Wall clock time and date at job start Sun Mar 29 2020 21:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42905 * 112.94265 * 48.12738 * 9 7 2 11 11 C 1.53946 * 113.73956 * 276.39440 * 9 7 2 12 12 N 1.47574 * 86.11486 * 222.04698 * 11 9 7 13 13 C 1.34776 * 134.49266 * 204.63873 * 12 11 9 14 14 O 1.21281 * 120.00430 * 180.02562 * 13 12 11 15 15 C 1.50698 * 119.99934 * 0.02562 * 13 12 11 16 16 H 1.09001 * 115.55003 * 34.27705 * 15 13 12 17 17 C 1.53004 * 117.49999 * 248.60690 * 15 13 12 18 18 C 1.52997 * 60.00031 * 252.50996 * 17 15 13 19 19 C 1.52993 * 138.58855 * 130.89053 * 18 17 15 20 20 C 1.52991 * 138.58802 * 229.10504 * 18 17 15 21 21 C 1.47582 * 91.01656 * 24.64391 * 12 11 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 0.96696 * 114.00381 * 309.66517 * 10 9 7 24 24 H 1.08998 * 113.77197 * 336.35164 * 11 9 7 25 25 H 1.08999 * 113.77046 * 107.74575 * 11 9 7 26 26 H 1.09000 * 117.49686 * 0.02562 * 17 15 13 27 27 H 1.09007 * 117.49907 * 145.02274 * 17 15 13 28 28 H 1.09000 * 117.50023 * 238.38573 * 19 18 17 29 29 H 1.08999 * 117.49580 * 23.40029 * 19 18 17 30 30 H 1.08994 * 117.50073 * 336.59948 * 20 18 17 31 31 H 1.09000 * 117.49318 * 121.61875 * 20 18 17 32 32 H 1.09009 * 113.76507 * 221.05899 * 21 12 11 33 33 H 1.08991 * 113.77115 * 89.66081 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.2159 -2.5404 -0.9898 11 6 0.7991 -2.9603 1.3922 12 7 1.2205 -4.3109 0.9727 13 6 0.8820 -5.5627 1.3402 14 8 1.4096 -6.5152 0.8060 15 6 -0.1519 -5.7788 2.4150 16 1 -0.9594 -5.0472 2.4445 17 6 0.3253 -6.3584 3.7482 18 6 -0.4928 -7.2232 2.7872 19 6 -0.4270 -8.6163 2.1581 20 6 -1.7175 -8.1393 2.8275 21 6 2.1614 -3.7405 -0.0108 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3761 -1.7761 -0.9703 24 1 1.3955 -2.5467 2.2054 25 1 -0.2739 -2.8671 1.5600 26 1 1.3873 -6.5829 3.8480 27 1 -0.1685 -6.0083 4.6548 28 1 -0.4172 -8.6771 1.0698 29 1 0.1581 -9.3756 2.6768 30 1 -1.9814 -8.5848 3.7865 31 1 -2.5567 -7.8862 2.1795 32 1 2.1760 -4.2704 -0.9633 33 1 3.1579 -3.5562 0.3902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634380469.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:01 Heat of formation + Delta-G solvation = 10.496661 kcal Electronic energy + Delta-G solvation = -16739.371867 eV Core-core repulsion = 13961.510073 eV Total energy + Delta-G solvation = -2777.861794 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.67608 -38.22223 -36.54579 -33.91878 -32.45394 -32.19788 -28.66979 -25.67161 -25.23399 -23.05942 -22.31353 -20.18156 -19.16998 -17.99659 -17.35168 -16.43086 -15.50764 -15.02327 -14.95681 -14.81726 -14.37152 -13.99417 -13.34532 -12.74332 -12.57966 -12.14121 -11.91098 -11.55212 -11.51858 -11.38851 -11.08762 -11.02611 -10.50463 -10.28803 -10.08858 -9.95442 -9.87847 -9.56832 -9.13403 -8.76607 -8.39545 -7.80171 -6.39932 -4.50000 3.01632 3.13186 3.22760 3.26573 3.39991 3.87827 3.99532 4.18528 4.44092 4.83024 4.90271 4.93918 5.30357 5.52895 5.62302 5.65567 5.70372 5.73230 5.79504 5.96951 5.99975 6.08616 6.21951 6.25627 6.38858 6.54013 6.65473 6.71574 7.10868 7.62961 7.82307 8.51964 8.53614 8.83042 9.21382 9.46416 10.66792 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.049214 B = 0.005566 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.806988 B = 5029.148396 C = 5119.396354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.072 0.928 9 C 0.238 3.762 10 O -0.573 6.573 11 C 0.078 3.922 12 N -0.629 5.629 13 C 0.555 3.445 14 O -0.560 6.560 15 C -0.129 4.129 16 H 0.120 0.880 17 C -0.102 4.102 18 C -0.202 4.202 19 C -0.114 4.114 20 C -0.132 4.132 21 C 0.112 3.888 22 H 0.273 0.727 23 H 0.392 0.608 24 H 0.082 0.918 25 H 0.067 0.933 26 H 0.098 0.902 27 H 0.103 0.897 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.069 0.931 33 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.065 -7.254 6.784 10.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.131 4.131 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.090 0.910 9 C 0.196 3.804 10 O -0.386 6.386 11 C -0.044 4.044 12 N -0.362 5.362 13 C 0.344 3.656 14 O -0.441 6.441 15 C -0.150 4.150 16 H 0.138 0.862 17 C -0.139 4.139 18 C -0.203 4.203 19 C -0.151 4.151 20 C -0.169 4.169 21 C -0.010 4.010 22 H 0.083 0.917 23 H 0.248 0.752 24 H 0.100 0.900 25 H 0.085 0.915 26 H 0.117 0.883 27 H 0.121 0.879 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.088 0.912 33 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -1.719 -8.367 6.395 10.670 hybrid contribution 0.040 1.594 0.278 1.619 sum -1.680 -6.772 6.673 9.655 Atomic orbital electron populations 1.69327 1.06207 1.28051 1.50381 1.25071 0.95011 0.99892 0.93076 0.86278 0.80102 0.82278 0.77853 1.19432 1.20634 1.20684 1.21566 0.93977 0.89984 1.51833 0.90995 1.19861 0.85468 0.91193 0.83884 1.86058 1.45236 1.50649 1.56625 1.24300 0.99944 0.77785 1.02409 1.50105 1.41841 1.04566 1.39696 1.19209 0.82409 0.81597 0.82399 1.90615 1.56362 1.40610 1.56471 1.21900 1.00655 0.95594 0.96804 0.86183 1.22620 0.99768 0.99509 0.91997 1.21145 1.03776 0.90128 1.05238 1.22548 0.98701 0.93451 1.00350 1.22733 0.91355 1.00629 1.02177 1.23456 0.93753 0.92448 0.91351 0.91707 0.75196 0.90017 0.91458 0.88331 0.87862 0.88280 0.88804 0.88585 0.88652 0.91212 0.89704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -22.67 11.08 55.43 0.61 -22.05 16 2 C 0.07 1.78 5.40 -17.82 -0.10 1.68 16 3 Si 0.91 19.34 29.54 -169.99 -5.02 14.32 16 4 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 7 C -0.54 -13.40 8.62 -34.44 -0.30 -13.70 16 8 H 0.07 1.76 7.81 -52.49 -0.41 1.35 16 9 C 0.24 5.73 1.44 -90.85 -0.13 5.60 16 10 O -0.57 -14.87 13.48 -35.23 -0.48 -15.35 16 11 C 0.08 1.69 8.01 -2.98 -0.02 1.67 16 12 N -0.63 -13.65 3.61 -178.35 -0.64 -14.29 16 13 C 0.55 11.72 7.84 -10.99 -0.09 11.63 16 14 O -0.56 -13.25 16.97 5.56 0.09 -13.15 16 15 C -0.13 -2.18 5.94 -91.77 -0.54 -2.73 16 16 H 0.12 1.94 8.14 -51.93 -0.42 1.51 16 17 C -0.10 -1.41 10.23 -26.73 -0.27 -1.68 16 18 C -0.20 -3.01 5.05 -154.52 -0.78 -3.79 16 19 C -0.11 -1.56 10.16 -26.73 -0.27 -1.83 16 20 C -0.13 -1.57 10.53 -26.74 -0.28 -1.85 16 21 C 0.11 2.49 8.22 -2.98 -0.02 2.46 16 22 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 23 H 0.39 10.22 6.45 45.56 0.29 10.51 16 24 H 0.08 1.68 8.09 -51.93 -0.42 1.26 16 25 H 0.07 1.44 8.14 -51.93 -0.42 1.01 16 26 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 27 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.07 1.59 8.14 -51.92 -0.42 1.16 16 33 H 0.08 1.73 8.09 -51.93 -0.42 1.31 16 LS Contribution 289.48 15.07 4.36 4.36 Total: -1.00 -28.46 289.48 -7.78 -36.24 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -3.90 Total: 12.46 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -2.81 Total: -2.53 kcal Atomic # 7 Polarization: -36.32 SS G_CDS: -0.03 Total: -36.35 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.38 Total: -28.50 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.02 Total: 14.32 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.46 -7.78 -36.24 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634380469.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.732 kcal (2) G-P(sol) polarization free energy of solvation -28.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds