Wall clock time and date at job start Sun Mar 29 2020 21:43:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35991 * 117.00200 * 2 1 4 4 C 1.38690 * 119.96652 * 359.97438 * 3 2 1 5 5 C 1.38234 * 120.10246 * 180.02562 * 4 3 2 6 6 C 1.38677 * 120.03508 * 0.02562 * 5 4 3 7 7 N 1.40223 * 120.03703 * 179.97438 * 6 5 4 8 8 C 1.46503 * 119.99584 * 0.02562 * 7 6 5 9 9 C 1.50706 * 109.46823 * 180.02562 * 8 7 6 10 10 H 1.08001 * 120.00340 * 359.97438 * 9 8 7 11 11 C 1.37879 * 119.99793 * 180.02562 * 9 8 7 12 12 N 1.31514 * 119.99973 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 119.99663 * 179.97438 * 11 9 8 14 14 H 1.48507 * 109.46607 * 90.00520 * 13 11 9 15 15 H 1.48501 * 109.47076 * 209.99951 * 13 11 9 16 16 H 1.48493 * 109.47297 * 330.00509 * 13 11 9 17 17 C 1.39283 * 119.92873 * 359.97438 * 6 5 4 18 18 O 1.36001 * 120.05155 * 180.02562 * 17 6 5 19 19 C 1.42903 * 117.00304 * 180.02562 * 18 17 6 20 20 C 1.38498 * 119.89744 * 0.27816 * 17 6 5 21 21 H 1.08993 * 109.47106 * 180.02562 * 1 2 3 22 22 H 1.09003 * 109.47137 * 300.00466 * 1 2 3 23 23 H 1.08998 * 109.46966 * 59.99840 * 1 2 3 24 24 H 1.07994 * 119.94565 * 0.02562 * 4 3 2 25 25 H 1.08001 * 119.97934 * 179.97438 * 5 4 3 26 26 H 0.97002 * 120.00052 * 180.02562 * 7 6 5 27 27 H 1.09005 * 109.47430 * 299.99965 * 8 7 6 28 28 H 1.08997 * 109.47406 * 60.00207 * 8 7 6 29 29 H 0.96999 * 119.99471 * 180.02562 * 12 11 9 30 30 H 1.09002 * 109.47382 * 179.97438 * 19 18 17 31 31 H 1.09001 * 109.46938 * 59.99841 * 19 18 17 32 32 H 1.09004 * 109.46926 * 299.99962 * 19 18 17 33 33 H 1.08005 * 120.01687 * 179.72710 * 20 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2905 2.3744 -0.0005 5 6 1.9151 3.6075 -0.0011 6 6 3.2998 3.6842 -0.0016 7 7 3.9335 4.9351 -0.0027 8 6 3.1327 6.1618 -0.0027 9 6 4.0479 7.3591 -0.0046 10 1 5.1190 7.2202 -0.0053 11 6 3.5179 8.6320 -0.0044 12 7 2.2137 8.8012 -0.0020 13 14 4.6524 10.1160 -0.0061 14 1 4.9514 10.5089 -1.4067 15 1 3.9905 11.2459 0.6944 16 1 5.9171 9.7731 0.6926 17 6 4.0604 2.5174 -0.0011 18 8 5.4185 2.5897 -0.0011 19 6 6.1340 1.3527 -0.0011 20 6 3.4315 1.2834 -0.0058 21 1 -0.3633 -1.0276 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.2121 2.3163 -0.0005 25 1 1.3245 4.5117 -0.0019 26 1 4.9021 4.9881 -0.0035 27 1 2.5031 6.1848 -0.8922 28 1 2.5045 6.1857 0.8877 29 1 1.8409 9.6967 -0.0023 30 1 7.2055 1.5527 -0.0015 31 1 5.8712 0.7809 -0.8911 32 1 5.8712 0.7809 0.8890 33 1 4.0194 0.3774 -0.0099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032010650.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:43:45 Heat of formation + Delta-G solvation = -70.306354 kcal Electronic energy + Delta-G solvation = -16369.987836 eV Core-core repulsion = 13588.622160 eV Total energy + Delta-G solvation = -2781.365675 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.36738 -39.72354 -38.05557 -36.02857 -34.38121 -31.33147 -30.64487 -28.49489 -27.98750 -27.21571 -24.85848 -22.78972 -22.23600 -19.73567 -18.93456 -17.71753 -17.28669 -17.11308 -16.77235 -16.53118 -16.27276 -15.70298 -15.14933 -15.07506 -14.86780 -14.07539 -13.70676 -13.54565 -13.47348 -13.01399 -12.78623 -12.74054 -12.35646 -12.34624 -12.19537 -11.70483 -11.68443 -11.40900 -10.79723 -10.24686 -9.48876 -8.29268 -7.74684 -6.42357 0.40395 0.71775 1.41334 1.42965 1.54334 2.32596 2.35604 2.56552 2.88324 2.99038 3.05874 3.89910 4.13781 4.29084 4.34025 4.46401 4.48375 4.53886 4.63283 4.70223 4.77550 4.83346 4.94038 5.03877 5.30208 5.33386 5.48051 5.54063 5.65139 5.91077 6.33379 6.49682 6.59067 6.83623 7.20395 7.31902 8.82705 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.030589 B = 0.005678 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.130120 B = 4930.036761 C = 5819.416829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.332 6.332 3 C 0.088 3.912 4 C -0.185 4.185 5 C -0.153 4.153 6 C 0.148 3.852 7 N -0.737 5.737 8 C 0.275 3.725 9 C -0.557 4.557 10 H 0.066 0.934 11 C 0.010 3.990 12 N -0.926 5.926 13 Si 0.978 3.022 14 H -0.271 1.271 15 H -0.279 1.279 16 H -0.264 1.264 17 C 0.076 3.924 18 O -0.336 6.336 19 C 0.022 3.978 20 C -0.192 4.192 21 H 0.122 0.878 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.147 0.853 25 H 0.115 0.885 26 H 0.396 0.604 27 H -0.009 1.009 28 H -0.009 1.009 29 H 0.269 0.731 30 H 0.117 0.883 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.826 -16.719 -0.004 16.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.246 6.246 3 C 0.041 3.959 4 C -0.204 4.204 5 C -0.177 4.177 6 C 0.044 3.956 7 N -0.366 5.366 8 C 0.152 3.848 9 C -0.595 4.595 10 H 0.085 0.915 11 C -0.189 4.189 12 N -0.565 5.565 13 Si 0.801 3.199 14 H -0.196 1.196 15 H -0.204 1.204 16 H -0.188 1.188 17 C 0.027 3.973 18 O -0.250 6.250 19 C -0.072 4.072 20 C -0.212 4.212 21 H 0.140 0.860 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.165 0.835 25 H 0.133 0.867 26 H 0.230 0.770 27 H 0.009 0.991 28 H 0.009 0.991 29 H 0.078 0.922 30 H 0.136 0.864 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 0.758 -16.453 0.001 16.470 hybrid contribution 0.255 0.994 -0.009 1.027 sum 1.014 -15.459 -0.008 15.492 Atomic orbital electron populations 1.23273 0.76970 1.05307 1.01879 1.85978 1.22932 1.26042 1.89683 1.18418 0.91547 0.84400 1.01512 1.21035 1.00650 0.90703 1.08015 1.20382 0.91737 0.98392 1.07190 1.17702 0.91967 0.84824 1.01134 1.44964 1.08323 1.02104 1.81224 1.18533 0.91109 0.81427 0.93688 1.21576 0.93731 0.91542 1.52620 0.91548 1.25897 0.96861 1.02248 0.93934 1.70072 1.12453 1.23752 1.50225 0.85265 0.78502 0.77543 0.78576 1.19625 1.20378 1.18829 1.18136 0.82959 0.91747 1.04471 1.86014 1.14637 1.34744 1.89615 1.23298 0.97229 0.84542 1.02140 1.20255 0.92886 0.96555 1.11459 0.85968 0.92329 0.92324 0.83510 0.86699 0.77012 0.99136 0.99122 0.92197 0.86435 0.91799 0.91799 0.82763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.81 113.37 1.11 1.47 16 2 O -0.33 -8.77 10.50 -93.44 -0.98 -9.75 16 3 C 0.09 2.73 6.68 22.49 0.15 2.89 16 4 C -0.18 -6.04 9.03 22.38 0.20 -5.84 16 5 C -0.15 -6.15 9.31 22.37 0.21 -5.94 16 6 C 0.15 6.28 6.67 38.15 0.25 6.53 16 7 N -0.74 -34.96 5.73 -342.51 -1.96 -36.93 16 8 C 0.28 15.17 4.67 85.63 0.40 15.57 16 9 C -0.56 -31.77 9.28 25.60 0.24 -31.54 16 10 H 0.07 3.64 7.60 -2.91 -0.02 3.62 16 11 C 0.01 0.58 5.46 84.66 0.46 1.04 16 12 N -0.93 -55.11 13.29 21.45 0.28 -54.82 16 13 Si 0.98 43.63 29.54 68.60 2.03 45.65 16 14 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 15 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 16 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 17 C 0.08 2.74 6.70 22.58 0.15 2.89 16 18 O -0.34 -11.09 9.74 -93.57 -0.91 -12.00 16 19 C 0.02 0.47 9.81 113.37 1.11 1.58 16 20 C -0.19 -5.98 8.97 22.44 0.20 -5.78 16 21 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 22 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 23 H 0.06 0.99 7.66 -2.39 -0.02 0.97 16 24 H 0.15 3.91 6.28 -2.91 -0.02 3.89 16 25 H 0.12 4.98 6.73 -2.91 -0.02 4.96 16 26 H 0.40 18.20 7.68 -92.71 -0.71 17.49 16 27 H -0.01 -0.54 7.95 -2.38 -0.02 -0.56 16 28 H -0.01 -0.53 7.96 -2.39 -0.02 -0.55 16 29 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 30 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.06 1.18 7.65 -2.39 -0.02 1.17 16 32 H 0.06 1.19 7.67 -2.38 -0.02 1.17 16 33 H 0.15 3.88 6.30 -2.91 -0.02 3.86 16 Total: -1.00 -66.86 282.25 3.36 -63.50 By element: Atomic # 1 Polarization: 21.06 SS G_CDS: 0.41 Total: 21.47 kcal Atomic # 6 Polarization: -21.61 SS G_CDS: 4.49 Total: -17.12 kcal Atomic # 7 Polarization: -90.07 SS G_CDS: -1.68 Total: -91.75 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -1.89 Total: -21.75 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.65 kcal Total: -66.86 3.36 -63.50 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032010650.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.807 kcal (2) G-P(sol) polarization free energy of solvation -66.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds