Wall clock time and date at job start Sun Mar 29 2020 22:40:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46767 * 167.77615 * 3 2 1 5 5 C 1.37092 * 119.99727 * 264.13710 * 4 3 2 6 6 H 1.08000 * 120.00040 * 197.42832 * 5 4 3 7 7 C 1.38956 * 120.00204 * 17.42607 * 5 4 3 8 8 N 1.31403 * 119.99764 * 21.54219 * 7 5 4 9 9 Si 1.86797 * 119.99935 * 201.54407 * 7 5 4 10 10 H 1.48501 * 109.47134 * 89.99901 * 9 7 5 11 11 H 1.48503 * 109.47268 * 210.00045 * 9 7 5 12 12 H 1.48506 * 109.47339 * 330.00264 * 9 7 5 13 13 C 1.34774 * 119.99842 * 84.13948 * 4 3 2 14 14 O 1.21293 * 119.99563 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00176 * 359.72650 * 13 4 3 16 16 C 1.53000 * 109.46784 * 180.27640 * 15 13 4 17 17 O 1.42896 * 112.85171 * 53.80138 * 16 15 13 18 18 C 1.53779 * 113.61386 * 282.48916 * 16 15 13 19 19 C 1.53772 * 87.08618 * 220.02331 * 18 16 15 20 20 C 1.53780 * 87.07944 * 25.43389 * 19 18 16 21 21 H 4.40646 * 5.51405 * 180.02562 * 4 1 2 22 22 H 1.09002 * 109.47308 * 47.77958 * 3 2 1 23 23 H 1.08999 * 109.47166 * 287.77062 * 3 2 1 24 24 H 0.97009 * 119.99958 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.46702 * 300.26883 * 15 13 4 26 26 H 1.08999 * 109.47364 * 60.27475 * 15 13 4 27 27 H 0.96693 * 114.00135 * 309.66350 * 17 16 15 28 28 H 1.09003 * 113.61446 * 334.57434 * 18 16 15 29 29 H 1.09005 * 113.61150 * 105.47191 * 18 16 15 30 30 H 1.09000 * 113.61891 * 270.89245 * 19 18 16 31 31 H 1.08997 * 113.69861 * 139.99211 * 19 18 16 32 32 H 1.09005 * 113.61751 * 220.01885 * 20 19 18 33 33 H 1.09001 * 113.61979 * 89.11746 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3509 -0.2925 5 6 3.4763 1.6930 -1.5750 6 1 4.0883 2.5642 -1.7563 7 6 3.0363 0.9189 -2.6418 8 7 1.9853 0.1429 -2.5009 9 14 3.9388 0.9814 -4.2760 10 1 5.0075 -0.0496 -4.2911 11 1 2.9817 0.7183 -5.3806 12 1 4.5449 2.3252 -4.4558 13 6 3.2455 2.2565 0.6994 14 8 3.6497 3.3742 0.4573 15 6 2.8630 1.8822 2.1082 16 6 3.0767 3.0838 3.0309 17 8 2.4056 4.2600 2.5747 18 6 4.5495 3.3187 3.4054 19 6 4.0546 3.6503 4.8230 20 6 2.8307 2.7711 4.5164 21 1 -1.0502 -0.0004 0.0003 22 1 3.0097 -0.6898 -0.7611 23 1 3.0095 -0.3128 0.9786 24 1 1.6783 -0.3979 -3.2455 25 1 1.8142 1.5866 2.1335 26 1 3.4830 1.0511 2.4444 27 1 2.5751 4.4749 1.6473 28 1 5.1616 2.4181 3.3562 29 1 5.0009 4.1671 2.8909 30 1 3.8110 4.7032 4.9654 31 1 4.6909 3.2524 5.6135 32 1 1.8943 3.1774 4.8988 33 1 2.9727 1.7208 4.7708 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001634808488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:18 Heat of formation + Delta-G solvation = 1.319635 kcal Electronic energy + Delta-G solvation = -17231.170017 eV Core-core repulsion = 14452.910277 eV Total energy + Delta-G solvation = -2778.259739 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.71323 -37.98886 -35.25743 -33.84011 -32.24318 -31.28287 -29.59277 -26.48728 -25.41144 -24.77194 -22.73440 -19.29582 -19.09503 -17.92371 -16.67643 -16.28882 -15.77649 -14.93554 -14.78564 -14.57393 -14.18531 -13.95753 -13.12113 -13.02045 -12.41340 -12.23644 -11.96063 -11.75275 -11.57693 -11.07740 -11.02357 -10.84857 -10.55539 -10.52697 -10.37893 -9.92990 -9.41951 -9.33924 -9.11923 -8.93783 -8.44881 -7.94567 -6.39476 -3.92364 3.10811 3.22439 3.26739 3.60006 3.85519 4.00710 4.13698 4.53766 4.77846 4.91636 4.98746 5.10629 5.25423 5.31255 5.43410 5.74163 5.82877 5.89706 5.96620 6.01168 6.10862 6.20263 6.30182 6.44867 6.62287 6.66865 6.72720 6.98489 7.50849 7.97142 8.28605 8.43625 8.76896 9.07481 9.29262 9.82600 10.61114 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032665 B = 0.007665 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.991937 B = 3652.059086 C = 4176.399201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.257 4.257 2 C -0.116 4.116 3 C 0.231 3.769 4 N -0.435 5.435 5 C -0.319 4.319 6 H 0.106 0.894 7 C 0.032 3.968 8 N -0.860 5.860 9 Si 0.922 3.078 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.269 1.269 13 C 0.451 3.549 14 O -0.588 6.588 15 C -0.154 4.154 16 C 0.137 3.863 17 O -0.556 6.556 18 C -0.158 4.158 19 C -0.135 4.135 20 C -0.131 4.131 21 H 0.200 0.800 22 H 0.110 0.890 23 H 0.062 0.938 24 H 0.269 0.731 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.394 0.606 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.079 0.921 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -1.752 9.000 9.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.276 4.276 2 C -0.118 4.118 3 C 0.107 3.893 4 N -0.152 5.152 5 C -0.446 4.446 6 H 0.123 0.877 7 C -0.172 4.172 8 N -0.497 5.497 9 Si 0.748 3.252 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.194 1.194 13 C 0.241 3.759 14 O -0.475 6.475 15 C -0.195 4.195 16 C 0.095 3.905 17 O -0.370 6.370 18 C -0.196 4.196 19 C -0.173 4.173 20 C -0.168 4.168 21 H 0.217 0.783 22 H 0.128 0.872 23 H 0.080 0.920 24 H 0.079 0.921 25 H 0.105 0.895 26 H 0.103 0.897 27 H 0.251 0.749 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.098 0.902 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 1.315 -1.339 9.300 9.488 hybrid contribution 0.132 -0.293 -1.632 1.664 sum 1.447 -1.633 7.668 7.972 Atomic orbital electron populations 1.24301 0.95401 1.01714 1.06167 1.23122 0.94316 0.98755 0.95557 1.18273 0.84385 0.86976 0.99619 1.43722 1.55146 1.08757 1.07567 1.19702 1.30489 1.13700 0.80737 0.87652 1.25310 0.95080 0.97221 0.99630 1.70095 1.19539 1.27211 1.32891 0.85996 0.79161 0.78993 0.81007 1.20303 1.21068 1.19365 1.20033 0.84118 0.85267 0.86469 1.90342 1.52142 1.21143 1.83902 1.22200 1.03191 0.99285 0.94786 1.21630 0.91883 0.85043 0.91936 1.86194 1.72198 1.43288 1.35355 1.23518 0.97603 1.02244 0.96238 1.22743 0.97396 1.00123 0.97024 1.23067 0.99160 1.00062 0.94539 0.78321 0.87218 0.91963 0.92050 0.89516 0.89659 0.74926 0.90140 0.90782 0.90190 0.91935 0.90970 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.29 19.25 29.55 0.57 -4.72 16 2 C -0.12 -2.56 10.86 -37.12 -0.40 -2.97 16 3 C 0.23 4.99 4.91 -6.83 -0.03 4.95 16 4 N -0.43 -10.67 2.60 -117.93 -0.31 -10.98 16 5 C -0.32 -8.57 9.33 -14.93 -0.14 -8.71 16 6 H 0.11 2.98 7.38 -52.49 -0.39 2.59 16 7 C 0.03 0.83 4.86 -17.47 -0.08 0.74 16 8 N -0.86 -22.22 9.48 55.50 0.53 -21.70 16 9 Si 0.92 20.14 29.60 -169.99 -5.03 15.11 16 10 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 13 C 0.45 10.52 7.33 -10.99 -0.08 10.44 16 14 O -0.59 -15.10 13.24 -14.27 -0.19 -15.28 16 15 C -0.15 -2.85 3.95 -27.88 -0.11 -2.96 16 16 C 0.14 2.41 1.10 -89.81 -0.10 2.31 16 17 O -0.56 -11.22 13.39 -55.04 -0.74 -11.96 16 18 C -0.16 -2.53 7.16 -25.92 -0.19 -2.72 16 19 C -0.14 -1.83 8.02 -25.92 -0.21 -2.04 16 20 C -0.13 -1.84 7.47 -25.92 -0.19 -2.03 16 21 H 0.20 3.34 7.80 -54.08 -0.42 2.92 16 22 H 0.11 2.50 6.44 -51.93 -0.33 2.16 16 23 H 0.06 1.11 6.69 -51.93 -0.35 0.76 16 24 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 25 H 0.09 1.62 7.49 -51.93 -0.39 1.23 16 26 H 0.09 1.35 7.33 -51.93 -0.38 0.97 16 27 H 0.39 8.51 6.20 45.56 0.28 8.79 16 28 H 0.08 1.19 8.04 -51.93 -0.42 0.77 16 29 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.09 1.06 8.10 -51.93 -0.42 0.64 16 LS Contribution 280.22 15.07 4.22 4.22 Total: -1.00 -29.47 280.22 -6.13 -35.59 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -3.64 Total: 12.70 kcal Atomic # 6 Polarization: -6.73 SS G_CDS: -0.97 Total: -7.70 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: 0.22 Total: -32.68 kcal Atomic # 8 Polarization: -26.32 SS G_CDS: -0.93 Total: -27.24 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.03 Total: 15.11 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.47 -6.13 -35.59 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634808488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.912 kcal (2) G-P(sol) polarization free energy of solvation -29.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.592 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds