Wall clock time and date at job start Sun Mar 29 2020 21:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 O 1.42905 * 112.94265 * 48.12738 * 9 7 2 11 11 C 1.53946 * 113.73956 * 276.39440 * 9 7 2 12 12 N 1.47574 * 86.11486 * 222.04698 * 11 9 7 13 13 C 1.34776 * 134.49266 * 204.63873 * 12 11 9 14 14 O 1.21281 * 120.00430 * 180.02562 * 13 12 11 15 15 C 1.50698 * 119.99934 * 0.02562 * 13 12 11 16 16 H 1.09001 * 115.55003 * 34.27705 * 15 13 12 17 17 C 1.53004 * 117.49999 * 248.60690 * 15 13 12 18 18 C 1.52997 * 60.00031 * 252.50996 * 17 15 13 19 19 C 1.52993 * 138.58855 * 130.89053 * 18 17 15 20 20 C 1.52991 * 138.58802 * 229.10504 * 18 17 15 21 21 C 1.47582 * 91.01656 * 24.64391 * 12 11 9 22 22 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 23 23 H 0.96696 * 114.00381 * 309.66517 * 10 9 7 24 24 H 1.08998 * 113.77197 * 336.35164 * 11 9 7 25 25 H 1.08999 * 113.77046 * 107.74575 * 11 9 7 26 26 H 1.09000 * 117.49686 * 0.02562 * 17 15 13 27 27 H 1.09007 * 117.49907 * 145.02274 * 17 15 13 28 28 H 1.09000 * 117.50023 * 238.38573 * 19 18 17 29 29 H 1.08999 * 117.49580 * 23.40029 * 19 18 17 30 30 H 1.08994 * 117.50073 * 336.59948 * 20 18 17 31 31 H 1.09000 * 117.49318 * 121.61875 * 20 18 17 32 32 H 1.09009 * 113.76507 * 221.05899 * 21 12 11 33 33 H 1.08991 * 113.77115 * 89.66081 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 8 0.2159 -2.5404 -0.9898 11 6 0.7991 -2.9603 1.3922 12 7 1.2205 -4.3109 0.9727 13 6 0.8820 -5.5627 1.3402 14 8 1.4096 -6.5152 0.8060 15 6 -0.1519 -5.7788 2.4150 16 1 -0.9594 -5.0472 2.4445 17 6 0.3253 -6.3584 3.7482 18 6 -0.4928 -7.2232 2.7872 19 6 -0.4270 -8.6163 2.1581 20 6 -1.7175 -8.1393 2.8275 21 6 2.1614 -3.7405 -0.0108 22 1 -0.4850 0.8401 -0.0004 23 1 -0.3761 -1.7761 -0.9703 24 1 1.3955 -2.5467 2.2054 25 1 -0.2739 -2.8671 1.5600 26 1 1.3873 -6.5829 3.8480 27 1 -0.1685 -6.0083 4.6548 28 1 -0.4172 -8.6771 1.0698 29 1 0.1581 -9.3756 2.6768 30 1 -1.9814 -8.5848 3.7865 31 1 -2.5567 -7.8862 2.1795 32 1 2.1760 -4.2704 -0.9633 33 1 3.1579 -3.5562 0.3902 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634380469.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:01 Heat of formation + Delta-G solvation = -7.981769 kcal Electronic energy + Delta-G solvation = -16740.173152 eV Core-core repulsion = 13961.510073 eV Total energy + Delta-G solvation = -2778.663079 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.31175 -39.71710 -38.04067 -35.82262 -34.14163 -33.60574 -30.43549 -27.46259 -27.01862 -24.48598 -23.29818 -21.77389 -20.56519 -19.63991 -19.13547 -18.07684 -17.25627 -16.71856 -16.36343 -16.01984 -15.88525 -15.59631 -15.01027 -14.45782 -14.25731 -13.86881 -13.44209 -13.40610 -12.84348 -12.77629 -12.67096 -12.36928 -12.24627 -12.19803 -11.40501 -11.18693 -11.11800 -10.95046 -10.84360 -10.62825 -10.24597 -9.57886 -8.27517 -6.44579 1.45528 1.47695 1.50813 1.60736 1.86100 2.40390 2.71031 2.78801 2.95509 3.30745 3.51967 3.77356 3.83085 4.07635 4.16654 4.41806 4.47573 4.53343 4.58256 4.71888 4.73767 4.77217 4.80173 4.88516 4.89594 4.99820 5.07046 5.23279 5.26273 5.72341 5.91756 6.61240 6.83122 7.15006 7.29490 7.45733 8.78934 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.049214 B = 0.005566 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 568.806988 B = 5029.148396 C = 5119.396354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.033 3.967 3 Si 0.970 3.030 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.275 1.275 7 C -0.555 4.555 8 H 0.072 0.928 9 C 0.218 3.782 10 O -0.588 6.588 11 C 0.095 3.905 12 N -0.633 5.633 13 C 0.547 3.453 14 O -0.594 6.594 15 C -0.154 4.154 16 H 0.126 0.874 17 C -0.077 4.077 18 C -0.224 4.224 19 C -0.129 4.129 20 C -0.101 4.101 21 C 0.110 3.890 22 H 0.276 0.724 23 H 0.388 0.612 24 H 0.094 0.906 25 H 0.067 0.933 26 H 0.093 0.907 27 H 0.137 0.863 28 H 0.076 0.924 29 H 0.110 0.890 30 H 0.128 0.872 31 H 0.100 0.900 32 H 0.056 0.944 33 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.412 -7.232 8.620 11.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.167 4.167 3 Si 0.795 3.205 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.201 1.201 7 C -0.593 4.593 8 H 0.090 0.910 9 C 0.177 3.823 10 O -0.401 6.401 11 C -0.028 4.028 12 N -0.365 5.365 13 C 0.338 3.662 14 O -0.476 6.476 15 C -0.175 4.175 16 H 0.144 0.856 17 C -0.114 4.114 18 C -0.225 4.225 19 C -0.165 4.165 20 C -0.138 4.138 21 C -0.012 4.012 22 H 0.086 0.914 23 H 0.244 0.756 24 H 0.112 0.888 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.155 0.845 28 H 0.094 0.906 29 H 0.128 0.872 30 H 0.146 0.854 31 H 0.118 0.882 32 H 0.074 0.926 33 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.070 -8.351 8.242 11.914 hybrid contribution 0.144 1.537 -0.354 1.584 sum -1.927 -6.814 7.888 10.600 Atomic orbital electron populations 1.69384 1.07169 1.28907 1.50380 1.25756 0.95762 1.02638 0.92579 0.85315 0.78930 0.78498 0.77716 1.19175 1.20814 1.20063 1.21766 0.94163 0.90750 1.52634 0.90955 1.20142 0.85553 0.91767 0.84843 1.86044 1.45739 1.50528 1.57776 1.24099 1.00034 0.77430 1.01229 1.50164 1.41754 1.05044 1.39576 1.20022 0.82689 0.80701 0.82784 1.90585 1.57834 1.41354 1.57847 1.21845 1.00282 0.97776 0.97554 0.85601 1.22738 0.99767 0.97394 0.91535 1.21458 1.06575 0.89259 1.05199 1.22622 1.01014 0.93498 0.99408 1.22889 0.90090 0.97594 1.03198 1.23466 0.94612 0.91791 0.91376 0.91374 0.75639 0.88764 0.91482 0.88850 0.84502 0.90567 0.87217 0.85414 0.88212 0.92585 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -45.97 11.08 21.45 0.24 -45.73 16 2 C 0.03 1.62 5.40 84.66 0.46 2.07 16 3 Si 0.97 39.03 29.54 68.60 2.03 41.06 16 4 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.37 7.11 99.48 0.71 -10.66 16 6 H -0.28 -10.76 7.11 99.48 0.71 -10.05 16 7 C -0.56 -27.68 8.62 25.60 0.22 -27.46 16 8 H 0.07 3.51 7.81 -2.91 -0.02 3.49 16 9 C 0.22 10.58 1.44 -10.88 -0.02 10.57 16 10 O -0.59 -31.13 13.48 -148.98 -2.01 -33.14 16 11 C 0.09 4.05 8.01 86.48 0.69 4.75 16 12 N -0.63 -27.55 3.61 -840.42 -3.03 -30.59 16 13 C 0.55 23.19 7.84 87.66 0.69 23.87 16 14 O -0.59 -28.56 16.97 -3.03 -0.05 -28.61 16 15 C -0.15 -5.05 5.94 -11.54 -0.07 -5.11 16 16 H 0.13 3.91 8.14 -2.39 -0.02 3.89 16 17 C -0.08 -1.95 10.23 30.59 0.31 -1.63 16 18 C -0.22 -6.22 5.05 -52.19 -0.26 -6.49 16 19 C -0.13 -3.36 10.16 30.59 0.31 -3.05 16 20 C -0.10 -2.09 10.53 30.59 0.32 -1.76 16 21 C 0.11 4.95 8.22 86.48 0.71 5.66 16 22 H 0.28 13.04 8.31 -92.70 -0.77 12.27 16 23 H 0.39 20.64 6.45 -74.06 -0.48 20.17 16 24 H 0.09 3.77 8.09 -2.39 -0.02 3.75 16 25 H 0.07 2.85 8.14 -2.39 -0.02 2.83 16 26 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 28 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.11 2.46 8.14 -2.39 -0.02 2.44 16 30 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.06 2.63 8.14 -2.38 -0.02 2.61 16 33 H 0.10 4.17 8.09 -2.39 -0.02 4.15 16 Total: -1.00 -60.73 289.48 1.18 -59.55 By element: Atomic # 1 Polarization: 35.41 SS G_CDS: 0.64 Total: 36.04 kcal Atomic # 6 Polarization: -1.95 SS G_CDS: 3.37 Total: 1.42 kcal Atomic # 7 Polarization: -73.52 SS G_CDS: -2.79 Total: -76.32 kcal Atomic # 8 Polarization: -59.69 SS G_CDS: -2.06 Total: -61.75 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Total: -60.73 1.18 -59.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634380469.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.569 kcal (2) G-P(sol) polarization free energy of solvation -60.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds