Wall clock time and date at job start Sun Mar 29 2020 21:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35986 * 117.00155 * 2 1 4 4 C 1.38716 * 119.99851 * 0.02562 * 3 2 1 5 5 C 1.38113 * 119.99966 * 179.97438 * 4 3 2 6 6 C 1.38721 * 119.99785 * 0.02562 * 5 4 3 7 7 O 1.35986 * 119.99900 * 179.97438 * 6 5 4 8 8 C 1.38674 * 120.00108 * 0.02562 * 6 5 4 9 9 C 1.50699 * 119.99909 * 179.97438 * 8 6 5 10 10 N 1.46906 * 109.46990 * 285.00044 * 9 8 6 11 11 C 1.46902 * 110.99573 * 180.02562 * 10 9 8 12 12 C 1.50707 * 109.46656 * 179.97438 * 11 10 9 13 13 H 1.07995 * 120.00358 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99768 * 179.97438 * 12 11 10 15 15 N 1.31515 * 120.00203 * 359.97438 * 14 12 11 16 16 Si 1.86801 * 120.00034 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47118 * 89.99770 * 16 14 12 18 18 H 1.48500 * 109.47037 * 209.99864 * 16 14 12 19 19 H 1.48500 * 109.47075 * 330.00240 * 16 14 12 20 20 C 1.38153 * 120.00046 * 0.23328 * 8 6 5 21 21 H 1.09005 * 109.47244 * 60.00002 * 1 2 3 22 22 H 1.08995 * 109.47487 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47458 * 300.00010 * 1 2 3 24 24 H 1.07996 * 120.00042 * 359.97438 * 4 3 2 25 25 H 1.07997 * 120.00151 * 179.97438 * 5 4 3 26 26 H 0.96698 * 113.99736 * 270.02260 * 7 6 5 27 27 H 1.09002 * 109.47064 * 165.00320 * 9 8 6 28 28 H 1.09000 * 109.47099 * 45.00046 * 9 8 6 29 29 H 1.00896 * 111.00309 * 56.04484 * 10 9 8 30 30 H 1.08990 * 109.47358 * 299.99539 * 11 10 9 31 31 H 1.09004 * 109.47457 * 60.00221 * 11 10 9 32 32 H 0.96997 * 120.00560 * 179.97438 * 15 14 12 33 33 H 1.07995 * 120.00165 * 179.72306 * 20 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9179 3.6056 0.0011 6 6 3.3032 3.6781 0.0005 7 8 3.9206 4.8898 0.0005 8 6 4.0584 2.5151 -0.0011 9 6 5.5634 2.5939 -0.0022 10 7 6.0325 2.9787 -1.3402 11 6 7.4984 3.0651 -1.3792 12 6 7.9415 3.4606 -2.7643 13 1 7.2076 3.6311 -3.5380 14 6 9.2839 3.6057 -3.0435 15 7 10.1776 3.3995 -2.1010 16 14 9.8331 4.0966 -4.7602 17 1 9.9082 5.5769 -4.8515 18 1 11.1711 3.5150 -5.0370 19 1 8.8565 3.5882 -5.7567 20 6 3.4312 1.2842 -0.0070 21 1 -0.3634 0.5139 -0.8900 22 1 -0.3634 -1.0276 0.0005 23 1 -0.3634 0.5138 0.8900 24 1 0.2124 2.3185 0.0005 25 1 1.3297 4.5113 0.0011 26 1 4.0985 5.2405 -0.8829 27 1 5.9783 1.6214 0.2625 28 1 5.8888 3.3380 0.7248 29 1 5.6108 3.8464 -1.6356 30 1 7.8376 3.8122 -0.6618 31 1 7.9265 2.0956 -1.1242 32 1 11.1220 3.5013 -2.2975 33 1 4.0194 0.3784 -0.0128 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000020200223.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:29 Heat of formation + Delta-G solvation = -83.396475 kcal Electronic energy + Delta-G solvation = -16172.543270 eV Core-core repulsion = 13390.609965 eV Total energy + Delta-G solvation = -2781.933306 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -41.33379 -39.57691 -37.15877 -36.64542 -34.65044 -32.43543 -30.55496 -28.73528 -27.90142 -25.87738 -23.63121 -23.49220 -22.11405 -19.18616 -18.95364 -18.31733 -17.60873 -16.78323 -16.66395 -16.26742 -16.22896 -15.41441 -15.20516 -14.89949 -14.58555 -14.12227 -13.76295 -13.37361 -13.24676 -13.07618 -12.97220 -12.65108 -12.51466 -12.30875 -12.07294 -11.74254 -11.38066 -11.20342 -10.67008 -9.95794 -9.19076 -8.98583 -8.22391 -6.34294 0.23228 0.32934 1.42336 1.44369 1.56169 2.34923 2.41021 2.58266 3.11094 3.37306 3.62951 3.81329 3.89580 4.12839 4.25731 4.34193 4.45017 4.50004 4.66500 4.75797 4.77737 4.99009 5.06624 5.14083 5.24965 5.27811 5.48193 5.59046 5.65202 5.98966 6.37781 6.42115 6.64622 6.81922 6.88425 7.36712 8.89408 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.037402 B = 0.004725 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.441146 B = 5924.529101 C = 6161.703571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.336 6.336 3 C 0.113 3.887 4 C -0.188 4.188 5 C -0.101 4.101 6 C 0.061 3.939 7 O -0.507 6.507 8 C -0.070 4.070 9 C 0.102 3.898 10 N -0.675 5.675 11 C 0.207 3.793 12 C -0.536 4.536 13 H 0.067 0.933 14 C 0.001 3.999 15 N -0.935 5.935 16 Si 0.976 3.024 17 H -0.270 1.270 18 H -0.282 1.282 19 H -0.264 1.264 20 C -0.139 4.139 21 H 0.067 0.933 22 H 0.118 0.882 23 H 0.068 0.932 24 H 0.164 0.836 25 H 0.156 0.844 26 H 0.400 0.600 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.334 0.666 30 H -0.037 1.037 31 H 0.001 0.999 32 H 0.266 0.734 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.161 -1.900 3.603 21.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.250 6.250 3 C 0.068 3.932 4 C -0.206 4.206 5 C -0.120 4.120 6 C 0.016 3.984 7 O -0.319 6.319 8 C -0.072 4.072 9 C -0.027 4.027 10 N -0.306 5.306 11 C 0.079 3.921 12 C -0.574 4.574 13 H 0.085 0.915 14 C -0.197 4.197 15 N -0.575 5.575 16 Si 0.800 3.200 17 H -0.195 1.195 18 H -0.208 1.208 19 H -0.188 1.188 20 C -0.158 4.158 21 H 0.085 0.915 22 H 0.136 0.864 23 H 0.087 0.913 24 H 0.181 0.819 25 H 0.174 0.826 26 H 0.257 0.743 27 H 0.086 0.914 28 H 0.047 0.953 29 H 0.151 0.849 30 H -0.019 1.019 31 H 0.019 0.981 32 H 0.074 0.926 33 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -20.934 -2.803 4.007 21.498 hybrid contribution 0.921 1.099 -0.506 1.520 sum -20.013 -1.705 3.501 20.389 Atomic orbital electron populations 1.23385 0.76201 1.05661 1.02507 1.86079 1.23716 1.26488 1.88743 1.19020 0.91756 0.85253 0.97179 1.21381 1.01429 0.90721 1.07109 1.21406 0.92773 0.99081 0.98708 1.18392 0.90975 0.84314 1.04746 1.84792 1.80139 1.32138 1.34823 1.19931 0.95037 0.92869 0.99316 1.20697 0.90546 1.00421 0.90991 1.60659 1.08412 1.37897 1.23650 1.19252 0.83263 0.93891 0.95671 1.21511 0.92480 1.46609 0.96774 0.91531 1.25977 0.96622 0.95137 1.01958 1.70096 1.01774 1.50403 1.35217 0.85287 0.77486 0.78556 0.78679 1.19514 1.20790 1.18826 1.20244 0.92319 0.97500 1.05779 0.91464 0.86424 0.91303 0.81864 0.82618 0.74281 0.91382 0.95262 0.84880 1.01912 0.98122 0.92566 0.85430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.85 10.50 -93.39 -0.98 -8.83 16 3 C 0.11 2.94 6.69 22.49 0.15 3.09 16 4 C -0.19 -3.94 9.03 22.35 0.20 -3.74 16 5 C -0.10 -2.32 9.98 22.36 0.22 -2.10 16 6 C 0.06 1.78 6.55 22.49 0.15 1.93 16 7 O -0.51 -14.70 12.45 -93.39 -1.16 -15.87 16 8 C -0.07 -2.34 5.43 -19.78 -0.11 -2.45 16 9 C 0.10 4.02 5.43 85.56 0.46 4.48 16 10 N -0.68 -30.17 6.48 -521.96 -3.38 -33.56 16 11 C 0.21 11.40 5.44 85.56 0.47 11.86 16 12 C -0.54 -30.87 9.32 25.60 0.24 -30.64 16 13 H 0.07 3.69 7.81 -2.91 -0.02 3.67 16 14 C 0.00 0.07 5.46 84.65 0.46 0.54 16 15 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 16 Si 0.98 44.40 29.54 68.60 2.03 46.43 16 17 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 20 C -0.14 -4.32 9.60 22.35 0.21 -4.10 16 21 H 0.07 0.69 7.66 -2.38 -0.02 0.67 16 22 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 23 H 0.07 0.67 7.66 -2.38 -0.02 0.65 16 24 H 0.16 2.20 6.29 -2.91 -0.02 2.18 16 25 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 26 H 0.40 9.02 8.40 -74.06 -0.62 8.39 16 27 H 0.07 2.70 7.95 -2.39 -0.02 2.68 16 28 H 0.03 1.20 8.00 -2.39 -0.02 1.18 16 29 H 0.33 13.70 7.53 -89.70 -0.68 13.02 16 30 H -0.04 -2.18 8.14 -2.39 -0.02 -2.19 16 31 H 0.00 0.04 8.14 -2.38 -0.02 0.02 16 32 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 33 H 0.13 3.99 8.00 -2.91 -0.02 3.96 16 Total: -1.00 -70.16 286.43 0.19 -69.96 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -0.17 Total: 18.54 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: 3.57 Total: -19.81 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -3.10 Total: -90.43 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -2.14 Total: -24.70 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -70.16 0.19 -69.96 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000020200223.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.433 kcal (2) G-P(sol) polarization free energy of solvation -70.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds