Wall clock time and date at job start Sun Mar 29 2020 21:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46858 * 2 1 4 4 C 1.50703 * 109.47109 * 119.99901 * 2 1 3 5 5 H 1.07989 * 119.99917 * 85.87464 * 4 2 1 6 6 C 1.37877 * 119.99665 * 265.87433 * 4 2 1 7 7 N 1.31518 * 119.99718 * 177.64134 * 6 4 2 8 8 Si 1.86798 * 120.00409 * 357.63523 * 6 4 2 9 9 H 1.48496 * 109.47284 * 274.92510 * 8 6 4 10 10 H 1.48504 * 109.47089 * 34.92555 * 8 6 4 11 11 H 1.48500 * 109.46809 * 154.92189 * 8 6 4 12 12 N 1.46493 * 109.47181 * 240.00037 * 2 1 3 13 13 C 1.34777 * 120.00036 * 84.99862 * 12 2 1 14 14 O 1.21276 * 120.00272 * 0.02562 * 13 12 2 15 15 C 1.50698 * 119.99939 * 179.97438 * 13 12 2 16 16 C 1.52999 * 109.47301 * 179.97438 * 15 13 12 17 17 C 1.50696 * 109.47646 * 180.02562 * 16 15 13 18 18 C 1.34518 * 125.78865 * 89.99593 * 17 16 15 19 19 C 1.41388 * 106.83922 * 180.02562 * 18 17 16 20 20 C 1.34508 * 106.84094 * 0.02562 * 19 18 17 21 21 O 1.34302 * 125.79129 * 269.69924 * 17 16 15 22 22 H 1.08996 * 109.47554 * 56.13746 * 1 2 3 23 23 H 1.09000 * 109.47220 * 176.13458 * 1 2 3 24 24 H 1.09000 * 109.47341 * 296.13363 * 1 2 3 25 25 H 0.96999 * 119.99984 * 180.02562 * 7 6 4 26 26 H 0.96997 * 119.99861 * 264.99760 * 12 2 1 27 27 H 1.08993 * 109.47825 * 300.00212 * 15 13 12 28 28 H 1.08999 * 109.47071 * 60.00434 * 15 13 12 29 29 H 1.09004 * 109.47203 * 300.00154 * 16 15 13 30 30 H 1.09000 * 109.47095 * 59.99903 * 16 15 13 31 31 H 1.07999 * 126.57829 * 0.04598 * 18 17 16 32 32 H 1.08003 * 126.57614 * 179.97438 * 19 18 17 33 33 H 1.07998 * 125.78834 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.1489 -1.7840 1.2244 6 6 2.3431 0.0104 2.3640 7 7 2.7371 -0.6136 3.4526 8 14 2.2046 1.8732 2.3536 9 1 3.4567 2.4597 1.8119 10 1 1.0584 2.2796 1.5013 11 1 1.9884 2.3612 3.7394 12 7 2.0183 -0.6906 -1.1961 13 6 2.1470 -0.0182 -2.3571 14 8 1.8590 1.1586 -2.4115 15 6 2.6499 -0.7285 -3.5874 16 6 2.7006 0.2544 -4.7588 17 6 3.2029 -0.4559 -5.9893 18 6 2.4403 -1.0908 -6.8975 19 6 3.3173 -1.6106 -7.8772 20 6 4.5633 -1.2627 -7.5088 21 8 4.4874 -0.5577 -6.3681 22 1 -0.3634 0.5726 -0.8533 23 1 -0.3633 -1.0253 -0.0693 24 1 -0.3634 0.4526 0.9226 25 1 2.9554 -0.1065 4.2502 26 1 2.2490 -1.6317 -1.1525 27 1 3.6491 -1.1203 -3.3979 28 1 1.9777 -1.5508 -3.8325 29 1 1.7011 0.6458 -4.9483 30 1 3.3725 1.0770 -4.5140 31 1 1.3645 -1.1851 -6.8815 32 1 3.0399 -2.1787 -8.7529 33 1 5.4704 -1.5041 -8.0429 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050336056.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:35 Heat of formation + Delta-G solvation = -39.291948 kcal Electronic energy + Delta-G solvation = -16150.169411 eV Core-core repulsion = 13370.148622 eV Total energy + Delta-G solvation = -2780.020790 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.115 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -42.61690 -39.07669 -35.07994 -33.86065 -32.82363 -32.34566 -30.09704 -28.45333 -25.32923 -24.43442 -21.81658 -20.96705 -20.25163 -19.55091 -17.64047 -17.17321 -16.16429 -15.81297 -15.47278 -15.22956 -14.40897 -13.94507 -13.31847 -13.12997 -12.89947 -12.77486 -12.52942 -12.32381 -12.21918 -11.92994 -11.46933 -11.13339 -10.97541 -10.82718 -10.54883 -10.00618 -9.89024 -9.21349 -9.18983 -8.73282 -8.49548 -8.09751 -6.23665 -4.27629 1.65743 2.53159 2.93238 3.24240 3.29122 3.34135 3.41320 4.01053 4.32379 4.67875 4.93049 4.95703 5.06166 5.13210 5.20329 5.45101 5.69933 5.72826 5.75294 5.96653 5.98102 6.14210 6.32191 6.43776 6.53116 6.67532 6.93100 7.08657 7.17757 7.37620 7.55012 8.12957 8.56586 8.76488 8.97076 9.38281 10.88132 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.047918 B = 0.004569 C = 0.004543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.193899 B = 6126.681487 C = 6161.817040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.230 3.770 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.079 0.921 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.875 3.125 9 H -0.273 1.273 10 H -0.260 1.260 11 H -0.286 1.286 12 N -0.703 5.703 13 C 0.501 3.499 14 O -0.562 6.562 15 C -0.139 4.139 16 C -0.025 4.025 17 C -0.001 4.001 18 C -0.216 4.216 19 C -0.214 4.214 20 C -0.049 4.049 21 O -0.175 6.175 22 H 0.029 0.971 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.268 0.732 26 H 0.394 0.606 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.147 0.853 32 H 0.146 0.854 33 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.955 -2.229 -18.701 18.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.128 3.872 3 H 0.067 0.933 4 C -0.569 4.569 5 H 0.097 0.903 6 C -0.124 4.124 7 N -0.526 5.526 8 Si 0.702 3.298 9 H -0.199 1.199 10 H -0.184 1.184 11 H -0.212 1.212 12 N -0.351 5.351 13 C 0.287 3.713 14 O -0.442 6.442 15 C -0.179 4.179 16 C -0.063 4.063 17 C -0.051 4.051 18 C -0.235 4.235 19 C -0.233 4.233 20 C -0.117 4.117 21 O -0.072 6.072 22 H 0.048 0.952 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.078 0.922 26 H 0.227 0.773 27 H 0.111 0.889 28 H 0.111 0.889 29 H 0.119 0.881 30 H 0.107 0.893 31 H 0.165 0.835 32 H 0.164 0.836 33 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 1.041 -1.246 -18.331 18.403 hybrid contribution 0.013 0.199 -0.070 0.211 sum 1.054 -1.047 -18.401 18.461 Atomic orbital electron populations 1.22234 0.98642 1.00097 0.99725 1.19104 0.90876 0.94323 0.82899 0.93283 1.21019 1.45354 0.95795 0.94768 0.90345 1.24940 0.93555 0.98661 0.95241 1.69881 1.44180 1.36267 1.02303 0.86884 0.79883 0.85726 0.77336 1.19857 1.18444 1.21181 1.46611 1.64748 1.13932 1.09854 1.20458 0.78466 0.87514 0.84902 1.90645 1.51932 1.16196 1.85414 1.21679 1.03650 0.99362 0.93209 1.19878 1.02620 0.96729 0.87028 1.22636 0.80870 1.02699 0.98892 1.21618 1.00840 1.04582 0.96469 1.21824 0.92876 1.06299 1.02333 1.23997 1.00031 0.99434 0.88230 1.84046 1.28902 1.58312 1.35895 0.95215 0.93621 0.92699 0.92239 0.77251 0.88871 0.88913 0.88062 0.89252 0.83485 0.83648 0.78326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 9.44 37.16 0.35 -2.89 16 2 C 0.23 5.47 2.16 -69.09 -0.15 5.32 16 3 H 0.05 1.27 4.89 -51.93 -0.25 1.02 16 4 C -0.53 -14.27 9.05 -34.44 -0.31 -14.58 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 7 N -0.89 -26.22 13.96 55.43 0.77 -25.44 16 8 Si 0.88 21.59 26.74 -169.99 -4.55 17.04 16 9 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.26 -6.30 6.87 56.52 0.39 -5.91 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 N -0.70 -13.92 5.07 -54.94 -0.28 -14.20 16 13 C 0.50 9.28 7.79 -10.99 -0.09 9.19 16 14 O -0.56 -12.40 15.64 5.56 0.09 -12.31 16 15 C -0.14 -1.86 5.68 -27.88 -0.16 -2.02 16 16 C -0.03 -0.32 5.04 -27.89 -0.14 -0.47 16 17 C 0.00 -0.01 6.58 -35.63 -0.23 -0.24 16 18 C -0.22 -2.44 10.81 -39.70 -0.43 -2.87 16 19 C -0.21 -2.15 10.91 -39.70 -0.43 -2.58 16 20 C -0.05 -0.49 12.09 29.41 0.36 -0.13 16 21 O -0.18 -2.23 10.65 5.70 0.06 -2.17 16 22 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 23 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 24 H 0.05 1.21 7.92 -51.93 -0.41 0.80 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.39 6.83 8.59 -40.82 -0.35 6.48 16 27 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.10 1.28 8.10 -51.93 -0.42 0.86 16 30 H 0.09 1.24 8.10 -51.93 -0.42 0.82 16 31 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 32 H 0.15 1.11 8.06 -52.48 -0.42 0.68 16 33 H 0.20 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 288.87 15.07 4.35 4.35 Total: -1.00 -31.98 288.87 -5.27 -37.25 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -4.39 Total: 4.59 kcal Atomic # 6 Polarization: -7.78 SS G_CDS: -1.33 Total: -9.11 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.50 Total: -39.64 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.15 Total: -14.48 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.55 Total: 17.04 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -31.98 -5.27 -37.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050336056.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.046 kcal (2) G-P(sol) polarization free energy of solvation -31.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds