Wall clock time and date at job start Sun Mar 29 2020 21:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31408 * 1 3 3 Si 1.86801 * 120.00364 * 2 1 4 4 H 1.48505 * 109.46797 * 275.13879 * 3 2 1 5 5 H 1.48504 * 109.47216 * 35.13599 * 3 2 1 6 6 H 1.48506 * 109.47343 * 155.13863 * 3 2 1 7 7 C 1.38952 * 119.99697 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00392 * 340.33616 * 7 2 1 9 9 N 1.37101 * 120.00062 * 160.33782 * 7 2 1 10 10 C 1.34778 * 119.99888 * 316.02162 * 9 7 2 11 11 O 1.21290 * 120.00103 * 3.78925 * 10 9 7 12 12 C 1.50702 * 120.00081 * 183.79395 * 10 9 7 13 13 H 1.09000 * 109.73586 * 308.05096 * 12 10 9 14 14 C 1.53503 * 109.70836 * 68.64935 * 12 10 9 15 15 C 1.53250 * 108.15999 * 182.08632 * 14 12 10 16 16 C 1.50448 * 109.44492 * 313.17547 * 15 14 12 17 17 C 1.30694 * 122.48506 * 17.48241 * 16 15 14 18 18 O 1.35137 * 123.34987 * 359.56771 * 17 16 15 19 19 C 1.46494 * 120.00297 * 136.01729 * 9 7 2 20 20 C 1.53002 * 117.49708 * 3.32680 * 19 9 7 21 21 C 1.53000 * 117.50227 * 294.66759 * 19 9 7 22 22 H 0.96999 * 119.99646 * 0.02562 * 1 2 3 23 23 H 1.09005 * 109.72211 * 62.42336 * 14 12 10 24 24 H 1.08996 * 109.76486 * 301.77560 * 14 12 10 25 25 H 1.09004 * 109.47421 * 73.16788 * 15 14 12 26 26 H 1.08999 * 109.48079 * 193.17944 * 15 14 12 27 27 H 1.08000 * 118.75458 * 197.48119 * 16 15 14 28 28 H 1.08009 * 118.32308 * 179.56191 * 17 16 15 29 29 H 1.08999 * 115.55396 * 148.99893 * 19 9 7 30 30 H 1.08993 * 117.50232 * 0.02562 * 20 19 9 31 31 H 1.09006 * 117.49702 * 145.01963 * 20 19 9 32 32 H 1.08998 * 117.50590 * 214.97985 * 21 19 9 33 33 H 1.09004 * 117.49423 * 359.97357 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3871 2.1090 -1.3945 5 1 1.5042 2.6189 0.8058 6 1 3.5959 1.4112 0.5886 7 6 2.0088 -1.2034 0.0005 8 1 1.5160 -2.1113 0.3157 9 7 3.3198 -1.2383 -0.3989 10 6 3.7069 -0.5645 -1.5002 11 8 2.9109 0.1279 -2.0985 12 6 5.1287 -0.6714 -1.9881 13 1 5.8159 -0.4561 -1.1698 14 6 5.3875 -2.0870 -2.5224 15 6 6.8540 -2.1719 -2.9594 16 6 7.2003 -0.9649 -3.7880 17 6 6.4714 0.1199 -3.7870 18 8 5.3435 0.2564 -3.0553 19 6 4.3000 -2.0078 0.3711 20 6 3.7849 -2.8135 1.5655 21 6 4.6032 -1.5406 1.7962 22 1 -0.4849 0.8401 -0.0004 23 1 4.7376 -2.2828 -3.3753 24 1 5.1947 -2.8182 -1.7375 25 1 7.4945 -2.2036 -2.0780 26 1 7.0052 -3.0746 -3.5513 27 1 8.0848 -0.9961 -4.4071 28 1 6.7866 0.9497 -4.4024 29 1 5.1224 -2.4319 -0.2050 30 1 2.7168 -2.7714 1.7780 31 1 4.2687 -3.7676 1.7753 32 1 5.6248 -1.6576 2.1577 33 1 4.0736 -0.6603 2.1605 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001544033061.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:51 Heat of formation + Delta-G solvation = -30.300674 kcal Electronic energy + Delta-G solvation = -17686.004203 eV Core-core repulsion = 14906.373304 eV Total energy + Delta-G solvation = -2779.630899 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.75100 -40.11963 -38.06146 -34.98308 -34.96391 -33.59955 -32.49253 -28.12446 -26.06346 -24.79195 -23.40984 -22.96766 -21.54028 -19.79321 -19.31968 -18.12580 -17.65264 -17.39674 -16.69200 -16.05793 -15.69848 -15.60919 -15.07283 -14.93837 -14.57871 -14.33169 -13.88493 -13.75369 -13.47972 -13.03482 -12.50497 -12.27681 -12.19802 -12.10180 -11.89677 -11.71352 -11.43633 -11.18312 -10.83132 -10.35388 -9.44666 -9.33073 -8.49148 -6.24905 1.11500 1.26659 1.38893 1.44783 1.76828 2.01470 2.36157 2.86264 2.97298 3.16850 3.55953 3.64805 3.88297 3.98523 4.08260 4.13078 4.22421 4.27827 4.46070 4.74864 4.76980 4.88941 4.89209 5.00842 5.14638 5.21841 5.35913 5.46747 5.63933 5.67209 5.82478 6.56781 6.73743 6.83085 7.24676 7.76545 8.58828 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.025415 B = 0.011163 C = 0.008871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.467617 B = 2507.582117 C = 3155.709184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.049 3.951 3 Si 0.951 3.049 4 H -0.286 1.286 5 H -0.300 1.300 6 H -0.263 1.263 7 C -0.338 4.338 8 H 0.080 0.920 9 N -0.442 5.442 10 C 0.449 3.551 11 O -0.579 6.579 12 C 0.084 3.916 13 H 0.105 0.895 14 C -0.147 4.147 15 C -0.077 4.077 16 C -0.272 4.272 17 C 0.021 3.979 18 O -0.338 6.338 19 C 0.026 3.974 20 C -0.161 4.161 21 C -0.188 4.188 22 H 0.273 0.727 23 H 0.058 0.942 24 H 0.106 0.894 25 H 0.096 0.904 26 H 0.101 0.899 27 H 0.150 0.850 28 H 0.177 0.823 29 H 0.157 0.843 30 H 0.077 0.923 31 H 0.134 0.866 32 H 0.135 0.865 33 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.585 -5.940 -1.064 19.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.156 4.156 3 Si 0.782 3.218 4 H -0.214 1.214 5 H -0.228 1.228 6 H -0.188 1.188 7 C -0.465 4.465 8 H 0.098 0.902 9 N -0.164 5.164 10 C 0.239 3.761 11 O -0.463 6.463 12 C 0.024 3.976 13 H 0.123 0.877 14 C -0.184 4.184 15 C -0.113 4.113 16 C -0.291 4.291 17 C -0.041 4.041 18 O -0.252 6.252 19 C -0.077 4.077 20 C -0.198 4.198 21 C -0.226 4.226 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.124 0.876 25 H 0.115 0.885 26 H 0.120 0.880 27 H 0.168 0.832 28 H 0.194 0.806 29 H 0.174 0.826 30 H 0.096 0.904 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 17.854 -5.386 -1.367 18.698 hybrid contribution -0.520 1.033 -0.056 1.158 sum 17.334 -4.353 -1.422 17.928 Atomic orbital electron populations 1.69814 1.07797 1.28652 1.47910 1.25894 0.95383 1.01759 0.92596 0.85696 0.79168 0.80366 0.76586 1.21357 1.22849 1.18787 1.18671 0.85724 0.94866 1.47254 0.90249 1.43135 1.07432 1.44891 1.20919 1.20863 0.90268 0.83660 0.81310 1.90525 1.55655 1.41882 1.58256 1.22217 0.93575 0.91829 0.89947 0.87714 1.22330 0.99728 0.93901 1.02489 1.20481 0.92839 0.97603 1.00417 1.22869 1.04185 0.94961 1.07091 1.22620 0.86175 0.99920 0.95342 1.85994 1.41089 1.53930 1.44232 1.22591 0.95654 1.01206 0.88259 1.23192 1.00596 0.96279 0.99730 1.23372 1.02207 0.98287 0.98741 0.91757 0.92333 0.87594 0.88537 0.88035 0.83234 0.80614 0.82562 0.90404 0.84758 0.84690 0.91714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -58.02 13.96 21.66 0.30 -57.72 16 2 C 0.05 2.99 4.84 84.93 0.41 3.40 16 3 Si 0.95 53.19 24.86 68.60 1.71 54.89 16 4 H -0.29 -17.49 6.32 99.48 0.63 -16.87 16 5 H -0.30 -16.02 7.11 99.48 0.71 -15.32 16 6 H -0.26 -13.70 7.11 99.48 0.71 -12.99 16 7 C -0.34 -19.41 8.58 84.04 0.72 -18.69 16 8 H 0.08 4.76 7.13 -2.91 -0.02 4.74 16 9 N -0.44 -21.12 2.46 -613.13 -1.51 -22.63 16 10 C 0.45 22.29 5.44 87.66 0.48 22.77 16 11 O -0.58 -35.25 11.93 15.73 0.19 -35.06 16 12 C 0.08 3.10 2.43 30.02 0.07 3.18 16 13 H 0.11 3.35 7.77 -2.39 -0.02 3.33 16 14 C -0.15 -4.12 5.19 30.85 0.16 -3.96 16 15 C -0.08 -1.49 6.23 29.85 0.19 -1.30 16 16 C -0.27 -5.78 9.97 25.88 0.26 -5.52 16 17 C 0.02 0.58 10.88 68.09 0.74 1.32 16 18 O -0.34 -13.35 9.60 -65.35 -0.63 -13.97 16 19 C 0.03 0.89 5.39 44.99 0.24 1.13 16 20 C -0.16 -4.89 9.81 30.62 0.30 -4.59 16 21 C -0.19 -5.69 10.36 30.62 0.32 -5.37 16 22 H 0.27 16.62 8.31 -92.71 -0.77 15.85 16 23 H 0.06 1.90 8.14 -2.38 -0.02 1.89 16 24 H 0.11 2.58 5.44 -2.39 -0.01 2.57 16 25 H 0.10 1.45 8.14 -2.38 -0.02 1.43 16 26 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 28 H 0.18 3.78 8.06 -2.91 -0.02 3.76 16 29 H 0.16 3.95 4.84 -2.39 -0.01 3.94 16 30 H 0.08 2.95 6.56 -2.39 -0.02 2.94 16 31 H 0.13 2.86 8.14 -2.38 -0.02 2.84 16 32 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 33 H 0.06 2.41 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -80.03 267.49 4.97 -75.05 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: 1.03 Total: 7.07 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: 3.89 Total: -7.64 kcal Atomic # 7 Polarization: -79.14 SS G_CDS: -1.21 Total: -80.35 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -0.44 Total: -49.03 kcal Atomic # 14 Polarization: 53.19 SS G_CDS: 1.71 Total: 54.89 kcal Total: -80.03 4.97 -75.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001544033061.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.753 kcal (2) G-P(sol) polarization free energy of solvation -80.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds