Wall clock time and date at job start Sun Mar 29 2020 21:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99585 * 2 1 4 4 H 1.48502 * 109.47280 * 269.99433 * 3 2 1 5 5 H 1.48504 * 109.47571 * 29.99724 * 3 2 1 6 6 H 1.48505 * 109.47085 * 149.99817 * 3 2 1 7 7 C 1.37878 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99801 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00179 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99634 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00056 * 355.11676 * 11 10 9 13 13 C 1.50700 * 120.00101 * 175.12065 * 11 10 9 14 14 C 1.50696 * 115.55311 * 65.71183 * 13 11 10 15 15 O 1.20762 * 120.00178 * 220.30266 * 14 13 11 16 16 C 1.50700 * 119.99897 * 40.30150 * 14 13 11 17 17 C 1.52998 * 117.50259 * 153.68398 * 16 14 13 18 18 C 1.53007 * 117.49875 * 222.30953 * 16 14 13 19 19 C 1.52999 * 117.51892 * 211.41933 * 13 11 10 20 20 C 1.52998 * 60.00188 * 107.47642 * 19 13 11 21 21 H 0.96997 * 120.00363 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47007 * 59.99825 * 9 7 2 23 23 H 1.08997 * 109.46560 * 299.99774 * 9 7 2 24 24 H 0.97000 * 120.00085 * 359.97438 * 10 9 7 25 25 H 1.09003 * 115.56274 * 7.99251 * 16 14 13 26 26 H 1.09004 * 117.49607 * 0.02562 * 17 16 14 27 27 H 1.08998 * 117.50054 * 214.98031 * 17 16 14 28 28 H 1.09003 * 117.49568 * 145.02207 * 18 16 14 29 29 H 1.08996 * 117.51592 * 359.97438 * 18 16 14 30 30 H 1.08996 * 117.49877 * 214.97051 * 19 13 11 31 31 H 1.09001 * 117.49869 * 359.97438 * 19 13 11 32 32 H 1.08999 * 117.49676 * 252.50908 * 20 19 13 33 33 H 1.08995 * 117.51715 * 107.48256 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5652 -5.1062 0.0909 13 6 2.7289 -6.0272 -0.1100 14 6 3.6732 -6.1916 1.0528 15 8 4.8297 -6.4781 0.8557 16 6 3.1744 -5.9985 2.4617 17 6 3.9137 -6.7357 3.5802 18 6 4.0705 -5.2213 3.4281 19 6 2.2511 -7.2971 -0.8170 20 6 3.2577 -6.3718 -1.5037 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 3.1569 -3.4353 0.0002 25 1 2.0963 -5.8764 2.5664 26 1 4.7612 -7.3600 3.2970 27 1 3.3220 -7.0985 4.4206 28 1 3.5819 -4.5879 4.1686 29 1 5.0210 -4.8498 3.0453 30 1 2.6197 -8.2514 -0.4411 31 1 1.2312 -7.3055 -1.2017 32 1 2.9002 -5.7716 -2.3403 33 1 4.2887 -6.7172 -1.5796 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467580884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:54 Heat of formation + Delta-G solvation = -29.664440 kcal Electronic energy + Delta-G solvation = -16631.015373 eV Core-core repulsion = 13851.412063 eV Total energy + Delta-G solvation = -2779.603310 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.52054 -38.68910 -36.48460 -35.52712 -34.23108 -32.34280 -27.89533 -26.56589 -23.64663 -22.51566 -22.38964 -21.93175 -20.49705 -18.86945 -17.70008 -16.33492 -15.70694 -15.52676 -15.28021 -14.72479 -14.60386 -13.94995 -13.87493 -13.62729 -12.93315 -12.56436 -12.00817 -11.85493 -11.62474 -11.60336 -11.07512 -11.04881 -10.91973 -10.72297 -10.55678 -10.50281 -10.27224 -9.68137 -9.43776 -9.13317 -8.77927 -7.96957 -6.20194 -4.27208 1.69757 3.05235 3.22540 3.28851 3.31236 3.51553 3.76883 3.81073 4.09366 4.32878 4.69134 4.80128 4.87458 4.93384 4.98105 5.16265 5.19305 5.29397 5.52529 5.59088 5.73426 5.79447 5.86718 5.97001 6.02334 6.10121 7.22039 7.33080 7.41795 7.45021 7.61869 7.91960 8.53420 8.71262 8.97681 9.39366 10.89975 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025187 B = 0.006559 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.432037 B = 4267.715578 C = 4743.424660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.250 3.750 10 N -0.701 5.701 11 C 0.543 3.457 12 O -0.545 6.545 13 C -0.220 4.220 14 C 0.435 3.565 15 O -0.453 6.453 16 C -0.218 4.218 17 C -0.152 4.152 18 C -0.143 4.143 19 C -0.120 4.120 20 C -0.138 4.138 21 H 0.266 0.734 22 H 0.028 0.972 23 H 0.030 0.970 24 H 0.391 0.609 25 H 0.128 0.872 26 H 0.102 0.898 27 H 0.104 0.896 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.108 0.892 33 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.484 -12.016 2.786 14.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.139 4.139 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.349 5.349 11 C 0.325 3.675 12 O -0.424 6.424 13 C -0.224 4.224 14 C 0.311 3.689 15 O -0.327 6.327 16 C -0.237 4.237 17 C -0.188 4.188 18 C -0.180 4.180 19 C -0.157 4.157 20 C -0.176 4.176 21 H 0.076 0.924 22 H 0.046 0.954 23 H 0.048 0.952 24 H 0.224 0.776 25 H 0.146 0.854 26 H 0.120 0.880 27 H 0.122 0.878 28 H 0.126 0.874 29 H 0.121 0.879 30 H 0.121 0.879 31 H 0.133 0.867 32 H 0.127 0.873 33 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.061 -12.147 2.736 14.314 hybrid contribution 0.632 1.167 -0.001 1.327 sum 7.693 -10.979 2.735 13.682 Atomic orbital electron populations 1.69968 1.06104 1.27375 1.48837 1.24937 0.94908 0.99441 0.94614 0.86416 0.79657 0.82585 0.78286 1.20416 1.20956 1.19707 1.21212 0.93312 0.90359 1.53338 0.91856 1.19165 0.88197 0.81795 0.97883 1.46436 1.11329 1.05729 1.71361 1.18901 0.87634 0.83098 0.77822 1.90671 1.16370 1.84561 1.50754 1.22098 1.03375 1.00864 0.96051 1.22533 0.86632 0.70516 0.89209 1.90354 1.19102 1.35825 1.87393 1.22741 1.00996 1.09569 0.90403 1.22958 1.02160 0.95417 0.98313 1.22962 1.00433 0.94436 1.00153 1.22957 1.01066 0.91708 1.00014 1.23072 1.00307 1.02004 0.92172 0.92400 0.95444 0.95223 0.77598 0.85381 0.87978 0.87794 0.87408 0.87932 0.87909 0.86720 0.87349 0.87077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.73 29.54 -169.99 -5.02 15.70 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.64 9.28 -34.44 -0.32 -14.95 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 9 C 0.25 6.52 5.43 -5.19 -0.03 6.50 16 10 N -0.70 -14.86 5.55 -61.47 -0.34 -15.20 16 11 C 0.54 10.84 6.40 -10.99 -0.07 10.77 16 12 O -0.54 -12.78 16.71 5.55 0.09 -12.69 16 13 C -0.22 -3.44 2.34 -156.81 -0.37 -3.81 16 14 C 0.43 6.57 6.48 -29.04 -0.19 6.39 16 15 O -0.45 -7.29 16.36 6.00 0.10 -7.19 16 16 C -0.22 -3.01 5.71 -91.77 -0.52 -3.54 16 17 C -0.15 -1.67 10.05 -26.73 -0.27 -1.94 16 18 C -0.14 -1.75 10.13 -26.72 -0.27 -2.02 16 19 C -0.12 -1.56 9.76 -26.73 -0.26 -1.82 16 20 C -0.14 -1.83 9.75 -26.73 -0.26 -2.09 16 21 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 22 H 0.03 0.79 8.14 -51.93 -0.42 0.36 16 23 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 24 H 0.39 7.51 8.33 -40.82 -0.34 7.17 16 25 H 0.13 1.89 7.89 -51.93 -0.41 1.48 16 26 H 0.10 1.12 7.91 -51.93 -0.41 0.71 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 31 H 0.11 1.53 8.00 -51.93 -0.42 1.12 16 32 H 0.11 1.41 8.14 -51.93 -0.42 0.99 16 33 H 0.11 1.35 7.68 -51.93 -0.40 0.95 16 LS Contribution 296.25 15.07 4.46 4.46 Total: -1.00 -31.15 296.25 -7.09 -38.24 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -4.47 Total: 6.54 kcal Atomic # 6 Polarization: -2.19 SS G_CDS: -2.66 Total: -4.84 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.40 Total: -40.23 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: 0.19 Total: -19.88 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -31.15 -7.09 -38.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467580884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.580 kcal (2) G-P(sol) polarization free energy of solvation -31.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds