Wall clock time and date at job start Sun Mar 29 2020 21:40:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46492 * 109.47104 * 2 1 4 4 C 1.37094 * 120.00405 * 264.75131 * 3 2 1 5 5 H 1.08003 * 120.00882 * 146.16641 * 4 3 2 6 6 C 1.38954 * 119.99850 * 326.16895 * 4 3 2 7 7 N 1.31415 * 119.99697 * 337.68578 * 6 4 3 8 8 Si 1.86801 * 120.00082 * 157.68124 * 6 4 3 9 9 H 1.48498 * 109.47216 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.47015 * 120.00063 * 8 6 4 11 11 H 1.48498 * 109.46957 * 239.99889 * 8 6 4 12 12 C 1.34781 * 119.99935 * 84.75112 * 3 2 1 13 13 O 1.21293 * 119.99807 * 179.97438 * 12 3 2 14 14 C 1.50698 * 119.99842 * 359.97438 * 12 3 2 15 15 C 1.53003 * 109.47015 * 179.97438 * 14 12 3 16 16 C 1.50698 * 109.47015 * 180.02562 * 15 14 12 17 17 C 1.34511 * 125.78542 * 90.00751 * 16 15 14 18 18 C 1.41388 * 106.84027 * 180.02562 * 17 16 15 19 19 C 1.34514 * 106.83748 * 359.97438 * 18 17 16 20 20 O 1.34301 * 108.42605 * 0.02562 * 19 18 17 21 21 H 1.09001 * 109.47070 * 179.97438 * 1 2 3 22 22 H 1.09007 * 109.46999 * 299.99988 * 1 2 3 23 23 H 1.08994 * 109.47239 * 59.99546 * 1 2 3 24 24 H 1.09003 * 109.46393 * 240.00407 * 2 1 3 25 25 H 1.08994 * 109.47239 * 120.00454 * 2 1 3 26 26 H 0.97005 * 119.99758 * 180.02562 * 7 6 4 27 27 H 1.09003 * 109.46854 * 60.00719 * 14 12 3 28 28 H 1.08998 * 109.47315 * 299.99896 * 14 12 3 29 29 H 1.09008 * 109.46723 * 60.00529 * 15 14 12 30 30 H 1.08988 * 109.47501 * 300.00825 * 15 14 12 31 31 H 1.07994 * 126.58407 * 359.97438 * 17 16 15 32 32 H 1.07996 * 126.58179 * 180.02562 * 18 17 16 33 33 H 1.08004 * 125.78549 * 180.26601 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3493 1.9913 -1.1822 5 1 2.1815 3.0507 -1.3088 6 6 2.9005 1.2467 -2.2179 7 7 3.5050 0.1088 -1.9595 8 14 2.7823 1.8631 -3.9772 9 1 2.0590 3.1599 -3.9999 10 1 4.1483 2.0491 -4.5294 11 1 2.0463 0.8707 -4.8010 12 6 2.1423 2.0521 1.1623 13 8 2.5471 3.1955 1.1624 14 6 1.7780 1.3816 2.4619 15 6 2.0098 2.3542 3.6200 16 6 1.6462 1.6835 4.9196 17 6 2.4807 0.9710 5.6975 18 6 1.7269 0.5278 6.8086 19 6 0.4770 0.9966 6.6434 20 8 0.4338 1.6958 5.4975 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5139 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 3.8902 -0.4109 -2.6824 27 1 2.3995 0.4970 2.6010 28 1 0.7285 1.0884 2.4378 29 1 1.3887 3.2392 3.4812 30 1 3.0593 2.6472 3.6440 31 1 3.5257 0.7743 5.5092 32 1 2.0859 -0.0713 7.6323 33 1 -0.3506 0.8408 7.3197 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045049464.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:40:10 Heat of formation + Delta-G solvation = -43.452535 kcal Electronic energy + Delta-G solvation = -16643.029236 eV Core-core repulsion = 13862.828030 eV Total energy + Delta-G solvation = -2780.201206 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -43.44009 -40.48710 -37.01987 -34.99570 -33.97223 -33.56727 -31.18157 -29.84957 -27.20838 -25.08759 -23.81304 -22.60708 -21.32819 -20.49358 -18.79784 -18.33324 -17.50614 -17.04934 -16.81278 -16.25163 -15.94398 -15.34565 -14.64965 -14.47989 -14.41142 -13.68886 -13.65508 -13.49452 -13.31766 -13.19245 -13.02149 -12.82868 -12.61757 -12.28339 -12.08332 -12.02224 -11.72695 -10.89818 -10.80949 -10.38435 -9.47047 -9.32829 -8.34352 -6.03574 0.83685 1.36205 1.42302 1.56078 1.75300 2.03592 2.13172 2.31545 3.01461 3.10800 3.77299 4.02309 4.09790 4.20734 4.22996 4.30616 4.37226 4.59192 4.65692 4.76750 4.89790 4.98797 5.02280 5.07140 5.12391 5.28075 5.31587 5.46808 5.58411 5.67506 6.20842 6.27525 6.53419 7.18236 7.48536 8.07336 8.68023 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047503 B = 0.005417 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 589.295288 B = 5167.972599 C = 5328.554599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.092 3.908 3 N -0.453 5.453 4 C -0.343 4.343 5 H 0.064 0.936 6 C 0.004 3.996 7 N -0.888 5.888 8 Si 0.981 3.019 9 H -0.272 1.272 10 H -0.278 1.278 11 H -0.263 1.263 12 C 0.443 3.557 13 O -0.631 6.631 14 C -0.112 4.112 15 C -0.014 4.014 16 C -0.023 4.023 17 C -0.219 4.219 18 C -0.223 4.223 19 C -0.045 4.045 20 O -0.194 6.194 21 H 0.084 0.916 22 H 0.053 0.947 23 H 0.041 0.959 24 H 0.091 0.909 25 H 0.066 0.934 26 H 0.274 0.726 27 H 0.096 0.904 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.154 0.846 32 H 0.172 0.828 33 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.170 -4.789 12.279 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.031 4.031 3 N -0.171 5.171 4 C -0.471 4.471 5 H 0.081 0.919 6 C -0.199 4.199 7 N -0.526 5.526 8 Si 0.804 3.196 9 H -0.197 1.197 10 H -0.204 1.204 11 H -0.188 1.188 12 C 0.233 3.767 13 O -0.518 6.518 14 C -0.152 4.152 15 C -0.052 4.052 16 C -0.073 4.073 17 C -0.238 4.238 18 C -0.242 4.242 19 C -0.111 4.111 20 O -0.091 6.091 21 H 0.103 0.897 22 H 0.072 0.928 23 H 0.060 0.940 24 H 0.109 0.891 25 H 0.084 0.916 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.109 0.891 31 H 0.172 0.828 32 H 0.190 0.810 33 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -6.131 -4.272 12.026 14.159 hybrid contribution 0.420 0.213 -0.843 0.966 sum -5.711 -4.060 11.183 13.197 Atomic orbital electron populations 1.22105 0.95414 1.02465 1.01241 1.21709 0.94038 0.83500 1.03835 1.43830 1.55527 1.13084 1.04684 1.19445 1.41835 0.94869 0.90957 0.91854 1.26057 0.93491 0.96558 1.03776 1.69994 1.32459 1.15964 1.34167 0.85084 0.78165 0.78669 0.77650 1.19678 1.20395 1.18774 1.21153 0.81631 0.87576 0.86366 1.90472 1.52665 1.20861 1.87826 1.21505 1.03792 0.99233 0.90689 1.19647 1.02719 0.96825 0.86012 1.22413 0.83356 1.03971 0.97522 1.21905 1.01737 1.03386 0.96813 1.22162 0.94040 1.06507 1.01471 1.24855 1.01033 0.97260 0.87977 1.84018 1.32935 1.59443 1.32733 0.89713 0.92848 0.93988 0.89139 0.91586 0.91616 0.88562 0.88508 0.90937 0.89108 0.82842 0.81022 0.74351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.40 10.15 71.98 0.73 -4.67 16 2 C 0.09 3.99 5.43 86.38 0.47 4.46 16 3 N -0.45 -23.47 2.56 -635.54 -1.63 -25.10 16 4 C -0.34 -19.70 8.98 84.04 0.75 -18.94 16 5 H 0.06 3.91 7.70 -2.91 -0.02 3.89 16 6 C 0.00 0.19 4.92 84.93 0.42 0.61 16 7 N -0.89 -47.80 11.33 21.66 0.25 -47.56 16 8 Si 0.98 42.41 29.61 68.60 2.03 44.44 16 9 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 10 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 11 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 12 C 0.44 22.11 7.59 87.66 0.67 22.78 16 13 O -0.63 -36.43 15.81 -3.07 -0.05 -36.48 16 14 C -0.11 -4.16 4.29 29.85 0.13 -4.03 16 15 C -0.01 -0.49 5.04 29.85 0.15 -0.34 16 16 C -0.02 -0.69 6.57 24.83 0.16 -0.52 16 17 C -0.22 -5.78 10.81 22.19 0.24 -5.54 16 18 C -0.22 -4.71 10.91 22.19 0.24 -4.47 16 19 C -0.04 -0.90 12.09 66.97 0.81 -0.10 16 20 O -0.19 -5.46 10.65 -2.51 -0.03 -5.49 16 21 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 22 H 0.05 1.74 6.59 -2.38 -0.02 1.72 16 23 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 24 H 0.09 4.35 5.34 -2.39 -0.01 4.34 16 25 H 0.07 2.55 6.66 -2.39 -0.02 2.54 16 26 H 0.27 13.67 8.31 -92.70 -0.77 12.90 16 27 H 0.10 3.31 7.41 -2.39 -0.02 3.29 16 28 H 0.10 3.25 6.53 -2.39 -0.02 3.24 16 29 H 0.07 2.63 8.10 -2.38 -0.02 2.61 16 30 H 0.09 3.21 8.10 -2.39 -0.02 3.19 16 31 H 0.15 3.70 8.06 -2.91 -0.02 3.68 16 32 H 0.17 2.57 8.06 -2.91 -0.02 2.55 16 33 H 0.24 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -69.26 283.26 6.45 -62.81 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 1.10 Total: 18.14 kcal Atomic # 6 Polarization: -15.54 SS G_CDS: 4.77 Total: -10.77 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.38 Total: -72.65 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -0.08 Total: -41.97 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -69.26 6.45 -62.81 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045049464.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.362 kcal (2) G-P(sol) polarization free energy of solvation -69.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds