Wall clock time and date at job start Sun Mar 29 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47104 * 2 1 4 4 C 1.37094 * 120.00405 * 264.75131 * 3 2 1 5 5 H 1.08003 * 120.00882 * 146.16641 * 4 3 2 6 6 C 1.38954 * 119.99850 * 326.16895 * 4 3 2 7 7 N 1.31415 * 119.99697 * 337.68578 * 6 4 3 8 8 Si 1.86801 * 120.00082 * 157.68124 * 6 4 3 9 9 H 1.48498 * 109.47216 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47015 * 120.00063 * 8 6 4 11 11 H 1.48498 * 109.46957 * 239.99889 * 8 6 4 12 12 C 1.34781 * 119.99935 * 84.75112 * 3 2 1 13 13 O 1.21293 * 119.99807 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99842 * 359.97438 * 12 3 2 15 15 C 1.53003 * 109.47015 * 179.97438 * 14 12 3 16 16 C 1.50698 * 109.47015 * 180.02562 * 15 14 12 17 17 C 1.34511 * 125.78542 * 90.00751 * 16 15 14 18 18 C 1.41388 * 106.84027 * 180.02562 * 17 16 15 19 19 C 1.34514 * 106.83748 * 359.97438 * 18 17 16 20 20 O 1.34301 * 108.42605 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46999 * 299.99988 * 1 2 3 23 23 H 1.08994 * 109.47239 * 59.99546 * 1 2 3 24 24 H 1.09003 * 109.46393 * 240.00407 * 2 1 3 25 25 H 1.08994 * 109.47239 * 120.00454 * 2 1 3 26 26 H 0.97005 * 119.99758 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46854 * 60.00719 * 14 12 3 28 28 H 1.08998 * 109.47315 * 299.99896 * 14 12 3 29 29 H 1.09008 * 109.46723 * 60.00529 * 15 14 12 30 30 H 1.08988 * 109.47501 * 300.00825 * 15 14 12 31 31 H 1.07994 * 126.58407 * 359.97438 * 17 16 15 32 32 H 1.07996 * 126.58179 * 180.02562 * 18 17 16 33 33 H 1.08004 * 125.78549 * 180.26601 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3493 1.9913 -1.1822 5 1 2.1815 3.0507 -1.3088 6 6 2.9005 1.2467 -2.2179 7 7 3.5050 0.1088 -1.9595 8 14 2.7823 1.8631 -3.9772 9 1 2.0590 3.1599 -3.9999 10 1 4.1483 2.0491 -4.5294 11 1 2.0463 0.8707 -4.8010 12 6 2.1423 2.0521 1.1623 13 8 2.5471 3.1955 1.1624 14 6 1.7780 1.3816 2.4619 15 6 2.0098 2.3542 3.6200 16 6 1.6462 1.6835 4.9196 17 6 2.4807 0.9710 5.6975 18 6 1.7269 0.5278 6.8086 19 6 0.4770 0.9966 6.6434 20 8 0.4338 1.6958 5.4975 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.8902 -0.4109 -2.6824 27 1 2.3995 0.4970 2.6010 28 1 0.7285 1.0884 2.4378 29 1 1.3887 3.2392 3.4812 30 1 3.0593 2.6472 3.6440 31 1 3.5257 0.7743 5.5092 32 1 2.0859 -0.0713 7.6323 33 1 -0.3506 0.8408 7.3197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045049464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:10 Heat of formation + Delta-G solvation = -24.660284 kcal Electronic energy + Delta-G solvation = -16642.214343 eV Core-core repulsion = 13862.828030 eV Total energy + Delta-G solvation = -2779.386313 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -42.40458 -38.60697 -35.11890 -33.56149 -32.60801 -31.91769 -29.44288 -28.57046 -25.43331 -23.52278 -22.13216 -21.60383 -20.20567 -18.69067 -17.27598 -16.73698 -15.92782 -15.72901 -15.13462 -14.54212 -14.17176 -14.06539 -13.01944 -12.82265 -12.79191 -12.68791 -12.52281 -12.01543 -11.72599 -11.54409 -11.49634 -11.06674 -10.88886 -10.68957 -10.30529 -10.25460 -10.03513 -9.80048 -8.94265 -8.50840 -8.19568 -7.48184 -6.32415 -3.92996 1.87467 2.74325 3.15459 3.15991 3.27192 3.34019 3.92441 4.16790 4.74206 4.98387 5.06304 5.14151 5.22030 5.51579 5.56709 5.76452 5.87119 5.94554 5.98425 6.10989 6.21194 6.26390 6.31273 6.41977 6.49057 6.57541 6.66843 6.90892 7.28768 7.30704 7.60901 8.25705 8.52186 9.19974 9.43649 10.02937 10.71323 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047503 B = 0.005417 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.295288 B = 5167.972599 C = 5328.554599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.094 3.906 3 N -0.440 5.440 4 C -0.306 4.306 5 H 0.093 0.907 6 C 0.034 3.966 7 N -0.870 5.870 8 Si 0.916 3.084 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.280 1.280 12 C 0.457 3.543 13 O -0.586 6.586 14 C -0.130 4.130 15 C -0.024 4.024 16 C 0.006 3.994 17 C -0.220 4.220 18 C -0.212 4.212 19 C -0.056 4.056 20 O -0.177 6.177 21 H 0.050 0.950 22 H 0.042 0.958 23 H 0.056 0.944 24 H 0.113 0.887 25 H 0.048 0.952 26 H 0.267 0.733 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.100 0.900 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.214 -3.188 11.222 12.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.030 4.030 3 N -0.159 5.159 4 C -0.434 4.434 5 H 0.110 0.890 6 C -0.169 4.169 7 N -0.508 5.508 8 Si 0.743 3.257 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.206 1.206 12 C 0.245 3.755 13 O -0.470 6.470 14 C -0.170 4.170 15 C -0.061 4.061 16 C -0.044 4.044 17 C -0.239 4.239 18 C -0.232 4.232 19 C -0.123 4.123 20 O -0.073 6.073 21 H 0.069 0.931 22 H 0.061 0.939 23 H 0.075 0.925 24 H 0.131 0.869 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.102 0.898 28 H 0.098 0.902 29 H 0.104 0.896 30 H 0.118 0.882 31 H 0.165 0.835 32 H 0.162 0.838 33 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.168 -2.631 10.963 12.403 hybrid contribution 0.101 -0.250 -0.596 0.654 sum -5.067 -2.882 10.367 11.894 Atomic orbital electron populations 1.22210 0.98253 1.00334 1.01488 1.21601 0.91716 0.85511 1.04149 1.43537 1.55529 1.11855 1.04945 1.19516 1.39579 0.95487 0.88831 0.88960 1.25330 0.94566 0.96501 1.00528 1.69936 1.32769 1.15357 1.32778 0.86029 0.78117 0.79113 0.82429 1.19178 1.20798 1.20620 1.20204 0.82553 0.87927 0.84790 1.90516 1.50779 1.18803 1.86918 1.21628 1.02801 0.99154 0.93424 1.19913 1.03427 0.97521 0.85279 1.22812 0.82370 1.01877 0.97340 1.21613 1.01355 1.04461 0.96521 1.21800 0.94129 1.05988 1.01253 1.23938 0.99740 0.99535 0.89110 1.84037 1.33184 1.58587 1.31478 0.93119 0.93889 0.92459 0.86894 0.93370 0.92304 0.89841 0.90171 0.89618 0.88204 0.83524 0.83789 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.01 10.15 37.16 0.38 -2.63 16 2 C 0.09 2.06 5.43 -4.04 -0.02 2.04 16 3 N -0.44 -11.17 2.56 -114.81 -0.29 -11.46 16 4 C -0.31 -8.52 8.98 -14.93 -0.13 -8.65 16 5 H 0.09 2.70 7.70 -52.48 -0.40 2.29 16 6 C 0.03 0.91 4.92 -17.46 -0.09 0.82 16 7 N -0.87 -23.39 11.33 55.50 0.63 -22.76 16 8 Si 0.92 20.56 29.61 -169.99 -5.03 15.53 16 9 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 10 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 12 C 0.46 11.13 7.59 -10.98 -0.08 11.04 16 13 O -0.59 -16.18 15.81 5.55 0.09 -16.09 16 14 C -0.13 -2.42 4.29 -27.88 -0.12 -2.54 16 15 C -0.02 -0.40 5.04 -27.88 -0.14 -0.55 16 16 C 0.01 0.10 6.57 -35.63 -0.23 -0.14 16 17 C -0.22 -3.11 10.81 -39.70 -0.43 -3.53 16 18 C -0.21 -2.58 10.91 -39.70 -0.43 -3.02 16 19 C -0.06 -0.66 12.09 29.42 0.36 -0.30 16 20 O -0.18 -2.65 10.65 5.70 0.06 -2.59 16 21 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 22 H 0.04 0.74 6.59 -51.93 -0.34 0.40 16 23 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.11 2.73 5.34 -51.93 -0.28 2.45 16 25 H 0.05 0.96 6.66 -51.93 -0.35 0.62 16 26 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 27 H 0.08 1.48 7.41 -51.93 -0.38 1.09 16 28 H 0.08 1.40 6.53 -51.93 -0.34 1.06 16 29 H 0.09 1.50 8.10 -51.92 -0.42 1.08 16 30 H 0.10 1.70 8.10 -51.94 -0.42 1.28 16 31 H 0.15 1.88 8.06 -52.49 -0.42 1.45 16 32 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 33 H 0.20 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 283.26 15.07 4.27 4.27 Total: -1.00 -31.23 283.26 -5.41 -36.65 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.18 Total: 3.92 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -0.95 Total: -7.46 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.34 Total: -34.23 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.15 Total: -18.68 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.03 Total: 15.53 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -31.23 -5.41 -36.65 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.987 kcal (2) G-P(sol) polarization free energy of solvation -31.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds