Wall clock time and date at job start Sun Mar 29 2020 21:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86804 * 120.00197 * 2 1 4 4 H 1.48499 * 109.46943 * 270.00030 * 3 2 1 5 5 H 1.48499 * 109.47118 * 30.00258 * 3 2 1 6 6 H 1.48506 * 109.47074 * 149.99944 * 3 2 1 7 7 C 1.37880 * 119.99965 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00054 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99911 * 0.02562 * 7 2 1 10 10 O 1.42905 * 113.28592 * 46.92247 * 9 7 2 11 11 C 1.53494 * 114.20861 * 179.97438 * 9 7 2 12 12 N 1.47060 * 87.98963 * 139.84794 * 11 9 7 13 13 C 1.34784 * 136.05955 * 152.84365 * 12 11 9 14 14 O 1.21283 * 119.99649 * 359.97438 * 13 12 11 15 15 C 1.50697 * 119.99774 * 179.72672 * 13 12 11 16 16 H 1.09002 * 115.55253 * 325.66408 * 15 13 12 17 17 C 1.53000 * 117.50042 * 111.38070 * 15 13 12 18 18 C 1.52994 * 60.00204 * 107.48557 * 17 15 13 19 19 C 1.52991 * 138.59294 * 130.89303 * 18 17 15 20 20 C 1.52996 * 138.59052 * 229.11615 * 18 17 15 21 21 C 1.47066 * 87.88562 * 333.10199 * 12 11 9 22 22 H 0.97005 * 119.99732 * 359.97438 * 1 2 3 23 23 H 0.96699 * 114.00114 * 313.07408 * 10 9 7 24 24 H 1.08995 * 113.47010 * 25.06116 * 11 9 7 25 25 H 1.09008 * 113.46492 * 254.62965 * 11 9 7 26 26 H 1.09002 * 117.49793 * 214.97395 * 17 15 13 27 27 H 1.08998 * 117.49703 * 359.97438 * 17 15 13 28 28 H 1.09009 * 117.49822 * 238.38670 * 19 18 17 29 29 H 1.08996 * 117.49705 * 23.40004 * 19 18 17 30 30 H 1.08999 * 117.49605 * 336.58197 * 20 18 17 31 31 H 1.08991 * 117.50404 * 121.61248 * 20 18 17 32 32 H 1.08993 * 113.47056 * 141.68198 * 21 12 11 33 33 H 1.09001 * 113.46576 * 272.11923 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4991 0.0005 10 8 0.1925 -2.5403 -0.9587 11 6 2.1487 -3.7442 0.0005 12 7 1.2073 -4.3593 0.9482 13 6 0.8310 -5.6139 1.2662 14 8 1.3261 -6.5597 0.6906 15 6 -0.2007 -5.8416 2.3408 16 1 -0.1795 -5.1347 3.1702 17 6 -1.5648 -6.3821 1.9073 18 6 -0.5854 -7.2886 2.6555 19 6 -0.5889 -8.2404 3.8533 20 6 0.0129 -8.6902 2.5205 21 6 0.8523 -3.0028 1.3918 22 1 -0.4850 0.8401 0.0004 23 1 -0.3711 -1.7545 -0.9564 24 1 3.1372 -3.5667 0.4240 25 1 2.1875 -4.2513 -0.9636 26 1 -2.4415 -6.0307 2.4515 27 1 -1.7161 -6.5726 0.8448 28 1 0.1006 -8.0246 4.6696 29 1 -1.5438 -8.6762 4.1470 30 1 -0.5461 -9.4220 1.9374 31 1 1.0982 -8.7705 2.4599 32 1 -0.2089 -2.8808 1.6084 33 1 1.4920 -2.6258 2.1898 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634380468.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:48:59 Heat of formation + Delta-G solvation = 14.487215 kcal Electronic energy + Delta-G solvation = -16741.171713 eV Core-core repulsion = 13963.482962 eV Total energy + Delta-G solvation = -2777.688750 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.73792 -38.30957 -36.57091 -33.98098 -32.45062 -32.19241 -28.75938 -25.67844 -25.09673 -23.06425 -22.32669 -20.28224 -19.16094 -17.97559 -17.42778 -16.34290 -15.48991 -15.04545 -14.95910 -14.82815 -14.32122 -14.12981 -13.18624 -12.94037 -12.62619 -12.06882 -11.91092 -11.56042 -11.52566 -11.39371 -11.08145 -10.99739 -10.48654 -10.26077 -10.07913 -9.95352 -9.87809 -9.56730 -9.12617 -8.76823 -8.38395 -7.82064 -6.41105 -4.51511 3.00304 3.14178 3.22022 3.24399 3.40922 3.89336 3.99788 4.17605 4.43342 4.80897 4.91601 4.97312 5.29544 5.52679 5.59958 5.63661 5.72145 5.74586 5.81964 5.95504 5.98607 6.10605 6.22139 6.24342 6.42087 6.52471 6.67616 6.71365 7.11432 7.62212 7.80439 8.50916 8.55834 8.83130 9.20039 9.49302 10.65597 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.051369 B = 0.005533 C = 0.005402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 544.945213 B = 5059.020731 C = 5181.564299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.909 3.091 4 H -0.276 1.276 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.533 4.533 8 H 0.073 0.927 9 C 0.240 3.760 10 O -0.572 6.572 11 C 0.107 3.893 12 N -0.632 5.632 13 C 0.562 3.438 14 O -0.559 6.559 15 C -0.128 4.128 16 H 0.119 0.881 17 C -0.099 4.099 18 C -0.203 4.203 19 C -0.132 4.132 20 C -0.114 4.114 21 C 0.072 3.928 22 H 0.274 0.726 23 H 0.394 0.606 24 H 0.084 0.916 25 H 0.065 0.935 26 H 0.104 0.896 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.098 0.902 32 H 0.065 0.935 33 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.303 -7.256 6.445 9.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.130 4.130 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.195 1.195 7 C -0.571 4.571 8 H 0.091 0.909 9 C 0.198 3.802 10 O -0.385 6.385 11 C -0.015 4.015 12 N -0.365 5.365 13 C 0.351 3.649 14 O -0.439 6.439 15 C -0.149 4.149 16 H 0.137 0.863 17 C -0.136 4.136 18 C -0.203 4.203 19 C -0.169 4.169 20 C -0.151 4.151 21 C -0.051 4.051 22 H 0.084 0.916 23 H 0.250 0.750 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.122 0.878 27 H 0.119 0.881 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.112 0.888 31 H 0.116 0.884 32 H 0.083 0.917 33 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.009 -8.402 6.060 10.552 hybrid contribution 0.143 1.593 0.320 1.631 sum -1.866 -6.809 6.380 9.516 Atomic orbital electron populations 1.69268 1.06216 1.28198 1.50227 1.25080 0.95021 0.99927 0.93008 0.86310 0.79743 0.81849 0.78504 1.20217 1.20898 1.19528 1.21437 0.93929 0.89765 1.52020 0.90934 1.19494 0.85425 0.91017 0.84277 1.86047 1.45174 1.48350 1.58917 1.23326 0.93767 0.92183 0.92266 1.49636 1.41926 1.04671 1.40258 1.19059 0.82236 0.80954 0.82635 1.90619 1.57642 1.40963 1.54721 1.21872 0.97371 0.95608 1.00036 0.86307 1.22623 0.91486 0.98939 1.00584 1.21165 1.05311 0.89377 1.04461 1.22731 1.02356 1.00450 0.91362 1.22545 1.00698 0.93613 0.98211 1.24145 1.00461 0.77916 1.02562 0.91574 0.74996 0.89765 0.91622 0.87816 0.88115 0.88756 0.88560 0.88753 0.88352 0.91675 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.64 11.01 55.43 0.61 -22.03 16 2 C 0.07 1.78 5.39 -17.82 -0.10 1.68 16 3 Si 0.91 19.26 29.54 -169.99 -5.02 14.24 16 4 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 5 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 6 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 7 C -0.53 -13.33 8.70 -34.44 -0.30 -13.63 16 8 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.24 5.80 1.57 -91.39 -0.14 5.65 16 10 O -0.57 -14.89 13.53 -35.23 -0.48 -15.37 16 11 C 0.11 2.39 8.03 -8.52 -0.07 2.32 16 12 N -0.63 -13.80 3.69 -185.39 -0.68 -14.49 16 13 C 0.56 11.93 7.86 -10.98 -0.09 11.84 16 14 O -0.56 -13.28 17.02 5.56 0.09 -13.19 16 15 C -0.13 -2.17 6.02 -91.77 -0.55 -2.73 16 16 H 0.12 1.84 8.14 -51.93 -0.42 1.42 16 17 C -0.10 -1.46 10.23 -26.73 -0.27 -1.74 16 18 C -0.20 -3.01 5.05 -154.52 -0.78 -3.79 16 19 C -0.13 -1.53 10.53 -26.73 -0.28 -1.81 16 20 C -0.11 -1.55 10.16 -26.73 -0.27 -1.82 16 21 C 0.07 1.57 7.83 -8.65 -0.07 1.50 16 22 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 23 H 0.39 10.29 6.32 45.56 0.29 10.58 16 24 H 0.08 1.72 8.10 -51.93 -0.42 1.30 16 25 H 0.07 1.50 8.14 -51.92 -0.42 1.08 16 26 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 27 H 0.10 1.58 8.14 -51.93 -0.42 1.15 16 28 H 0.09 1.01 8.14 -51.92 -0.42 0.58 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.06 1.41 8.14 -51.93 -0.42 0.98 16 33 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 LS Contribution 289.42 15.07 4.36 4.36 Total: -1.00 -28.43 289.42 -7.94 -36.37 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -3.90 Total: 12.61 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -2.92 Total: -2.51 kcal Atomic # 7 Polarization: -36.44 SS G_CDS: -0.07 Total: -36.51 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.38 Total: -28.56 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -5.02 Total: 14.24 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.43 -7.94 -36.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634380468.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.858 kcal (2) G-P(sol) polarization free energy of solvation -28.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds