Wall clock time and date at job start Sun Mar 29 2020 22:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47323 * 204.70002 * 3 2 1 5 5 N 1.46502 * 109.54142 * 304.28669 * 4 3 2 6 6 C 1.34776 * 119.99866 * 299.92804 * 5 4 3 7 7 O 1.21689 * 119.99696 * 4.56407 * 6 5 4 8 8 C 1.46368 * 120.00144 * 184.55609 * 6 5 4 9 9 H 1.08001 * 120.00231 * 352.26182 * 8 6 5 10 10 C 1.40046 * 119.99992 * 172.26076 * 8 6 5 11 11 N 1.30681 * 119.99865 * 166.40103 * 10 8 6 12 12 Si 1.86797 * 120.00235 * 346.40124 * 10 8 6 13 13 H 1.48497 * 109.47034 * 84.91472 * 12 10 8 14 14 H 1.48501 * 109.47245 * 204.91651 * 12 10 8 15 15 H 1.48503 * 109.46778 * 324.91398 * 12 10 8 16 16 C 1.53185 * 109.61460 * 64.49200 * 4 3 2 17 17 C 1.53087 * 109.16306 * 176.88036 * 16 4 3 18 18 O 1.42905 * 109.42679 * 302.41314 * 17 16 4 19 19 C 1.42906 * 114.09941 * 61.14608 * 18 17 16 20 20 C 1.53085 * 109.41661 * 298.84742 * 19 18 17 21 21 H 4.44650 * 5.63369 * 179.97438 * 4 1 2 22 22 H 1.09004 * 109.47072 * 84.70302 * 3 2 1 23 23 H 1.08999 * 109.47411 * 324.70206 * 3 2 1 24 24 H 0.96995 * 119.99956 * 119.93923 * 5 4 3 25 25 H 0.97003 * 119.99629 * 180.02562 * 11 10 8 26 26 H 1.09003 * 109.51162 * 56.98281 * 16 4 3 27 27 H 1.08998 * 109.53272 * 296.79648 * 16 4 3 28 28 H 1.08994 * 109.48337 * 182.42172 * 17 16 4 29 29 H 1.09006 * 109.47988 * 62.39760 * 17 16 4 30 30 H 1.09002 * 109.47666 * 58.82818 * 19 18 17 31 31 H 1.09000 * 109.47640 * 178.85136 * 19 18 17 32 32 H 1.09003 * 109.52388 * 177.51384 * 20 19 18 33 33 H 1.09005 * 109.52652 * 297.70153 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.3114 0.6028 5 7 2.5850 2.4431 -0.1322 6 6 2.8244 2.5793 -1.4515 7 8 3.4442 1.7194 -2.0493 8 6 2.3388 3.7612 -2.1653 9 1 1.6842 4.4615 -1.6677 10 6 2.7230 3.9842 -3.4934 11 7 2.0951 4.8750 -4.2145 12 14 4.1328 3.0081 -4.2344 13 1 3.6216 1.7118 -4.7475 14 1 4.7358 3.7794 -5.3510 15 1 5.1620 2.7574 -3.1935 16 6 2.7410 1.3957 2.0751 17 6 3.3216 2.6725 2.6883 18 8 4.7431 2.6666 2.5411 19 6 5.1891 2.6366 1.1838 20 6 4.6837 1.3581 0.5102 21 1 -1.0502 -0.0002 -0.0003 22 1 3.0094 -0.0941 -1.0233 23 1 3.0098 -0.8379 0.5938 24 1 2.0353 3.0944 0.3307 25 1 2.3610 5.0291 -5.1345 26 1 3.1238 0.5273 2.6113 27 1 1.6536 1.4189 2.1468 28 1 3.0660 2.7162 3.7469 29 1 2.9070 3.5420 2.1780 30 1 4.7988 3.5054 0.6537 31 1 6.2786 2.6546 1.1588 32 1 4.9855 1.3545 -0.5372 33 1 5.1059 0.4891 1.0149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350954673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:19 Heat of formation + Delta-G solvation = -46.923134 kcal Electronic energy + Delta-G solvation = -17648.475628 eV Core-core repulsion = 14868.123925 eV Total energy + Delta-G solvation = -2780.351703 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.97477 -37.41550 -35.24233 -32.81408 -32.50842 -30.91101 -30.72722 -27.94853 -26.43754 -23.42798 -23.03524 -20.76269 -18.62823 -17.56850 -17.50658 -16.01472 -15.71366 -15.62573 -15.01835 -14.50683 -14.37416 -13.81025 -13.37377 -12.72423 -12.62468 -12.37316 -12.32040 -12.23139 -11.76265 -11.69538 -11.05368 -10.95993 -10.53616 -10.39386 -10.21994 -9.80541 -9.63412 -9.57170 -9.22664 -9.01996 -7.90787 -7.75300 -6.65543 -4.85298 3.28892 3.35826 3.43712 3.49603 3.70544 4.11699 4.20441 4.35357 4.57232 4.76325 4.99128 5.10315 5.23196 5.36897 5.45522 5.51851 5.72370 5.85037 5.88147 5.98930 6.09481 6.10400 6.24385 6.37989 6.44838 6.61478 6.64725 7.18815 7.44609 7.71845 7.83113 8.12627 8.29902 8.72279 9.20873 10.07381 10.36167 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.010192 C = 0.008694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.982069 B = 2746.462991 C = 3219.858194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.149 4.149 3 C -0.029 4.029 4 C 0.195 3.805 5 N -0.743 5.743 6 C 0.557 3.443 7 O -0.617 6.617 8 C -0.535 4.535 9 H 0.082 0.918 10 C 0.102 3.898 11 N -0.826 5.826 12 Si 0.973 3.027 13 H -0.279 1.279 14 H -0.325 1.325 15 H -0.266 1.266 16 C -0.156 4.156 17 C 0.063 3.937 18 O -0.389 6.389 19 C 0.064 3.936 20 C -0.163 4.163 21 H 0.210 0.790 22 H 0.116 0.884 23 H 0.077 0.923 24 H 0.387 0.613 25 H 0.282 0.718 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.060 0.940 31 H 0.087 0.913 32 H 0.100 0.900 33 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.585 -5.482 10.951 12.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C -0.149 4.149 3 C -0.067 4.067 4 C 0.107 3.893 5 N -0.395 5.395 6 C 0.366 3.634 7 O -0.510 6.510 8 C -0.570 4.570 9 H 0.100 0.900 10 C -0.116 4.116 11 N -0.455 5.455 12 Si 0.806 3.194 13 H -0.205 1.205 14 H -0.257 1.257 15 H -0.191 1.191 16 C -0.194 4.194 17 C -0.014 4.014 18 O -0.308 6.308 19 C -0.012 4.012 20 C -0.202 4.202 21 H 0.227 0.773 22 H 0.134 0.866 23 H 0.095 0.905 24 H 0.220 0.780 25 H 0.092 0.908 26 H 0.096 0.904 27 H 0.095 0.905 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.070 -5.924 10.585 12.306 hybrid contribution -0.347 -0.026 -0.441 0.562 sum 1.723 -5.950 10.144 11.886 Atomic orbital electron populations 1.24639 0.95724 1.02262 1.03169 1.22968 0.94285 0.98982 0.98663 1.19352 0.85164 0.97274 1.04884 1.19875 0.92450 0.87035 0.89893 1.45755 1.56429 1.27445 1.09850 1.18137 0.78572 0.87049 0.79639 1.90097 1.49472 1.45351 1.66102 1.20686 1.31363 1.07778 0.97196 0.90031 1.25777 0.96383 0.93435 0.96028 1.69600 1.36692 1.30146 1.09042 0.85119 0.80904 0.77600 0.75793 1.20541 1.25716 1.19133 1.22474 1.01696 0.99723 0.95520 1.22505 0.81685 0.96611 1.00584 1.87849 1.21212 1.94985 1.26725 1.22545 0.99012 0.97761 0.81892 1.22579 0.95341 0.98321 1.03960 0.77309 0.86601 0.90453 0.77978 0.90837 0.90352 0.90531 0.89343 0.92899 0.92212 0.89436 0.88115 0.91474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -3.98 19.25 29.55 0.57 -3.41 16 2 C -0.15 -2.68 11.83 -37.12 -0.44 -3.12 16 3 C -0.03 -0.51 4.49 -29.52 -0.13 -0.65 16 4 C 0.20 3.32 0.34 -131.63 -0.05 3.27 16 5 N -0.74 -14.89 3.66 -48.83 -0.18 -15.07 16 6 C 0.56 13.91 6.89 -12.99 -0.09 13.82 16 7 O -0.62 -16.35 8.68 5.20 0.05 -16.30 16 8 C -0.53 -14.78 10.06 -35.64 -0.36 -15.14 16 9 H 0.08 2.29 8.06 -52.49 -0.42 1.87 16 10 C 0.10 2.88 5.52 -17.36 -0.10 2.78 16 11 N -0.83 -23.40 13.92 55.55 0.77 -22.63 16 12 Si 0.97 25.09 25.80 -169.99 -4.39 20.70 16 13 H -0.28 -7.46 7.11 56.52 0.40 -7.06 16 14 H -0.33 -8.06 7.11 56.52 0.40 -7.65 16 15 H -0.27 -6.98 6.75 56.52 0.38 -6.60 16 16 C -0.16 -2.16 4.71 -26.59 -0.13 -2.28 16 17 C 0.06 0.85 6.67 37.20 0.25 1.10 16 18 O -0.39 -6.06 10.77 -35.23 -0.38 -6.44 16 19 C 0.06 1.04 6.68 37.20 0.25 1.29 16 20 C -0.16 -2.76 4.76 -26.60 -0.13 -2.88 16 21 H 0.21 2.69 7.80 -54.08 -0.42 2.27 16 22 H 0.12 2.39 6.17 -51.93 -0.32 2.07 16 23 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 24 H 0.39 7.25 7.51 -40.82 -0.31 6.94 16 25 H 0.28 7.35 8.29 -40.82 -0.34 7.02 16 26 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.08 1.04 7.49 -51.93 -0.39 0.65 16 28 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.05 0.74 7.10 -51.93 -0.37 0.37 16 30 H 0.06 1.08 7.75 -51.93 -0.40 0.67 16 31 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 32 H 0.10 2.01 6.27 -51.93 -0.33 1.69 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 272.14 15.07 4.10 4.10 Total: -1.00 -30.80 272.14 -4.60 -35.39 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.22 Total: 5.45 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -0.35 Total: -5.22 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: 0.59 Total: -37.70 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.33 Total: -22.74 kcal Atomic # 14 Polarization: 25.09 SS G_CDS: -4.39 Total: 20.70 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.80 -4.60 -35.39 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350954673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.530 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds