Wall clock time and date at job start Sun Mar 29 2020 21:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 119.99585 * 2 1 4 4 H 1.48502 * 109.47280 * 269.99433 * 3 2 1 5 5 H 1.48504 * 109.47571 * 29.99724 * 3 2 1 6 6 H 1.48505 * 109.47085 * 149.99817 * 3 2 1 7 7 C 1.37878 * 120.00120 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99801 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00179 * 0.02562 * 7 2 1 10 10 N 1.46499 * 109.46880 * 179.97438 * 9 7 2 11 11 C 1.34774 * 119.99634 * 179.97438 * 10 9 7 12 12 O 1.21285 * 120.00056 * 355.11676 * 11 10 9 13 13 C 1.50700 * 120.00101 * 175.12065 * 11 10 9 14 14 C 1.50696 * 115.55311 * 65.71183 * 13 11 10 15 15 O 1.20762 * 120.00178 * 220.30266 * 14 13 11 16 16 C 1.50700 * 119.99897 * 40.30150 * 14 13 11 17 17 C 1.52998 * 117.50259 * 153.68398 * 16 14 13 18 18 C 1.53007 * 117.49875 * 222.30953 * 16 14 13 19 19 C 1.52999 * 117.51892 * 211.41933 * 13 11 10 20 20 C 1.52998 * 60.00188 * 107.47642 * 19 13 11 21 21 H 0.96997 * 120.00363 * 0.02562 * 1 2 3 22 22 H 1.09005 * 109.47007 * 59.99825 * 9 7 2 23 23 H 1.08997 * 109.46560 * 299.99774 * 9 7 2 24 24 H 0.97000 * 120.00085 * 359.97438 * 10 9 7 25 25 H 1.09003 * 115.56274 * 7.99251 * 16 14 13 26 26 H 1.09004 * 117.49607 * 0.02562 * 17 16 14 27 27 H 1.08998 * 117.50054 * 214.98031 * 17 16 14 28 28 H 1.09003 * 117.49568 * 145.02207 * 18 16 14 29 29 H 1.08996 * 117.51592 * 359.97438 * 18 16 14 30 30 H 1.08996 * 117.49877 * 214.97051 * 19 13 11 31 31 H 1.09001 * 117.49869 * 359.97438 * 19 13 11 32 32 H 1.08999 * 117.49676 * 252.50908 * 20 19 13 33 33 H 1.08995 * 117.51715 * 107.48256 * 20 19 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4464 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5652 -5.1062 0.0909 13 6 2.7289 -6.0272 -0.1100 14 6 3.6732 -6.1916 1.0528 15 8 4.8297 -6.4781 0.8557 16 6 3.1744 -5.9985 2.4617 17 6 3.9137 -6.7357 3.5802 18 6 4.0705 -5.2213 3.4281 19 6 2.2511 -7.2971 -0.8170 20 6 3.2577 -6.3718 -1.5037 21 1 -0.4850 0.8400 -0.0004 22 1 0.6248 -2.5571 -0.8897 23 1 0.6242 -2.5567 0.8903 24 1 3.1569 -3.4353 0.0002 25 1 2.0963 -5.8764 2.5664 26 1 4.7612 -7.3600 3.2970 27 1 3.3220 -7.0985 4.4206 28 1 3.5819 -4.5879 4.1686 29 1 5.0210 -4.8498 3.0453 30 1 2.6197 -8.2514 -0.4411 31 1 1.2312 -7.3055 -1.2017 32 1 2.9002 -5.7716 -2.3403 33 1 4.2887 -6.7172 -1.5796 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001467580884.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:51:54 Heat of formation + Delta-G solvation = -50.030714 kcal Electronic energy + Delta-G solvation = -16631.898521 eV Core-core repulsion = 13851.412063 eV Total energy + Delta-G solvation = -2780.486458 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.80134 -40.19808 -37.61302 -36.74301 -36.14759 -34.36633 -29.74747 -27.94607 -25.37749 -23.57716 -23.47385 -23.36447 -21.94517 -20.41371 -19.04450 -18.13550 -17.18865 -16.96198 -16.76447 -16.34295 -15.80601 -15.57982 -15.35623 -14.92355 -14.34041 -14.03140 -13.90141 -13.70470 -12.99990 -12.74165 -12.62679 -12.50222 -12.29295 -12.22232 -11.75130 -11.64007 -11.55448 -11.47271 -10.96135 -10.82939 -10.67721 -9.92064 -8.31180 -6.47579 0.54363 1.42422 1.43945 1.48587 1.55448 2.17268 2.39772 2.48980 2.73897 2.90852 3.03949 3.60689 3.68800 3.72758 3.80674 3.93033 3.97693 4.14406 4.55274 4.61055 4.65491 4.79902 4.87143 4.94218 5.05881 5.07520 5.13462 5.20840 5.41588 5.60252 5.81309 6.23957 6.61040 6.77016 7.18038 7.33060 8.80811 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025187 B = 0.006559 C = 0.005901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.432037 B = 4267.715578 C = 4743.424660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.981 3.019 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.258 1.258 7 C -0.558 4.558 8 H 0.079 0.921 9 C 0.268 3.732 10 N -0.698 5.698 11 C 0.547 3.453 12 O -0.584 6.584 13 C -0.238 4.238 14 C 0.442 3.558 15 O -0.462 6.462 16 C -0.244 4.244 17 C -0.125 4.125 18 C -0.146 4.146 19 C -0.106 4.106 20 C -0.124 4.124 21 H 0.270 0.730 22 H -0.007 1.007 23 H -0.006 1.006 24 H 0.403 0.597 25 H 0.112 0.888 26 H 0.108 0.892 27 H 0.127 0.873 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.657 -12.431 3.058 16.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.804 3.196 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.182 1.182 7 C -0.596 4.596 8 H 0.097 0.903 9 C 0.146 3.854 10 N -0.346 5.346 11 C 0.332 3.668 12 O -0.465 6.465 13 C -0.242 4.242 14 C 0.319 3.681 15 O -0.337 6.337 16 C -0.263 4.263 17 C -0.162 4.162 18 C -0.183 4.183 19 C -0.143 4.143 20 C -0.161 4.161 21 H 0.079 0.921 22 H 0.011 0.989 23 H 0.012 0.988 24 H 0.238 0.762 25 H 0.130 0.870 26 H 0.126 0.874 27 H 0.145 0.855 28 H 0.133 0.867 29 H 0.119 0.881 30 H 0.149 0.851 31 H 0.127 0.873 32 H 0.126 0.874 33 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.269 -12.591 3.005 15.921 hybrid contribution -0.101 1.235 -0.087 1.242 sum 9.168 -11.356 2.918 14.884 Atomic orbital electron populations 1.70117 1.08123 1.28635 1.49771 1.25990 0.95748 1.03653 0.93758 0.85208 0.78508 0.77193 0.78655 1.19573 1.20731 1.18172 1.21570 0.94150 0.90639 1.53194 0.90250 1.18614 0.88446 0.83804 0.94562 1.46183 1.11113 1.05388 1.71909 1.19532 0.87872 0.83502 0.75857 1.90644 1.18597 1.85194 1.52105 1.21965 1.03665 1.00421 0.98189 1.22481 0.86197 0.70086 0.89363 1.90348 1.19093 1.36751 1.87516 1.22719 1.00464 1.12464 0.90659 1.23092 1.01492 0.94491 0.97106 1.23068 0.99848 0.95757 0.99593 1.23129 1.00962 0.91789 0.98405 1.23202 1.01335 1.01256 0.90276 0.92140 0.98934 0.98797 0.76207 0.86985 0.87406 0.85525 0.86663 0.88094 0.85129 0.87315 0.87372 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.25 13.29 21.45 0.28 -54.96 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.98 42.11 29.54 68.60 2.03 44.13 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 7 C -0.56 -30.29 9.28 25.60 0.24 -30.05 16 8 H 0.08 3.96 7.60 -2.91 -0.02 3.94 16 9 C 0.27 14.59 5.43 85.63 0.47 15.05 16 10 N -0.70 -30.24 5.55 -466.78 -2.59 -32.83 16 11 C 0.55 22.27 6.40 87.66 0.56 22.83 16 12 O -0.58 -28.46 16.71 -3.05 -0.05 -28.52 16 13 C -0.24 -7.25 2.34 -53.67 -0.13 -7.38 16 14 C 0.44 12.75 6.48 29.10 0.19 12.94 16 15 O -0.46 -13.90 16.36 -1.46 -0.02 -13.92 16 16 C -0.24 -6.52 5.71 -11.54 -0.07 -6.58 16 17 C -0.13 -2.46 10.05 30.60 0.31 -2.16 16 18 C -0.15 -3.35 10.13 30.60 0.31 -3.04 16 19 C -0.11 -2.56 9.76 30.59 0.30 -2.26 16 20 C -0.12 -3.03 9.75 30.59 0.30 -2.73 16 21 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 22 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 23 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 24 H 0.40 15.47 8.33 -92.71 -0.77 14.70 16 25 H 0.11 3.34 7.89 -2.39 -0.02 3.32 16 26 H 0.11 2.04 7.91 -2.39 -0.02 2.03 16 27 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 29 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.11 2.80 8.00 -2.39 -0.02 2.78 16 32 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 33 H 0.13 2.75 7.68 -2.39 -0.02 2.73 16 Total: -1.00 -68.31 296.25 2.93 -65.38 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.35 Total: 23.16 kcal Atomic # 6 Polarization: -5.38 SS G_CDS: 2.94 Total: -2.44 kcal Atomic # 7 Polarization: -85.48 SS G_CDS: -2.30 Total: -87.79 kcal Atomic # 8 Polarization: -42.36 SS G_CDS: -0.07 Total: -42.43 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Total: -68.31 2.93 -65.38 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467580884.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.345 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds