.75154 4.80972 4.91507 5.00564 5.07975 5.22225 5.30402 5.34478 5.39033 5.58164 5.61509 5.99474 6.23031 6.68085 6.68745 7.11639 7.32963 8.83942 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.038096 B = 0.005253 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 734.810000 B = 5329.091682 C = 5681.394424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.236 3.764 3 C -0.014 4.014 4 C -0.103 4.103 5 C -0.102 4.102 6 C 0.435 3.565 7 O -0.555 6.555 8 O -0.359 6.359 9 C 0.255 3.745 10 H 0.003 0.997 11 C -0.542 4.542 12 H 0.070 0.930 13 C 0.016 3.984 14 N -0.915 5.915 15 Si 0.977 3.023 16 H -0.260 1.260 17 H -0.275 1.275 18 H -0.280 1.280 19 C -0.148 4.148 20 C -0.162 4.162 21 C -0.202 4.202 22 H 0.150 0.850 23 H 0.149 0.851 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.141 0.859 27 H 0.138 0.862 28 H 0.267 0.733 29 H 0.097 0.903 30 H 0.101 0.899 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.464 12.748 -5.599 14.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.080 4.080 3 C -0.053 4.053 4 C -0.142 4.142 5 C -0.139 4.139 6 C 0.281 3.719 7 O -0.447 6.447 8 O -0.275 6.275 9 C 0.201 3.799 10 H 0.021 0.979 11 C -0.579 4.579 12 H 0.088 0.912 13 C -0.184 4.184 14 N -0.553 5.553 15 Si 0.801 3.199 16 H -0.184 1.184 17 H -0.201 1.201 18 H -0.205 1.205 19 C -0.167 4.167 20 C -0.199 4.199 21 C -0.239 4.239 22 H 0.168 0.832 23 H 0.166 0.834 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.159 0.841 27 H 0.156 0.844 28 H 0.076 0.924 29 H 0.115 0.885 30 H 0.119 0.881 31 H 0.117 0.883 32 H 0.106 0.894 33 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.346 12.361 -5.316 14.140 hybrid contribution 0.838 -1.240 0.325 1.531 sum -3.507 11.121 -4.991 12.684 Atomic orbital electron populations 1.81255 1.15602 1.11016 1.11392 1.29983 0.96071 0.91029 0.90940 1.19566 0.78469 1.01345 1.05930 1.21257 0.93252 0.98382 1.01337 1.21503 0.95631 0.94224 1.02508 1.24905 0.81027 0.87556 0.78402 1.90588 1.57631 1.48470 1.47981 1.86475 1.25358 1.48296 1.67373 1.19640 0.94045 0.80283 0.85939 0.97944 1.21320 1.05022 1.13376 1.18207 0.91185 1.25799 1.01795 0.95913 0.94844 1.70137 1.40327 1.20907 1.23900 0.85222 0.78108 0.77993 0.78619 1.18363 1.20051 1.20544 1.22703 0.99445 0.97391 0.97118 1.22900 1.02072 0.91913 1.03027 1.23111 0.94459 1.05824 1.00549 0.83200 0.83374 0.92148 0.91866 0.84083 0.84410 0.92372 0.88537 0.88082 0.88322 0.89423 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.60 18.54 20.01 0.37 -13.23 16 2 C 0.24 4.21 15.43 89.44 1.38 5.59 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.06 16 4 C -0.10 -1.67 4.46 30.60 0.14 -1.53 16 5 C -0.10 -1.79 5.81 29.85 0.17 -1.61 16 6 C 0.44 15.33 6.81 71.23 0.48 15.82 16 7 O -0.55 -23.89 12.93 21.95 0.28 -23.61 16 8 O -0.36 -15.34 8.49 -51.39 -0.44 -15.78 16 9 C 0.25 13.30 2.39 29.85 0.07 13.37 16 10 H 0.00 0.17 7.16 -2.39 -0.02 0.16 16 11 C -0.54 -29.73 8.90 25.60 0.23 -29.50 16 12 H 0.07 3.73 7.81 -2.91 -0.02 3.71 16 13 C 0.02 0.88 5.16 84.65 0.44 1.32 16 14 N -0.91 -52.23 11.66 21.44 0.25 -51.98 16 15 Si 0.98 42.05 29.54 68.60 2.03 44.08 16 16 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 17 H -0.28 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 19 C -0.15 -7.19 5.23 -10.79 -0.06 -7.25 16 20 C -0.16 -6.20 9.74 30.59 0.30 -5.90 16 21 C -0.20 -8.55 9.87 30.60 0.30 -8.25 16 22 H 0.15 0.11 8.14 -2.39 -0.02 0.09 16 23 H 0.15 0.17 8.14 -2.39 -0.02 0.15 16 24 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 25 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 26 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.14 1.64 8.14 -2.38 -0.02 1.62 16 28 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 29 H 0.10 5.26 6.55 -2.39 -0.02 5.25 16 30 H 0.10 3.38 8.14 -2.39 -0.02 3.36 16 31 H 0.10 3.43 6.67 -2.39 -0.02 3.42 16 32 H 0.09 3.85 5.56 -2.39 -0.01 3.84 16 33 H 0.09 3.43 8.14 -2.38 -0.02 3.42 16 Total: -1.00 -74.94 289.08 7.22 -67.71 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 1.11 Total: 10.67 kcal Atomic # 6 Polarization: -21.49 SS G_CDS: 3.62 Total: -17.87 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: 0.62 Total: -65.20 kcal Atomic # 8 Polarization: -39.23 SS G_CDS: -0.15 Total: -39.39 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Total: -74.94 7.22 -67.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344935275.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.754 kcal (2) G-P(sol) polarization free energy of solvation -74.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds