Wall clock time and date at job start Sun Mar 29 2020 22:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.34952 * 126.12486 * 2 1 4 4 H 0.97005 * 126.03630 * 359.97438 * 3 2 1 5 5 N 1.40088 * 107.92595 * 180.23859 * 3 2 1 6 6 C 1.30837 * 108.20329 * 359.75884 * 5 3 2 7 7 C 1.35316 * 126.13167 * 179.82248 * 2 1 3 8 8 C 1.50697 * 126.03627 * 0.02600 * 7 2 1 9 9 C 1.52997 * 109.47466 * 84.71465 * 8 7 2 10 10 C 1.53000 * 109.47060 * 180.02562 * 9 8 7 11 11 N 1.46499 * 109.46840 * 180.02562 * 10 9 8 12 12 C 1.34779 * 119.99872 * 179.97438 * 11 10 9 13 13 O 1.21684 * 119.99938 * 359.97438 * 12 11 10 14 14 C 1.46375 * 119.99969 * 180.02562 * 12 11 10 15 15 H 1.08003 * 120.00289 * 359.97438 * 14 12 11 16 16 C 1.40045 * 120.00118 * 179.97438 * 14 12 11 17 17 N 1.30673 * 119.99924 * 359.97438 * 16 14 12 18 18 Si 1.86803 * 120.00047 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47371 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46979 * 120.00015 * 18 16 14 21 21 H 1.48504 * 109.47204 * 239.99727 * 18 16 14 22 22 H 1.08997 * 109.47560 * 270.17389 * 1 2 3 23 23 H 1.09000 * 109.47444 * 30.18004 * 1 2 3 24 24 H 1.09001 * 109.47111 * 150.17672 * 1 2 3 25 25 H 1.08004 * 125.89881 * 180.02562 * 6 5 3 26 26 H 1.09002 * 109.47120 * 324.71218 * 8 7 2 27 27 H 1.08998 * 109.46862 * 204.72020 * 8 7 2 28 28 H 1.09002 * 109.47153 * 59.99773 * 9 8 7 29 29 H 1.09001 * 109.46832 * 299.99964 * 9 8 7 30 30 H 1.09001 * 109.47194 * 299.99650 * 10 9 8 31 31 H 1.08992 * 109.47399 * 59.99823 * 10 9 8 32 32 H 0.97005 * 120.00448 * 359.97438 * 11 10 9 33 33 H 0.96996 * 119.99816 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3026 1.0901 0.0000 4 1 2.0054 2.0135 -0.0004 5 7 3.6334 0.6525 -0.0056 6 6 3.6335 -0.6558 -0.0035 7 6 2.3048 -1.0929 0.0034 8 6 1.8434 -2.5275 0.0073 9 6 1.5612 -2.9764 -1.4279 10 6 1.0921 -4.4327 -1.4238 11 7 0.8225 -4.8627 -2.7980 12 6 0.3953 -6.1179 -3.0398 13 8 0.2340 -6.8941 -2.1167 14 6 0.1265 -6.5478 -4.4130 15 1 0.2700 -5.8590 -5.2324 16 6 -0.3169 -7.8522 -4.6643 17 7 -0.4901 -8.6858 -3.6730 18 14 -0.6606 -8.4006 -6.4166 19 1 -0.3881 -7.2776 -7.3492 20 1 0.2164 -9.5497 -6.7567 21 1 -2.0828 -8.8106 -6.5370 22 1 -0.3634 0.0031 1.0276 23 1 -0.3634 0.8883 -0.5166 24 1 -0.3633 -0.8916 -0.5111 25 1 4.5084 -1.2890 -0.0063 26 1 0.9333 -2.6148 0.6009 27 1 2.6206 -3.1579 0.4391 28 1 2.4712 -2.8891 -2.0215 29 1 0.7839 -2.3459 -1.8596 30 1 1.8690 -5.0635 -0.9919 31 1 0.1820 -4.5196 -0.8303 32 1 0.9514 -4.2441 -3.5340 33 1 -0.7968 -9.5894 -3.8471 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050183442.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:55 Heat of formation + Delta-G solvation = 11.342149 kcal Electronic energy + Delta-G solvation = -15880.507673 eV Core-core repulsion = 13134.975293 eV Total energy + Delta-G solvation = -2745.532380 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -41.36601 -37.34251 -35.07195 -32.85743 -32.57630 -32.08385 -29.88462 -27.56371 -26.27356 -24.39756 -21.90338 -21.33188 -19.74855 -19.17017 -17.30263 -17.05329 -15.28813 -15.07329 -15.03433 -14.47444 -14.33203 -13.92274 -13.54437 -12.99535 -12.98772 -12.54605 -12.30424 -12.11157 -11.98605 -11.44441 -11.05642 -11.02461 -10.86432 -10.58192 -10.38959 -10.27348 -10.14908 -9.61070 -8.81959 -8.41644 -7.55111 -7.41580 -6.14222 -4.59304 1.75256 2.69672 2.76282 3.15488 3.23544 3.28151 4.14397 4.57864 4.64041 4.70477 4.90809 4.93567 5.19469 5.28303 5.36176 5.57121 5.67688 5.74706 5.79943 5.87260 5.94998 6.06919 6.25813 6.31199 6.58607 6.72410 6.73104 7.15621 7.47646 7.56634 7.99935 8.18443 8.39046 9.07063 9.60990 10.65202 10.84505 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.051352 B = 0.003892 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 545.128526 B = 7192.572233 C = 7256.435327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.086 3.914 3 N -0.481 5.481 4 H 0.435 0.565 5 N -0.302 5.302 6 C 0.058 3.942 7 C -0.227 4.227 8 C -0.039 4.039 9 C -0.121 4.121 10 C 0.132 3.868 11 N -0.769 5.769 12 C 0.553 3.447 13 O -0.582 6.582 14 C -0.546 4.546 15 H 0.067 0.933 16 C 0.087 3.913 17 N -0.769 5.769 18 Si 0.907 3.093 19 H -0.264 1.264 20 H -0.276 1.276 21 H -0.277 1.277 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.091 0.909 25 H 0.183 0.817 26 H 0.069 0.931 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.060 0.940 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.379 0.621 33 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.621 16.860 5.501 17.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.042 4.042 3 N -0.190 5.190 4 H 0.278 0.722 5 N -0.124 5.124 6 C -0.129 4.129 7 C -0.239 4.239 8 C -0.078 4.078 9 C -0.159 4.159 10 C 0.007 3.993 11 N -0.425 5.425 12 C 0.357 3.643 13 O -0.465 6.465 14 C -0.584 4.584 15 H 0.085 0.915 16 C -0.132 4.132 17 N -0.398 5.398 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.202 1.202 21 H -0.202 1.202 22 H 0.098 0.902 23 H 0.088 0.912 24 H 0.110 0.890 25 H 0.200 0.800 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.210 0.790 33 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.187 17.122 6.266 18.509 hybrid contribution -0.662 -0.151 -1.238 1.412 sum 2.525 16.971 5.028 17.880 Atomic orbital electron populations 1.20504 0.87225 1.04258 1.03425 1.20928 0.94499 0.87495 1.01321 1.46235 1.04244 1.08070 1.60408 0.72206 1.77299 0.96546 1.13291 1.25225 1.23836 0.97961 0.91935 0.99148 1.19947 0.92224 0.95924 1.15770 1.19832 1.01252 0.89769 0.96926 1.21775 1.01340 0.96366 0.96451 1.20887 0.99219 0.92453 0.86770 1.46132 1.75049 1.15491 1.05797 1.18223 0.76610 0.79030 0.90430 1.90591 1.56686 1.52744 1.46504 1.20941 1.47891 0.97871 0.91651 0.91454 1.25710 0.93236 0.96271 0.98004 1.70037 1.33198 1.04891 1.31677 0.86336 0.78349 0.79081 0.83080 1.18818 1.20193 1.20202 0.90169 0.91232 0.88983 0.80043 0.91283 0.90895 0.91836 0.92126 0.93504 0.93581 0.78974 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.72 10.12 36.00 0.36 -0.36 16 2 C 0.09 0.88 7.21 -82.26 -0.59 0.29 16 3 N -0.48 -4.87 7.36 33.48 0.25 -4.62 16 4 H 0.43 3.00 8.96 -182.60 -1.64 1.36 16 5 N -0.30 -3.79 12.70 30.63 0.39 -3.40 16 6 C 0.06 0.68 11.96 -17.37 -0.21 0.47 16 7 C -0.23 -2.65 5.35 -105.05 -0.56 -3.22 16 8 C -0.04 -0.46 5.25 -27.89 -0.15 -0.60 16 9 C -0.12 -1.68 5.31 -26.73 -0.14 -1.82 16 10 C 0.13 2.50 5.67 -4.04 -0.02 2.48 16 11 N -0.77 -17.43 5.55 -61.72 -0.34 -17.78 16 12 C 0.55 16.04 7.75 -12.99 -0.10 15.94 16 13 O -0.58 -19.20 15.02 5.20 0.08 -19.12 16 14 C -0.55 -15.67 9.54 -35.63 -0.34 -16.00 16 15 H 0.07 1.77 7.85 -52.48 -0.41 1.36 16 16 C 0.09 2.46 5.50 -17.37 -0.10 2.37 16 17 N -0.77 -23.35 11.83 55.55 0.66 -22.70 16 18 Si 0.91 20.29 29.56 -169.99 -5.02 15.27 16 19 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 21 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 22 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 24 H 0.09 0.76 7.47 -51.93 -0.39 0.37 16 25 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 26 H 0.07 0.78 8.02 -51.93 -0.42 0.36 16 27 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 0.81 7.73 -51.93 -0.40 0.40 16 30 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 31 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.38 7.55 8.45 -40.82 -0.35 7.21 16 33 H 0.27 7.31 8.29 -40.82 -0.34 6.98 16 LS Contribution 290.69 15.07 4.38 4.38 Total: -1.00 -36.57 290.69 -7.16 -43.73 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -5.69 Total: 4.69 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.85 Total: -0.45 kcal Atomic # 7 Polarization: -49.44 SS G_CDS: 0.95 Total: -48.49 kcal Atomic # 8 Polarization: -19.20 SS G_CDS: 0.08 Total: -19.12 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -36.57 -7.16 -43.73 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050183442.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.071 kcal (2) G-P(sol) polarization free energy of solvation -36.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds