Wall clock time and date at job start Sun Mar 29 2020 22:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46508 * 109.46767 * 167.77615 * 3 2 1 5 5 C 1.37092 * 119.99727 * 264.13710 * 4 3 2 6 6 H 1.08000 * 120.00040 * 197.42832 * 5 4 3 7 7 C 1.38956 * 120.00204 * 17.42607 * 5 4 3 8 8 N 1.31403 * 119.99764 * 21.54219 * 7 5 4 9 9 Si 1.86797 * 119.99935 * 201.54407 * 7 5 4 10 10 H 1.48501 * 109.47134 * 89.99901 * 9 7 5 11 11 H 1.48503 * 109.47268 * 210.00045 * 9 7 5 12 12 H 1.48506 * 109.47339 * 330.00264 * 9 7 5 13 13 C 1.34774 * 119.99842 * 84.13948 * 4 3 2 14 14 O 1.21293 * 119.99563 * 179.97438 * 13 4 3 15 15 C 1.50702 * 120.00176 * 359.72650 * 13 4 3 16 16 C 1.53000 * 109.46784 * 180.27640 * 15 13 4 17 17 O 1.42896 * 112.85171 * 53.80138 * 16 15 13 18 18 C 1.53779 * 113.61386 * 282.48916 * 16 15 13 19 19 C 1.53772 * 87.08618 * 220.02331 * 18 16 15 20 20 C 1.53780 * 87.07944 * 25.43389 * 19 18 16 21 21 H 4.40646 * 5.51405 * 180.02562 * 4 1 2 22 22 H 1.09002 * 109.47308 * 47.77958 * 3 2 1 23 23 H 1.08999 * 109.47166 * 287.77062 * 3 2 1 24 24 H 0.97009 * 119.99958 * 180.02562 * 8 7 5 25 25 H 1.08999 * 109.46702 * 300.26883 * 15 13 4 26 26 H 1.08999 * 109.47364 * 60.27475 * 15 13 4 27 27 H 0.96693 * 114.00135 * 309.66350 * 17 16 15 28 28 H 1.09003 * 113.61446 * 334.57434 * 18 16 15 29 29 H 1.09005 * 113.61150 * 105.47191 * 18 16 15 30 30 H 1.09000 * 113.61891 * 270.89245 * 19 18 16 31 31 H 1.08997 * 113.69861 * 139.99211 * 19 18 16 32 32 H 1.09005 * 113.61751 * 220.01885 * 20 19 18 33 33 H 1.09001 * 113.61979 * 89.11746 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3509 -0.2925 5 6 3.4763 1.6930 -1.5750 6 1 4.0883 2.5642 -1.7563 7 6 3.0363 0.9189 -2.6418 8 7 1.9853 0.1429 -2.5009 9 14 3.9388 0.9814 -4.2760 10 1 5.0075 -0.0496 -4.2911 11 1 2.9817 0.7183 -5.3806 12 1 4.5449 2.3252 -4.4558 13 6 3.2455 2.2565 0.6994 14 8 3.6497 3.3742 0.4573 15 6 2.8630 1.8822 2.1082 16 6 3.0767 3.0838 3.0309 17 8 2.4056 4.2600 2.5747 18 6 4.5495 3.3187 3.4054 19 6 4.0546 3.6503 4.8230 20 6 2.8307 2.7711 4.5164 21 1 -1.0502 -0.0004 0.0003 22 1 3.0097 -0.6898 -0.7611 23 1 3.0095 -0.3128 0.9786 24 1 1.6783 -0.3979 -3.2455 25 1 1.8142 1.5866 2.1335 26 1 3.4830 1.0511 2.4444 27 1 2.5751 4.4749 1.6473 28 1 5.1616 2.4181 3.3562 29 1 5.0009 4.1671 2.8909 30 1 3.8110 4.7032 4.9654 31 1 4.6909 3.2524 5.6135 32 1 1.8943 3.1774 4.8988 33 1 2.9727 1.7208 4.7708 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001634808488.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:40:17 Heat of formation + Delta-G solvation = -16.861832 kcal Electronic energy + Delta-G solvation = -17231.958424 eV Core-core repulsion = 14452.910277 eV Total energy + Delta-G solvation = -2779.048147 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.23567 -39.57480 -37.07165 -35.30447 -34.09579 -33.04042 -31.14064 -28.23176 -26.65186 -26.50521 -24.12853 -20.90912 -20.49060 -19.69589 -18.42659 -18.02995 -17.19379 -16.64603 -16.32683 -16.19109 -15.67458 -15.56803 -14.68987 -14.56440 -14.07811 -13.72277 -13.54237 -13.42719 -13.09082 -12.80745 -12.55901 -12.36817 -12.17528 -12.04820 -11.71191 -11.24493 -11.19382 -11.10202 -10.63018 -10.50223 -10.24615 -9.85081 -8.33690 -5.94112 1.35332 1.42351 1.52882 1.85892 2.12608 2.31823 2.37572 3.03222 3.12094 3.26293 3.71020 3.78422 3.88641 3.90660 3.98435 4.32014 4.46293 4.59449 4.71463 4.78850 4.84597 4.88386 4.96123 5.09082 5.19261 5.40018 5.41433 5.47099 5.50227 6.04251 6.41188 6.76251 7.12791 7.15302 7.41745 7.96788 8.64622 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.032665 B = 0.007665 C = 0.006703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.991937 B = 3652.059086 C = 4176.399201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.154 4.154 3 C 0.232 3.768 4 N -0.449 5.449 5 C -0.354 4.354 6 H 0.077 0.923 7 C 0.004 3.996 8 N -0.871 5.871 9 Si 0.983 3.017 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.278 1.278 13 C 0.442 3.558 14 O -0.622 6.622 15 C -0.141 4.141 16 C 0.111 3.889 17 O -0.571 6.571 18 C -0.163 4.163 19 C -0.123 4.123 20 C -0.117 4.117 21 H 0.232 0.768 22 H 0.093 0.907 23 H 0.101 0.899 24 H 0.272 0.728 25 H 0.087 0.913 26 H 0.118 0.882 27 H 0.383 0.617 28 H 0.095 0.905 29 H 0.047 0.953 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.073 0.927 33 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.237 -3.139 10.310 10.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C -0.156 4.156 3 C 0.110 3.890 4 N -0.166 5.166 5 C -0.481 4.481 6 H 0.095 0.905 7 C -0.200 4.200 8 N -0.508 5.508 9 Si 0.807 3.193 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.203 1.203 13 C 0.233 3.767 14 O -0.511 6.511 15 C -0.181 4.181 16 C 0.069 3.931 17 O -0.383 6.383 18 C -0.200 4.200 19 C -0.161 4.161 20 C -0.154 4.154 21 H 0.248 0.752 22 H 0.111 0.889 23 H 0.118 0.882 24 H 0.082 0.918 25 H 0.105 0.895 26 H 0.136 0.864 27 H 0.237 0.763 28 H 0.114 0.886 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 1.130 -2.755 10.637 11.046 hybrid contribution 0.146 0.160 -2.039 2.050 sum 1.276 -2.594 8.599 9.072 Atomic orbital electron populations 1.25159 0.96409 1.00139 1.04779 1.23456 0.95027 1.00182 0.96893 1.18348 0.84538 0.85136 1.00998 1.43921 1.55481 1.10141 1.07069 1.19590 1.31787 1.14028 0.82719 0.90518 1.25954 0.95366 0.96538 1.02130 1.70182 1.19772 1.27124 1.33716 0.85099 0.78287 0.78626 0.77298 1.18915 1.20470 1.20343 1.20943 0.82862 0.84677 0.88188 1.90320 1.53278 1.22623 1.84859 1.22184 1.03582 1.00789 0.91549 1.22157 0.93241 0.83837 0.93821 1.86180 1.72923 1.44825 1.34390 1.23568 0.96622 1.02004 0.97842 1.22690 0.97318 0.99899 0.96158 1.23127 0.99428 1.02001 0.90886 0.75185 0.88926 0.88161 0.91815 0.89453 0.86416 0.76252 0.88642 0.93402 0.90999 0.88771 0.90871 0.86199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.69 19.25 74.32 1.43 -8.26 16 2 C -0.15 -6.65 10.86 31.12 0.34 -6.31 16 3 C 0.23 9.88 4.91 84.57 0.42 10.30 16 4 N -0.45 -22.29 2.60 -645.40 -1.68 -23.97 16 5 C -0.35 -19.54 9.33 84.04 0.78 -18.76 16 6 H 0.08 4.57 7.38 -2.91 -0.02 4.55 16 7 C 0.00 0.20 4.86 84.93 0.41 0.61 16 8 N -0.87 -44.86 9.48 21.66 0.21 -44.65 16 9 Si 0.98 41.58 29.60 68.60 2.03 43.61 16 10 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 11 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 12 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.44 20.83 7.33 87.66 0.64 21.47 16 14 O -0.62 -33.12 13.24 15.87 0.21 -32.91 16 15 C -0.14 -4.99 3.95 29.85 0.12 -4.88 16 16 C 0.11 3.76 1.10 -10.27 -0.01 3.75 16 17 O -0.57 -23.30 13.39 -130.04 -1.74 -25.04 16 18 C -0.16 -4.98 7.16 31.12 0.22 -4.76 16 19 C -0.12 -2.98 8.02 31.12 0.25 -2.73 16 20 C -0.12 -2.91 7.47 31.12 0.23 -2.68 16 21 H 0.23 7.08 7.80 -4.41 -0.03 7.05 16 22 H 0.09 4.21 6.44 -2.39 -0.02 4.20 16 23 H 0.10 3.37 6.69 -2.39 -0.02 3.35 16 24 H 0.27 13.29 8.31 -92.70 -0.77 12.52 16 25 H 0.09 3.10 7.49 -2.39 -0.02 3.08 16 26 H 0.12 3.36 7.33 -2.39 -0.02 3.34 16 27 H 0.38 17.29 6.20 -74.06 -0.46 16.83 16 28 H 0.10 2.59 8.04 -2.39 -0.02 2.58 16 29 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 31 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.82 8.14 -2.38 -0.02 1.81 16 33 H 0.12 2.25 8.10 -2.39 -0.02 2.23 16 Total: -1.00 -65.04 280.22 4.51 -60.53 By element: Atomic # 1 Polarization: 34.02 SS G_CDS: 0.65 Total: 34.68 kcal Atomic # 6 Polarization: -17.08 SS G_CDS: 4.83 Total: -12.24 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -1.47 Total: -68.62 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -1.53 Total: -57.95 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Total: -65.04 4.51 -60.53 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001634808488.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.668 kcal (2) G-P(sol) polarization free energy of solvation -65.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.376 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds