Wall clock time and date at job start Sun Mar 29 2020 22:20:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47323 * 204.70002 * 3 2 1 5 5 N 1.46502 * 109.54142 * 304.28669 * 4 3 2 6 6 C 1.34776 * 119.99866 * 299.92804 * 5 4 3 7 7 O 1.21689 * 119.99696 * 4.56407 * 6 5 4 8 8 C 1.46368 * 120.00144 * 184.55609 * 6 5 4 9 9 H 1.08001 * 120.00231 * 352.26182 * 8 6 5 10 10 C 1.40046 * 119.99992 * 172.26076 * 8 6 5 11 11 N 1.30681 * 119.99865 * 166.40103 * 10 8 6 12 12 Si 1.86797 * 120.00235 * 346.40124 * 10 8 6 13 13 H 1.48497 * 109.47034 * 84.91472 * 12 10 8 14 14 H 1.48501 * 109.47245 * 204.91651 * 12 10 8 15 15 H 1.48503 * 109.46778 * 324.91398 * 12 10 8 16 16 C 1.53185 * 109.61460 * 64.49200 * 4 3 2 17 17 C 1.53087 * 109.16306 * 176.88036 * 16 4 3 18 18 O 1.42905 * 109.42679 * 302.41314 * 17 16 4 19 19 C 1.42906 * 114.09941 * 61.14608 * 18 17 16 20 20 C 1.53085 * 109.41661 * 298.84742 * 19 18 17 21 21 H 4.44650 * 5.63369 * 179.97438 * 4 1 2 22 22 H 1.09004 * 109.47072 * 84.70302 * 3 2 1 23 23 H 1.08999 * 109.47411 * 324.70206 * 3 2 1 24 24 H 0.96995 * 119.99956 * 119.93923 * 5 4 3 25 25 H 0.97003 * 119.99629 * 180.02562 * 11 10 8 26 26 H 1.09003 * 109.51162 * 56.98281 * 16 4 3 27 27 H 1.08998 * 109.53272 * 296.79648 * 16 4 3 28 28 H 1.08994 * 109.48337 * 182.42172 * 17 16 4 29 29 H 1.09006 * 109.47988 * 62.39760 * 17 16 4 30 30 H 1.09002 * 109.47666 * 58.82818 * 19 18 17 31 31 H 1.09000 * 109.47640 * 178.85136 * 19 18 17 32 32 H 1.09003 * 109.52388 * 177.51384 * 20 19 18 33 33 H 1.09005 * 109.52652 * 297.70153 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1555 1.3114 0.6028 5 7 2.5850 2.4431 -0.1322 6 6 2.8244 2.5793 -1.4515 7 8 3.4442 1.7194 -2.0493 8 6 2.3388 3.7612 -2.1653 9 1 1.6842 4.4615 -1.6677 10 6 2.7230 3.9842 -3.4934 11 7 2.0951 4.8750 -4.2145 12 14 4.1328 3.0081 -4.2344 13 1 3.6216 1.7118 -4.7475 14 1 4.7358 3.7794 -5.3510 15 1 5.1620 2.7574 -3.1935 16 6 2.7410 1.3957 2.0751 17 6 3.3216 2.6725 2.6883 18 8 4.7431 2.6666 2.5411 19 6 5.1891 2.6366 1.1838 20 6 4.6837 1.3581 0.5102 21 1 -1.0502 -0.0002 -0.0003 22 1 3.0094 -0.0941 -1.0233 23 1 3.0098 -0.8379 0.5938 24 1 2.0353 3.0944 0.3307 25 1 2.3610 5.0291 -5.1345 26 1 3.1238 0.5273 2.6113 27 1 1.6536 1.4189 2.1468 28 1 3.0660 2.7162 3.7469 29 1 2.9070 3.5420 2.1780 30 1 4.7988 3.5054 0.6537 31 1 6.2786 2.6546 1.1588 32 1 4.9855 1.3545 -0.5372 33 1 5.1059 0.4891 1.0149 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001350954673.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:20:18 Heat of formation + Delta-G solvation = -68.402148 kcal Electronic energy + Delta-G solvation = -17649.407028 eV Core-core repulsion = 14868.123925 eV Total energy + Delta-G solvation = -2781.283103 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.41109 -39.07345 -36.75589 -34.93705 -33.95147 -32.41144 -32.02508 -29.27382 -28.47024 -24.64292 -24.35855 -22.49317 -20.14266 -19.46078 -18.88800 -17.77065 -17.18610 -16.91550 -16.41456 -16.31719 -15.78495 -15.29763 -14.96499 -14.51165 -14.23295 -13.92810 -13.85620 -13.73695 -13.45056 -13.06311 -12.91936 -12.58384 -12.24242 -11.73928 -11.69127 -11.46314 -11.18642 -11.08115 -10.95326 -10.52097 -9.77487 -9.56387 -8.80690 -7.00689 1.34194 1.39536 1.61339 1.95327 2.02023 2.15109 2.36972 2.85354 2.98483 3.35039 3.51096 3.77267 3.94825 4.00998 4.10106 4.32306 4.47726 4.63444 4.72064 4.78262 4.80878 4.89842 5.05570 5.06351 5.12947 5.20354 5.26737 5.30800 5.70358 6.06854 6.21048 6.25096 6.63908 6.81051 7.30692 8.09373 8.26930 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.023784 B = 0.010192 C = 0.008694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.982069 B = 2746.462991 C = 3219.858194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.190 4.190 3 C -0.027 4.027 4 C 0.188 3.812 5 N -0.730 5.730 6 C 0.564 3.436 7 O -0.631 6.631 8 C -0.559 4.559 9 H 0.067 0.933 10 C 0.069 3.931 11 N -0.852 5.852 12 Si 1.020 2.980 13 H -0.295 1.295 14 H -0.308 1.308 15 H -0.277 1.277 16 C -0.144 4.144 17 C 0.058 3.942 18 O -0.391 6.391 19 C 0.069 3.931 20 C -0.161 4.161 21 H 0.241 0.759 22 H 0.079 0.921 23 H 0.108 0.892 24 H 0.394 0.606 25 H 0.290 0.710 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.121 0.879 29 H 0.044 0.956 30 H 0.034 0.966 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.567 -6.448 12.813 14.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.190 4.190 3 C -0.065 4.065 4 C 0.102 3.898 5 N -0.380 5.380 6 C 0.369 3.631 7 O -0.525 6.525 8 C -0.595 4.595 9 H 0.085 0.915 10 C -0.147 4.147 11 N -0.483 5.483 12 Si 0.852 3.148 13 H -0.222 1.222 14 H -0.238 1.238 15 H -0.203 1.203 16 C -0.182 4.182 17 C -0.019 4.019 18 O -0.310 6.310 19 C -0.008 4.008 20 C -0.199 4.199 21 H 0.257 0.743 22 H 0.098 0.902 23 H 0.126 0.874 24 H 0.228 0.772 25 H 0.100 0.900 26 H 0.118 0.882 27 H 0.102 0.898 28 H 0.139 0.861 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.122 0.878 32 H 0.084 0.916 33 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.046 -6.877 12.471 14.388 hybrid contribution -0.413 0.232 -0.930 1.044 sum 1.633 -6.646 11.541 13.417 Atomic orbital electron populations 1.25487 0.96660 1.00766 1.01412 1.23310 0.94991 1.00476 1.00263 1.19271 0.85351 0.98503 1.03334 1.20175 0.92462 0.85549 0.91657 1.45548 1.55623 1.28414 1.08423 1.17875 0.78017 0.85957 0.81210 1.90097 1.49784 1.45575 1.67052 1.20938 1.31968 1.08816 0.97789 0.91480 1.26304 0.97667 0.94133 0.96583 1.69613 1.37709 1.31169 1.09805 0.84442 0.78954 0.76063 0.75325 1.22212 1.23811 1.20334 1.22413 1.02216 1.00802 0.92772 1.22720 0.80576 0.96070 1.02487 1.87857 1.22452 1.94895 1.25778 1.22454 0.99956 0.96239 0.82130 1.22522 0.95330 0.99872 1.02204 0.74277 0.90233 0.87382 0.77202 0.89965 0.88168 0.89828 0.86103 0.93746 0.94768 0.87825 0.91572 0.88829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -6.95 19.25 74.32 1.43 -5.52 16 2 C -0.19 -6.53 11.83 31.12 0.37 -6.16 16 3 C -0.03 -0.91 4.49 28.79 0.13 -0.78 16 4 C 0.19 6.10 0.34 3.72 0.00 6.10 16 5 N -0.73 -28.91 3.66 -426.61 -1.56 -30.47 16 6 C 0.56 28.42 6.89 86.36 0.60 29.01 16 7 O -0.63 -33.86 8.68 -4.31 -0.04 -33.90 16 8 C -0.56 -31.47 10.06 24.83 0.25 -31.22 16 9 H 0.07 3.87 8.06 -2.91 -0.02 3.85 16 10 C 0.07 3.91 5.52 85.30 0.47 4.38 16 11 N -0.85 -48.80 13.92 21.84 0.30 -48.50 16 12 Si 1.02 52.33 25.80 68.60 1.77 54.10 16 13 H -0.29 -15.76 7.11 99.48 0.71 -15.05 16 14 H -0.31 -14.67 7.11 99.48 0.71 -13.97 16 15 H -0.28 -14.58 6.75 99.48 0.67 -13.91 16 16 C -0.14 -3.52 4.71 30.69 0.14 -3.37 16 17 C 0.06 1.39 6.67 72.01 0.48 1.87 16 18 O -0.39 -11.11 10.77 -148.98 -1.60 -12.72 16 19 C 0.07 2.13 6.68 72.01 0.48 2.61 16 20 C -0.16 -5.21 4.76 30.68 0.15 -5.06 16 21 H 0.24 5.38 7.80 -4.41 -0.03 5.34 16 22 H 0.08 3.29 6.17 -2.38 -0.01 3.27 16 23 H 0.11 2.87 8.14 -2.39 -0.02 2.85 16 24 H 0.39 14.51 7.51 -92.71 -0.70 13.81 16 25 H 0.29 15.20 8.29 -92.71 -0.77 14.44 16 26 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.08 1.97 7.49 -2.39 -0.02 1.95 16 28 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.04 1.14 7.10 -2.38 -0.02 1.13 16 30 H 0.03 1.22 7.75 -2.39 -0.02 1.20 16 31 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 32 H 0.07 2.64 6.27 -2.39 -0.01 2.63 16 33 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 Total: -1.00 -66.33 272.14 3.75 -62.57 By element: Atomic # 1 Polarization: 16.68 SS G_CDS: 0.38 Total: 17.06 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 4.50 Total: -8.15 kcal Atomic # 7 Polarization: -77.71 SS G_CDS: -1.26 Total: -78.97 kcal Atomic # 8 Polarization: -44.98 SS G_CDS: -1.64 Total: -46.62 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 1.77 Total: 54.10 kcal Total: -66.33 3.75 -62.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350954673.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.828 kcal (2) G-P(sol) polarization free energy of solvation -66.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds