Wall clock time and date at job start Sun Mar 29 2020 21:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35986 * 117.00155 * 2 1 4 4 C 1.38716 * 119.99851 * 0.02562 * 3 2 1 5 5 C 1.38113 * 119.99966 * 179.97438 * 4 3 2 6 6 C 1.38721 * 119.99785 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99900 * 179.97438 * 6 5 4 8 8 C 1.38674 * 120.00108 * 0.02562 * 6 5 4 9 9 C 1.50699 * 119.99909 * 179.97438 * 8 6 5 10 10 N 1.46906 * 109.46990 * 285.00044 * 9 8 6 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46656 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00358 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99768 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00203 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00034 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47118 * 89.99770 * 16 14 12 18 18 H 1.48500 * 109.47037 * 209.99864 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00240 * 16 14 12 20 20 C 1.38153 * 120.00046 * 0.23328 * 8 6 5 21 21 H 1.09005 * 109.47244 * 60.00002 * 1 2 3 22 22 H 1.08995 * 109.47487 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47458 * 300.00010 * 1 2 3 24 24 H 1.07996 * 120.00042 * 359.97438 * 4 3 2 25 25 H 1.07997 * 120.00151 * 179.97438 * 5 4 3 26 26 H 0.96698 * 113.99736 * 270.02260 * 7 6 5 27 27 H 1.09002 * 109.47064 * 165.00320 * 9 8 6 28 28 H 1.09000 * 109.47099 * 45.00046 * 9 8 6 29 29 H 1.00896 * 111.00309 * 56.04484 * 10 9 8 30 30 H 1.08990 * 109.47358 * 299.99539 * 11 10 9 31 31 H 1.09004 * 109.47457 * 60.00221 * 11 10 9 32 32 H 0.96997 * 120.00560 * 179.97438 * 15 14 12 33 33 H 1.07995 * 120.00165 * 179.72306 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8898 0.0005 8 6 4.0584 2.5151 -0.0011 9 6 5.5634 2.5939 -0.0022 10 7 6.0325 2.9787 -1.3402 11 6 7.4984 3.0651 -1.3792 12 6 7.9415 3.4606 -2.7643 13 1 7.2076 3.6311 -3.5380 14 6 9.2839 3.6057 -3.0435 15 7 10.1776 3.3995 -2.1010 16 14 9.8331 4.0966 -4.7602 17 1 9.9082 5.5769 -4.8515 18 1 11.1711 3.5150 -5.0370 19 1 8.8565 3.5882 -5.7567 20 6 3.4312 1.2842 -0.0070 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.2124 2.3185 0.0005 25 1 1.3297 4.5113 0.0011 26 1 4.0985 5.2405 -0.8829 27 1 5.9783 1.6214 0.2625 28 1 5.8888 3.3380 0.7248 29 1 5.6108 3.8464 -1.6356 30 1 7.8376 3.8122 -0.6618 31 1 7.9265 2.0956 -1.1242 32 1 11.1220 3.5013 -2.2975 33 1 4.0194 0.3784 -0.0128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000020200223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:29 Heat of formation + Delta-G solvation = -58.646232 kcal Electronic energy + Delta-G solvation = -16171.470019 eV Core-core repulsion = 13390.609965 eV Total energy + Delta-G solvation = -2780.860055 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.28596 -38.53766 -35.82213 -35.14429 -32.65414 -31.05537 -29.42706 -27.17029 -26.86540 -24.23415 -22.53006 -21.50485 -20.92196 -18.06779 -17.78596 -16.54591 -16.35607 -15.82414 -15.22459 -14.86112 -14.54067 -14.10035 -14.06474 -13.37645 -13.13952 -12.67778 -12.49403 -12.29240 -11.88715 -11.45073 -11.36181 -11.25023 -10.92279 -10.69923 -10.67028 -10.20211 -9.92089 -9.21182 -8.80488 -8.47959 -7.95646 -7.31953 -6.03224 -4.05569 1.34426 1.39993 3.21088 3.32006 3.38173 3.42708 3.66293 4.42919 4.45085 4.75797 4.84777 4.97986 4.99192 5.20553 5.29244 5.32718 5.44508 5.54992 5.61527 5.92616 6.06082 6.19608 6.31861 6.33244 6.59037 6.77781 7.22623 7.33007 7.40765 7.76360 7.84869 8.10887 8.35144 8.56816 9.03129 9.59307 11.07870 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037402 B = 0.004725 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.441146 B = 5924.529101 C = 6161.703571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.115 3.885 4 C -0.202 4.202 5 C -0.108 4.108 6 C 0.073 3.927 7 O -0.495 6.495 8 C -0.049 4.049 9 C 0.095 3.905 10 N -0.680 5.680 11 C 0.193 3.807 12 C -0.515 4.515 13 H 0.062 0.938 14 C 0.056 3.944 15 N -0.897 5.897 16 Si 0.899 3.101 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.121 4.121 21 H 0.054 0.946 22 H 0.097 0.903 23 H 0.053 0.947 24 H 0.127 0.873 25 H 0.128 0.872 26 H 0.388 0.612 27 H 0.075 0.925 28 H 0.040 0.960 29 H 0.324 0.676 30 H -0.011 1.011 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.758 -2.368 4.660 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.070 3.930 4 C -0.221 4.221 5 C -0.126 4.126 6 C 0.028 3.972 7 O -0.305 6.305 8 C -0.050 4.050 9 C -0.034 4.034 10 N -0.310 5.310 11 C 0.066 3.934 12 C -0.553 4.553 13 H 0.080 0.920 14 C -0.145 4.145 15 N -0.537 5.537 16 Si 0.727 3.273 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.198 1.198 20 C -0.140 4.140 21 H 0.072 0.928 22 H 0.116 0.884 23 H 0.071 0.929 24 H 0.145 0.855 25 H 0.146 0.854 26 H 0.244 0.756 27 H 0.094 0.906 28 H 0.058 0.942 29 H 0.140 0.860 30 H 0.007 0.993 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -18.496 -3.271 5.062 19.453 hybrid contribution 0.303 1.309 -0.900 1.617 sum -18.193 -1.963 4.162 18.766 Atomic orbital electron populations 1.23016 0.78782 1.03698 1.01185 1.86093 1.21044 1.26981 1.89007 1.18979 0.92250 0.84025 0.97714 1.20992 0.99708 0.91854 1.09500 1.21117 0.93788 0.97577 1.00136 1.18222 0.89917 0.84881 1.04177 1.84826 1.79882 1.32208 1.33622 1.20176 0.96876 0.91535 0.96458 1.20814 0.88218 1.01397 0.92955 1.60815 1.11287 1.37425 1.21508 1.19600 0.80486 0.96477 0.96797 1.21162 0.91843 1.46269 0.96074 0.91976 1.24986 0.96634 0.95524 0.97376 1.69960 1.01296 1.49645 1.32759 0.86477 0.77963 0.78514 0.84324 1.20716 1.21223 1.19773 1.20235 0.90963 0.98134 1.04714 0.92751 0.88432 0.92850 0.85496 0.85446 0.75590 0.90646 0.94194 0.85990 0.99304 0.95222 0.92870 0.84665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -4.02 10.50 -19.70 -0.21 -4.22 16 3 C 0.12 1.59 6.69 -39.24 -0.26 1.33 16 4 C -0.20 -2.45 9.03 -39.45 -0.36 -2.81 16 5 C -0.11 -1.39 9.98 -39.45 -0.39 -1.78 16 6 C 0.07 1.11 6.55 -39.24 -0.26 0.85 16 7 O -0.50 -7.32 12.45 -19.70 -0.25 -7.57 16 8 C -0.05 -0.81 5.43 -104.49 -0.57 -1.38 16 9 C 0.10 1.79 5.43 -4.97 -0.03 1.76 16 10 N -0.68 -14.71 6.48 -116.33 -0.75 -15.46 16 11 C 0.19 5.09 5.44 -4.97 -0.03 5.06 16 12 C -0.51 -14.61 9.32 -34.44 -0.32 -14.93 16 13 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 14 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 15 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 16 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 17 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 C -0.12 -1.87 9.60 -39.45 -0.38 -2.25 16 21 H 0.05 0.38 7.66 -51.93 -0.40 -0.01 16 22 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 23 H 0.05 0.36 7.66 -51.93 -0.40 -0.03 16 24 H 0.13 1.17 6.29 -52.49 -0.33 0.84 16 25 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 26 H 0.39 4.49 8.40 45.56 0.38 4.87 16 27 H 0.08 1.40 7.95 -51.93 -0.41 0.98 16 28 H 0.04 0.77 8.00 -51.93 -0.42 0.36 16 29 H 0.32 6.53 7.53 -39.29 -0.30 6.23 16 30 H -0.01 -0.30 8.14 -51.93 -0.42 -0.73 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.14 2.02 8.00 -52.49 -0.42 1.60 16 LS Contribution 286.43 15.07 4.32 4.32 Total: -1.00 -32.26 286.43 -6.39 -38.65 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -3.52 Total: 5.22 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -1.70 Total: -11.41 kcal Atomic # 7 Polarization: -41.62 SS G_CDS: -0.02 Total: -41.64 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: -0.45 Total: -11.79 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -32.26 -6.39 -38.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.993 kcal (2) G-P(sol) polarization free energy of solvation -32.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds