Wall clock time and date at job start Sun Mar 29 2020 21:57:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 120.00364 * 2 1 4 4 H 1.48505 * 109.46797 * 275.13879 * 3 2 1 5 5 H 1.48504 * 109.47216 * 35.13599 * 3 2 1 6 6 H 1.48506 * 109.47343 * 155.13863 * 3 2 1 7 7 C 1.38952 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00392 * 340.33616 * 7 2 1 9 9 N 1.37101 * 120.00062 * 160.33782 * 7 2 1 10 10 C 1.34778 * 119.99888 * 316.02162 * 9 7 2 11 11 O 1.21290 * 120.00103 * 3.78925 * 10 9 7 12 12 C 1.50702 * 120.00081 * 183.79395 * 10 9 7 13 13 H 1.09000 * 109.73586 * 308.05096 * 12 10 9 14 14 C 1.53503 * 109.70836 * 68.64935 * 12 10 9 15 15 C 1.53250 * 108.15999 * 182.08632 * 14 12 10 16 16 C 1.50448 * 109.44492 * 313.17547 * 15 14 12 17 17 C 1.30694 * 122.48506 * 17.48241 * 16 15 14 18 18 O 1.35137 * 123.34987 * 359.56771 * 17 16 15 19 19 C 1.46494 * 120.00297 * 136.01729 * 9 7 2 20 20 C 1.53002 * 117.49708 * 3.32680 * 19 9 7 21 21 C 1.53000 * 117.50227 * 294.66759 * 19 9 7 22 22 H 0.96999 * 119.99646 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.72211 * 62.42336 * 14 12 10 24 24 H 1.08996 * 109.76486 * 301.77560 * 14 12 10 25 25 H 1.09004 * 109.47421 * 73.16788 * 15 14 12 26 26 H 1.08999 * 109.48079 * 193.17944 * 15 14 12 27 27 H 1.08000 * 118.75458 * 197.48119 * 16 15 14 28 28 H 1.08009 * 118.32308 * 179.56191 * 17 16 15 29 29 H 1.08999 * 115.55396 * 148.99893 * 19 9 7 30 30 H 1.08993 * 117.50232 * 0.02562 * 20 19 9 31 31 H 1.09006 * 117.49702 * 145.01963 * 20 19 9 32 32 H 1.08998 * 117.50590 * 214.97985 * 21 19 9 33 33 H 1.09004 * 117.49423 * 359.97357 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3871 2.1090 -1.3945 5 1 1.5042 2.6189 0.8058 6 1 3.5959 1.4112 0.5886 7 6 2.0088 -1.2034 0.0005 8 1 1.5160 -2.1113 0.3157 9 7 3.3198 -1.2383 -0.3989 10 6 3.7069 -0.5645 -1.5002 11 8 2.9109 0.1279 -2.0985 12 6 5.1287 -0.6714 -1.9881 13 1 5.8159 -0.4561 -1.1698 14 6 5.3875 -2.0870 -2.5224 15 6 6.8540 -2.1719 -2.9594 16 6 7.2003 -0.9649 -3.7880 17 6 6.4714 0.1199 -3.7870 18 8 5.3435 0.2564 -3.0553 19 6 4.3000 -2.0078 0.3711 20 6 3.7849 -2.8135 1.5655 21 6 4.6032 -1.5406 1.7962 22 1 -0.4849 0.8401 -0.0004 23 1 4.7376 -2.2828 -3.3753 24 1 5.1947 -2.8182 -1.7375 25 1 7.4945 -2.2036 -2.0780 26 1 7.0052 -3.0746 -3.5513 27 1 8.0848 -0.9961 -4.4071 28 1 6.7866 0.9497 -4.4024 29 1 5.1224 -2.4319 -0.2050 30 1 2.7168 -2.7714 1.7780 31 1 4.2687 -3.7676 1.7753 32 1 5.6248 -1.6576 2.1577 33 1 4.0736 -0.6603 2.1605 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001544033061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:52 Heat of formation + Delta-G solvation = -7.037552 kcal Electronic energy + Delta-G solvation = -17684.995438 eV Core-core repulsion = 14906.373304 eV Total energy + Delta-G solvation = -2778.622134 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.25951 -38.52785 -36.37565 -33.78733 -32.94245 -31.87608 -30.95741 -26.54370 -24.30593 -23.59813 -21.96973 -21.46868 -19.77356 -18.51103 -17.52965 -16.47916 -16.26377 -15.84487 -14.96687 -14.51186 -14.10375 -14.07036 -13.59322 -13.15460 -12.91653 -12.75472 -12.49469 -12.39845 -11.74607 -11.22576 -10.95445 -10.76471 -10.71417 -10.47929 -10.31865 -10.06476 -9.90865 -9.67618 -8.56618 -8.47600 -8.21992 -7.52147 -6.22425 -4.02045 2.43039 3.21568 3.46457 3.48340 3.67022 3.72807 4.44047 4.46016 4.59735 4.85278 4.91983 5.08997 5.18907 5.29827 5.35274 5.45538 5.51922 5.58776 5.70170 5.71844 5.80970 5.95116 6.13085 6.20436 6.28528 6.40415 6.63865 6.66016 6.82622 7.75192 7.80479 7.99483 8.71360 8.85213 9.38080 9.74128 10.82042 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025415 B = 0.011163 C = 0.008871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.467617 B = 2507.582117 C = 3155.709184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.862 5.862 2 C 0.095 3.905 3 Si 0.905 3.095 4 H -0.252 1.252 5 H -0.307 1.307 6 H -0.279 1.279 7 C -0.350 4.350 8 H 0.099 0.901 9 N -0.431 5.431 10 C 0.461 3.539 11 O -0.520 6.520 12 C 0.077 3.923 13 H 0.083 0.917 14 C -0.152 4.152 15 C -0.077 4.077 16 C -0.298 4.298 17 C 0.062 3.938 18 O -0.296 6.296 19 C 0.049 3.951 20 C -0.169 4.169 21 C -0.199 4.199 22 H 0.273 0.727 23 H 0.081 0.919 24 H 0.091 0.909 25 H 0.068 0.932 26 H 0.075 0.925 27 H 0.117 0.883 28 H 0.155 0.845 29 H 0.116 0.884 30 H 0.112 0.888 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.383 -4.191 -1.390 15.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.115 4.115 3 Si 0.735 3.265 4 H -0.178 1.178 5 H -0.236 1.236 6 H -0.205 1.205 7 C -0.476 4.476 8 H 0.116 0.884 9 N -0.153 5.153 10 C 0.249 3.751 11 O -0.399 6.399 12 C 0.017 3.983 13 H 0.101 0.899 14 C -0.190 4.190 15 C -0.114 4.114 16 C -0.317 4.317 17 C -0.001 4.001 18 O -0.208 6.208 19 C -0.056 4.056 20 C -0.207 4.207 21 C -0.238 4.238 22 H 0.083 0.917 23 H 0.099 0.901 24 H 0.109 0.891 25 H 0.086 0.914 26 H 0.093 0.907 27 H 0.135 0.865 28 H 0.172 0.828 29 H 0.133 0.867 30 H 0.130 0.870 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 13.602 -3.606 -1.734 14.178 hybrid contribution 0.706 0.623 0.114 0.948 sum 14.308 -2.984 -1.620 14.705 Atomic orbital electron populations 1.69741 1.06801 1.28299 1.44749 1.25323 0.94919 0.99428 0.91838 0.86452 0.79077 0.82327 0.78611 1.17755 1.23598 1.20482 1.18724 0.83468 0.96074 1.49299 0.88382 1.42955 1.07656 1.44531 1.20144 1.19764 0.88011 0.85341 0.81969 1.90571 1.53324 1.39436 1.56611 1.22356 0.97627 0.89432 0.88840 0.89929 1.22328 0.97477 0.96216 1.02984 1.20332 0.95298 0.96849 0.98928 1.22434 1.04527 0.96096 1.08675 1.22136 0.86368 0.97596 0.94034 1.86051 1.38286 1.53116 1.43343 1.22150 0.95477 1.00487 0.87506 1.23133 1.02006 0.94129 1.01402 1.23297 1.00087 0.99549 1.00832 0.91700 0.90054 0.89115 0.91363 0.90667 0.86466 0.82756 0.86656 0.86954 0.89374 0.89449 0.88475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -26.41 13.96 55.50 0.77 -25.64 16 2 C 0.09 2.81 4.84 -17.47 -0.08 2.73 16 3 Si 0.91 24.79 24.86 -169.99 -4.23 20.56 16 4 H -0.25 -7.37 6.32 56.52 0.36 -7.01 16 5 H -0.31 -8.16 7.11 56.52 0.40 -7.76 16 6 H -0.28 -7.34 7.11 56.52 0.40 -6.94 16 7 C -0.35 -9.77 8.58 -14.93 -0.13 -9.89 16 8 H 0.10 2.82 7.13 -52.48 -0.37 2.45 16 9 N -0.43 -10.34 2.46 -107.73 -0.27 -10.60 16 10 C 0.46 11.39 5.44 -10.98 -0.06 11.33 16 11 O -0.52 -15.22 11.93 -14.10 -0.17 -15.39 16 12 C 0.08 1.50 2.43 -27.62 -0.07 1.43 16 13 H 0.08 1.46 7.77 -51.93 -0.40 1.06 16 14 C -0.15 -2.38 5.19 -26.34 -0.14 -2.52 16 15 C -0.08 -0.96 6.23 -27.88 -0.17 -1.13 16 16 C -0.30 -3.85 9.97 -36.06 -0.36 -4.21 16 17 C 0.06 0.93 10.88 29.10 0.32 1.25 16 18 O -0.30 -5.92 9.60 -36.76 -0.35 -6.27 16 19 C 0.05 0.90 5.39 -67.93 -0.37 0.54 16 20 C -0.17 -2.82 9.81 -26.69 -0.26 -3.08 16 21 C -0.20 -3.36 10.36 -26.69 -0.28 -3.64 16 22 H 0.27 7.91 8.31 -40.82 -0.34 7.57 16 23 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 24 H 0.09 1.30 5.44 -51.93 -0.28 1.02 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 29 H 0.12 1.75 4.84 -51.93 -0.25 1.50 16 30 H 0.11 2.15 6.56 -51.93 -0.34 1.81 16 31 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.10 1.89 8.14 -51.93 -0.42 1.47 16 LS Contribution 267.49 15.07 4.03 4.03 Total: -1.00 -33.95 267.49 -6.02 -39.97 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -4.21 Total: 0.55 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -1.60 Total: -7.20 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.51 Total: -36.24 kcal Atomic # 8 Polarization: -21.14 SS G_CDS: -0.52 Total: -21.66 kcal Atomic # 14 Polarization: 24.79 SS G_CDS: -4.23 Total: 20.56 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -33.95 -6.02 -39.97 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544033061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.928 kcal (2) G-P(sol) polarization free energy of solvation -33.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds