Wall clock time and date at job start Sun Mar 29 2020 21:51:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53000 * 109.46941 * 175.54338 * 3 2 1 5 5 C 1.52991 * 109.47260 * 180.02562 * 4 3 2 6 6 C 1.50702 * 109.47370 * 179.97438 * 5 4 3 7 7 O 1.20829 * 119.99856 * 0.02562 * 6 5 4 8 8 O 1.34230 * 120.00293 * 179.97438 * 6 5 4 9 9 C 1.45202 * 117.00174 * 180.02562 * 8 6 5 10 10 H 1.09005 * 109.46556 * 329.99960 * 9 8 6 11 11 C 1.50699 * 109.46854 * 210.00166 * 9 8 6 12 12 H 1.08002 * 120.00511 * 0.02562 * 11 9 8 13 13 C 1.37884 * 119.99783 * 179.97438 * 11 9 8 14 14 N 1.31514 * 119.99573 * 180.27665 * 13 11 9 15 15 Si 1.86800 * 119.99781 * 359.97438 * 13 11 9 16 16 H 1.48501 * 109.46758 * 89.99934 * 15 13 11 17 17 H 1.48499 * 109.47026 * 209.99782 * 15 13 11 18 18 H 1.48496 * 109.47474 * 329.99818 * 15 13 11 19 19 C 1.52993 * 109.47241 * 90.00021 * 9 8 6 20 20 C 1.53002 * 117.49816 * 8.74611 * 19 9 8 21 21 C 1.52997 * 117.50033 * 300.08935 * 19 9 8 22 22 H 1.08997 * 109.46946 * 55.54696 * 3 2 1 23 23 H 1.08993 * 109.47247 * 295.53958 * 3 2 1 24 24 H 1.09001 * 109.47272 * 59.99688 * 4 3 2 25 25 H 1.09004 * 109.46957 * 300.00310 * 4 3 2 26 26 H 1.09004 * 109.47717 * 59.99960 * 5 4 3 27 27 H 1.09004 * 109.47278 * 299.99977 * 5 4 3 28 28 H 0.97004 * 119.99485 * 179.72881 * 14 13 11 29 29 H 1.09005 * 115.55203 * 154.41640 * 19 9 8 30 30 H 1.08995 * 117.49810 * 0.02562 * 20 19 9 31 31 H 1.09005 * 117.49503 * 145.01979 * 20 19 9 32 32 H 1.09006 * 117.50311 * 214.97932 * 21 19 9 33 33 H 1.09007 * 117.50018 * 359.97171 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1173 1.4390 -0.1121 5 6 4.6472 1.4398 -0.1127 6 6 5.1489 2.8565 -0.2238 7 8 4.3633 3.7718 -0.2946 8 8 6.4685 3.1017 -0.2430 9 6 6.8795 4.4901 -0.3512 10 1 6.1287 5.0487 -0.9101 11 6 8.2018 4.5679 -1.0699 12 1 8.6848 3.6643 -1.4116 13 6 8.7946 5.7928 -1.2923 14 7 9.9458 5.8610 -1.9243 15 14 7.9582 7.3558 -0.7032 16 1 8.4076 7.6674 0.6774 17 1 8.3164 8.4792 -1.6058 18 1 6.4858 7.1632 -0.7129 19 6 7.0240 5.0899 1.0488 20 6 6.9306 4.1340 2.2399 21 6 5.7829 5.1025 1.9435 22 1 2.9716 -0.5806 -0.8474 23 1 2.9715 -0.4422 0.9272 24 1 2.7537 2.0203 0.7352 25 1 2.7537 1.8820 -1.0393 26 1 5.0106 0.8586 -0.9603 27 1 5.0112 0.9967 0.8143 28 1 10.3609 6.7231 -2.0842 29 1 7.7124 5.9310 1.1313 30 1 6.7667 3.0779 2.0260 31 1 7.5574 4.3466 3.1061 32 1 5.6549 5.9517 2.6148 33 1 4.8633 4.6838 1.5345 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344935276.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:50 Heat of formation + Delta-G solvation = -65.207497 kcal Electronic energy + Delta-G solvation = -16550.806869 eV Core-core repulsion = 13769.662297 eV Total energy + Delta-G solvation = -2781.144572 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.55094 -38.63769 -37.83545 -36.57745 -35.21911 -34.87546 -30.98625 -29.64219 -25.15492 -24.02562 -23.22918 -22.03598 -20.86681 -19.17622 -18.61158 -18.04943 -17.87505 -17.16225 -16.54559 -16.00106 -15.54540 -14.93281 -14.84210 -14.78505 -14.15242 -13.91188 -13.60157 -13.40862 -13.30797 -12.72301 -12.63643 -12.56991 -12.34542 -12.26411 -12.09349 -11.87821 -11.55379 -11.40961 -11.35997 -10.97458 -10.73662 -10.60258 -8.42373 -6.49227 1.22874 1.31510 1.42427 1.43781 1.75912 1.90299 2.14508 2.21749 2.86466 3.02123 3.18928 3.80811 3.93030 4.05245 4.15288 4.16122 4.20161 4.36253 4.63457 4.73710 4.76874 4.80395 4.88374 4.92131 5.05217 5.15864 5.22427 5.28143 5.38031 5.42739 5.78452 6.22804 6.55377 6.69074 7.01437 7.17353 8.73181 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039220 B = 0.005577 C = 0.005391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.754744 B = 5019.633682 C = 5192.753317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C 0.236 3.764 3 C -0.015 4.015 4 C -0.103 4.103 5 C -0.103 4.103 6 C 0.439 3.561 7 O -0.549 6.549 8 O -0.350 6.350 9 C 0.233 3.767 10 H 0.027 0.973 11 C -0.530 4.530 12 H 0.051 0.949 13 C 0.033 3.967 14 N -0.930 5.930 15 Si 0.934 3.066 16 H -0.256 1.256 17 H -0.285 1.285 18 H -0.256 1.256 19 C -0.204 4.204 20 C -0.148 4.148 21 C -0.190 4.190 22 H 0.147 0.853 23 H 0.150 0.850 24 H 0.067 0.933 25 H 0.061 0.939 26 H 0.136 0.864 27 H 0.143 0.857 28 H 0.273 0.727 29 H 0.093 0.907 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.061 -10.320 7.585 15.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.193 5.193 2 C -0.080 4.080 3 C -0.054 4.054 4 C -0.142 4.142 5 C -0.140 4.140 6 C 0.285 3.715 7 O -0.441 6.441 8 O -0.266 6.266 9 C 0.178 3.822 10 H 0.045 0.955 11 C -0.567 4.567 12 H 0.069 0.931 13 C -0.167 4.167 14 N -0.569 5.569 15 Si 0.759 3.241 16 H -0.181 1.181 17 H -0.212 1.212 18 H -0.181 1.181 19 C -0.222 4.222 20 C -0.185 4.185 21 C -0.227 4.227 22 H 0.164 0.836 23 H 0.168 0.832 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.154 0.846 27 H 0.161 0.839 28 H 0.083 0.917 29 H 0.111 0.889 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.121 0.879 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -10.816 -9.924 7.489 16.479 hybrid contribution 0.461 1.392 -0.245 1.487 sum -10.355 -8.532 7.244 15.247 Atomic orbital electron populations 1.81264 1.15610 1.10709 1.11688 1.29975 0.96053 0.91114 0.90865 1.19567 0.78488 0.97878 1.09505 1.21261 0.93022 0.96183 1.03706 1.21522 0.95778 0.87686 1.09039 1.24921 0.80683 0.94652 0.71290 1.90587 1.57341 1.48835 1.47318 1.86502 1.25757 1.32293 1.82087 1.19914 0.94032 0.76380 0.91834 0.95533 1.20943 1.04339 0.94461 1.36999 0.93115 1.25478 0.94992 1.01701 0.94521 1.69960 1.17956 1.26903 1.42059 0.86074 0.80230 0.79057 0.78769 1.18079 1.21196 1.18050 1.23163 1.01998 1.03316 0.93721 1.22921 1.00862 0.96928 0.97755 1.23285 0.93324 1.03064 1.03020 0.83572 0.83208 0.91439 0.92014 0.84613 0.83885 0.91717 0.88933 0.87746 0.87391 0.87932 0.88439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.99 18.54 20.01 0.37 -12.62 16 2 C 0.24 3.91 15.43 89.44 1.38 5.29 16 3 C -0.02 -0.09 5.70 28.79 0.16 0.07 16 4 C -0.10 -1.43 4.46 30.59 0.14 -1.29 16 5 C -0.10 -1.61 5.81 29.85 0.17 -1.43 16 6 C 0.44 14.05 6.91 71.24 0.49 14.54 16 7 O -0.55 -21.07 13.03 21.96 0.29 -20.79 16 8 O -0.35 -14.16 8.38 -51.42 -0.43 -14.59 16 9 C 0.23 11.23 2.00 29.85 0.06 11.29 16 10 H 0.03 1.41 6.21 -2.38 -0.01 1.39 16 11 C -0.53 -30.21 9.48 25.60 0.24 -29.97 16 12 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 13 C 0.03 1.87 5.44 84.66 0.46 2.33 16 14 N -0.93 -56.26 13.96 21.45 0.30 -55.96 16 15 Si 0.93 44.19 24.48 68.60 1.68 45.87 16 16 H -0.26 -11.25 6.72 99.48 0.67 -10.58 16 17 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 18 H -0.26 -12.02 6.53 99.48 0.65 -11.37 16 19 C -0.20 -8.68 4.45 -10.80 -0.05 -8.73 16 20 C -0.15 -4.93 9.80 30.62 0.30 -4.63 16 21 C -0.19 -6.64 9.85 30.62 0.30 -6.34 16 22 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 23 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 24 H 0.07 1.14 8.10 -2.39 -0.02 1.12 16 25 H 0.06 1.12 8.10 -2.38 -0.02 1.10 16 26 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.14 1.28 8.14 -2.38 -0.02 1.26 16 28 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 29 H 0.09 4.19 4.40 -2.38 -0.01 4.18 16 30 H 0.10 3.22 6.91 -2.39 -0.02 3.20 16 31 H 0.11 3.11 8.14 -2.38 -0.02 3.09 16 32 H 0.10 3.14 8.14 -2.38 -0.02 3.12 16 33 H 0.10 3.52 5.37 -2.38 -0.01 3.51 16 Total: -1.00 -77.20 282.39 6.89 -70.31 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: 1.02 Total: 6.63 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 3.66 Total: -18.86 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: 0.67 Total: -68.58 kcal Atomic # 8 Polarization: -35.23 SS G_CDS: -0.15 Total: -35.37 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.68 Total: 45.87 kcal Total: -77.20 6.89 -70.31 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344935276.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.105 kcal (2) G-P(sol) polarization free energy of solvation -77.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds