Wall clock time and date at job start Sun Mar 29 2020 22:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35122 * 126.44678 * 2 1 4 4 O 1.33929 * 108.77114 * 179.97438 * 3 2 1 5 5 C 1.34915 * 109.38467 * 359.97438 * 4 3 2 6 6 C 1.46654 * 125.98853 * 179.97438 * 5 4 3 7 7 O 1.21698 * 119.99992 * 180.02562 * 6 5 4 8 8 N 1.34782 * 120.00072 * 0.02562 * 6 5 4 9 9 C 1.46493 * 120.00003 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.47380 * 34.99783 * 9 8 6 11 11 C 1.53008 * 109.47375 * 274.99844 * 9 8 6 12 12 C 1.50702 * 109.47271 * 155.00124 * 9 8 6 13 13 H 1.07996 * 119.99721 * 34.99931 * 12 9 8 14 14 C 1.37874 * 119.99995 * 215.00563 * 12 9 8 15 15 N 1.31512 * 120.00144 * 184.90972 * 14 12 9 16 16 Si 1.86800 * 120.00201 * 4.91036 * 14 12 9 17 17 H 1.48499 * 109.47232 * 84.83539 * 16 14 12 18 18 H 1.48499 * 109.47476 * 204.83719 * 16 14 12 19 19 H 1.48507 * 109.47040 * 324.83294 * 16 14 12 20 20 C 1.36548 * 108.02287 * 0.02562 * 5 4 3 21 21 C 1.50700 * 126.64383 * 179.97438 * 20 5 4 22 22 H 1.09001 * 109.47145 * 90.02577 * 1 2 3 23 23 H 1.09002 * 109.47347 * 210.02506 * 1 2 3 24 24 H 1.08993 * 109.46846 * 330.02401 * 1 2 3 25 25 H 1.08001 * 125.61597 * 359.71058 * 3 2 1 26 26 H 0.96998 * 119.99789 * 359.97438 * 8 6 5 27 27 H 1.09002 * 109.46607 * 55.03357 * 11 9 8 28 28 H 1.09000 * 109.46894 * 175.03595 * 11 9 8 29 29 H 1.08995 * 109.46888 * 295.03705 * 11 9 8 30 30 H 0.97000 * 120.00109 * 179.97438 * 15 14 12 31 31 H 1.08995 * 109.47160 * 270.02101 * 21 20 5 32 32 H 1.08996 * 109.47127 * 30.02528 * 21 20 5 33 33 H 1.09007 * 109.46675 * 150.01940 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0869 0.0000 4 8 3.5858 0.6803 0.0006 5 6 3.6260 -0.6683 0.0015 6 6 4.8378 -1.4943 0.0018 7 8 4.7470 -2.7078 0.0022 8 7 6.0521 -0.9093 0.0017 9 6 7.2626 -1.7345 0.0025 10 1 7.0888 -2.6352 -0.5863 11 6 7.6129 -2.1246 1.4400 12 6 8.4031 -0.9538 -0.5982 13 1 8.4729 0.1116 -0.4359 14 6 9.3574 -1.5998 -1.3552 15 7 10.4037 -0.9379 -1.7986 16 14 9.1641 -3.4151 -1.7511 17 1 8.3054 -3.5711 -2.9525 18 1 10.4991 -4.0088 -2.0164 19 1 8.5341 -4.1086 -0.5989 20 6 2.3407 -1.1293 0.0010 21 6 1.9023 -2.5711 0.0011 22 1 -0.3633 -0.0005 -1.0277 23 1 -0.3634 -0.8898 0.5142 24 1 -0.3633 0.8902 0.5134 25 1 1.9771 2.1144 -0.0044 26 1 6.1245 0.0579 0.0010 27 1 6.7551 -2.6117 1.9035 28 1 8.4606 -2.8097 1.4341 29 1 7.8726 -1.2301 2.0061 30 1 11.0753 -1.3925 -2.3309 31 1 1.7975 -2.9191 -1.0265 32 1 2.6476 -3.1774 0.5159 33 1 0.9446 -2.6596 0.5142 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346462474.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:18 Heat of formation + Delta-G solvation = -39.286805 kcal Electronic energy + Delta-G solvation = -16686.759911 eV Core-core repulsion = 13906.739344 eV Total energy + Delta-G solvation = -2780.020567 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.56628 -38.80347 -35.24637 -34.52885 -32.37894 -31.39710 -29.91079 -27.33183 -27.12856 -25.32654 -23.01348 -20.51731 -19.92972 -19.47969 -17.77719 -16.60205 -16.24461 -15.67426 -15.42729 -14.25574 -14.02081 -13.94596 -13.37104 -13.27318 -12.80593 -12.67992 -12.53679 -12.46873 -12.31313 -12.04210 -11.50715 -11.48089 -11.12308 -10.83432 -10.61262 -9.89812 -9.45933 -9.27686 -9.23039 -8.72359 -8.48720 -8.07522 -6.24436 -4.28630 1.33122 2.39256 2.97355 3.26023 3.33715 3.40425 3.69182 3.94361 4.31596 4.76225 4.83700 4.99153 5.16615 5.33484 5.43058 5.49012 5.72442 5.83533 5.88134 5.98170 6.16147 6.26319 6.32230 6.50192 6.58745 6.64977 6.87723 7.01481 7.19492 7.34591 7.48140 8.10035 8.51092 8.74096 8.83437 9.36713 10.87226 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.039836 B = 0.006183 C = 0.005806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.712046 B = 4527.612283 C = 4821.105220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.196 4.196 3 C -0.020 4.020 4 O -0.159 6.159 5 C -0.065 4.065 6 C 0.585 3.415 7 O -0.537 6.537 8 N -0.689 5.689 9 C 0.230 3.770 10 H 0.053 0.947 11 C -0.148 4.148 12 C -0.531 4.531 13 H 0.080 0.920 14 C 0.082 3.918 15 N -0.887 5.887 16 Si 0.874 3.126 17 H -0.272 1.272 18 H -0.285 1.285 19 H -0.260 1.260 20 C -0.102 4.102 21 C -0.090 4.090 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.205 0.795 26 H 0.398 0.602 27 H 0.030 0.970 28 H 0.054 0.946 29 H 0.048 0.952 30 H 0.268 0.732 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.109 2.248 3.759 17.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.197 4.197 3 C -0.090 4.090 4 O -0.054 6.054 5 C -0.117 4.117 6 C 0.370 3.630 7 O -0.418 6.418 8 N -0.336 5.336 9 C 0.128 3.872 10 H 0.070 0.930 11 C -0.207 4.207 12 C -0.569 4.569 13 H 0.098 0.902 14 C -0.123 4.123 15 N -0.524 5.524 16 Si 0.701 3.299 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.184 1.184 20 C -0.105 4.105 21 C -0.146 4.146 22 H 0.085 0.915 23 H 0.085 0.915 24 H 0.083 0.917 25 H 0.221 0.779 26 H 0.232 0.768 27 H 0.049 0.951 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.106 0.894 33 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.646 1.548 3.649 17.112 hybrid contribution -0.093 -0.241 -0.343 0.430 sum -16.739 1.306 3.306 17.112 Atomic orbital electron populations 1.20132 0.89011 1.02464 1.02020 1.20305 0.97318 0.92264 1.09819 1.24053 0.80350 0.99716 1.04850 1.84090 1.28876 1.21908 1.70513 1.22372 0.96419 0.80214 1.12693 1.16733 0.81646 0.86468 0.78154 1.90782 1.85875 1.12273 1.52824 1.46666 1.05473 1.11109 1.70389 1.19227 0.81917 0.92075 0.94006 0.92955 1.22224 0.99555 1.00362 0.98533 1.20994 1.06555 0.96778 1.32593 0.90220 1.24936 0.94696 0.98329 0.94306 1.69879 1.10378 1.36989 1.35115 0.86895 0.77574 0.85437 0.80038 1.19786 1.21098 1.18393 1.20439 0.90900 0.97181 1.02000 1.20360 1.01447 0.90234 1.02605 0.91525 0.91495 0.91726 0.77860 0.76757 0.95108 0.92673 0.93277 0.92181 0.91171 0.89406 0.92032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 10.23 36.01 0.37 -0.33 16 2 C -0.20 -2.46 6.14 -104.93 -0.64 -3.11 16 3 C -0.02 -0.24 12.00 29.62 0.36 0.11 16 4 O -0.16 -2.49 10.40 5.00 0.05 -2.44 16 5 C -0.06 -1.15 7.13 -36.80 -0.26 -1.41 16 6 C 0.59 12.22 7.75 -12.86 -0.10 12.12 16 7 O -0.54 -12.35 14.40 5.19 0.07 -12.27 16 8 N -0.69 -14.82 5.07 -56.25 -0.28 -15.10 16 9 C 0.23 5.57 2.22 -69.08 -0.15 5.42 16 10 H 0.05 1.36 4.73 -51.93 -0.25 1.12 16 11 C -0.15 -3.28 9.47 37.16 0.35 -2.93 16 12 C -0.53 -14.46 9.05 -34.44 -0.31 -14.77 16 13 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 14 C 0.08 2.30 5.47 -17.82 -0.10 2.21 16 15 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 16 Si 0.87 21.57 26.99 -169.99 -4.59 16.98 16 17 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.26 -6.27 6.82 56.52 0.39 -5.89 16 20 C -0.10 -1.59 6.20 -104.43 -0.65 -2.24 16 21 C -0.09 -1.27 9.66 36.01 0.35 -0.92 16 22 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 23 H 0.07 0.56 7.40 -51.93 -0.38 0.18 16 24 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.20 1.53 8.06 -52.49 -0.42 1.10 16 26 H 0.40 7.88 8.35 -40.82 -0.34 7.54 16 27 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 30 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.09 1.41 6.45 -51.93 -0.33 1.08 16 33 H 0.06 0.69 7.40 -51.93 -0.38 0.31 16 LS Contribution 284.76 15.07 4.29 4.29 Total: -1.00 -31.27 284.76 -4.70 -35.97 By element: Atomic # 1 Polarization: 8.09 SS G_CDS: -4.22 Total: 3.86 kcal Atomic # 6 Polarization: -5.05 SS G_CDS: -0.79 Total: -5.85 kcal Atomic # 7 Polarization: -41.03 SS G_CDS: 0.49 Total: -40.54 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: 0.13 Total: -14.71 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.59 Total: 16.98 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -31.27 -4.70 -35.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346462474.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.321 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds