Wall clock time and date at job start Sun Mar 29 2020 21:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47506 * 277.67666 * 3 2 1 5 5 N 1.46497 * 109.47580 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99845 * 89.99884 * 5 4 3 7 7 C 1.50698 * 109.46936 * 84.17004 * 6 5 4 8 8 H 1.08000 * 120.00173 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99847 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00392 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99952 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47208 * 59.99835 * 11 9 7 13 13 H 1.48506 * 109.47173 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47189 * 299.99795 * 11 9 7 15 15 C 1.34777 * 119.99823 * 269.73034 * 5 4 3 16 16 O 1.21275 * 120.00163 * 5.56729 * 15 5 4 17 17 C 1.50703 * 119.99414 * 185.57397 * 15 5 4 18 18 N 1.46892 * 115.55360 * 35.14065 * 17 15 5 19 19 C 1.53003 * 117.49453 * 249.42838 * 17 15 5 20 20 C 1.52995 * 60.00070 * 252.51595 * 19 17 15 21 21 H 1.08998 * 109.46813 * 157.67793 * 3 2 1 22 22 H 1.09004 * 109.47620 * 37.68036 * 3 2 1 23 23 H 1.09011 * 109.47036 * 59.99957 * 4 3 2 24 24 H 1.09004 * 109.46983 * 300.00760 * 4 3 2 25 25 H 1.08999 * 109.47155 * 204.16687 * 6 5 4 26 26 H 1.08993 * 109.47243 * 324.16857 * 6 5 4 27 27 H 0.97000 * 120.00040 * 180.02562 * 10 9 7 28 28 H 1.00901 * 110.99826 * 278.47046 * 18 17 15 29 29 H 1.00900 * 111.00193 * 42.42574 * 18 17 15 30 30 H 1.09002 * 117.49770 * 0.02562 * 19 17 15 31 31 H 1.09006 * 117.49932 * 145.02174 * 19 17 15 32 32 H 1.09009 * 117.49708 * 252.51105 * 20 19 17 33 33 H 1.08996 * 117.52160 * 107.48471 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1181 -0.1918 1.4295 5 7 4.5831 -0.1905 1.4296 6 6 5.3144 1.0674 1.5993 7 6 5.4402 1.3812 3.0679 8 1 5.0173 0.7108 3.8015 9 6 6.0952 2.5240 3.4750 10 7 6.6107 3.3401 2.5819 11 14 6.2518 2.9126 5.2955 12 1 6.9880 1.8160 5.9742 13 1 6.9941 4.1872 5.4676 14 1 4.8981 3.0431 5.8920 15 6 5.2579 -1.3474 1.2790 16 8 4.6567 -2.3738 1.0427 17 6 6.7596 -1.3654 1.4045 18 7 7.3237 -0.4412 2.3971 19 6 7.5717 -1.6187 0.1327 20 6 7.4691 -2.7061 1.2041 21 1 2.9708 0.9515 -0.3903 22 1 2.9717 -0.8125 -0.6282 23 1 2.7552 -1.1427 1.8199 24 1 2.7543 0.6214 2.0577 25 1 6.3082 0.9718 1.1618 26 1 4.7739 1.8720 1.1009 27 1 7.0718 4.1440 2.8684 28 1 7.3972 0.4923 2.0213 29 1 6.7796 -0.4471 3.2469 30 1 7.0198 -1.7719 -0.7947 31 1 8.5248 -1.0993 0.0323 32 1 8.3548 -2.9021 1.8086 33 1 6.8498 -3.5751 0.9820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083835016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:47 Heat of formation + Delta-G solvation = 24.660821 kcal Electronic energy + Delta-G solvation = -17066.906791 eV Core-core repulsion = 14321.951952 eV Total energy + Delta-G solvation = -2744.954839 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.80656 -36.93327 -36.07638 -35.48208 -33.07894 -31.41517 -29.87446 -27.33526 -24.76787 -23.35573 -22.09700 -21.32365 -18.29595 -17.51050 -16.78426 -16.55157 -15.65165 -15.00033 -14.74657 -14.66414 -14.13415 -13.87368 -13.51756 -13.13073 -12.64809 -12.51985 -12.31429 -12.13066 -11.67313 -11.44998 -11.15836 -11.10761 -10.85345 -10.70132 -10.50344 -10.37377 -10.04033 -9.86540 -9.40947 -8.74078 -8.01854 -7.73540 -6.36810 -4.45939 2.80968 2.92244 3.04033 3.17110 3.22871 3.26410 3.58002 4.19122 4.31657 4.33621 4.91312 5.00560 5.06276 5.28052 5.32034 5.41168 5.63715 5.72670 5.95629 5.96976 6.18159 6.20329 6.26062 6.47920 6.53818 6.93616 7.27307 7.55378 7.68120 7.78885 7.98630 8.12557 8.35631 8.57420 8.79083 9.22824 10.68514 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.010258 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.533666 B = 2729.046598 C = 4048.387510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.221 3.779 3 C -0.045 4.045 4 C 0.127 3.873 5 N -0.593 5.593 6 C 0.225 3.775 7 C -0.554 4.554 8 H 0.064 0.936 9 C 0.073 3.927 10 N -0.882 5.882 11 Si 0.897 3.103 12 H -0.272 1.272 13 H -0.286 1.286 14 H -0.277 1.277 15 C 0.524 3.476 16 O -0.567 6.567 17 C 0.023 3.977 18 N -0.806 5.806 19 C -0.153 4.153 20 C -0.138 4.138 21 H 0.111 0.889 22 H 0.108 0.892 23 H 0.079 0.921 24 H 0.089 0.911 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.269 0.731 28 H 0.369 0.631 29 H 0.359 0.641 30 H 0.092 0.908 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 -4.392 -3.526 5.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.128 5.128 2 C -0.097 4.097 3 C -0.086 4.086 4 C 0.001 3.999 5 N -0.323 5.323 6 C 0.105 3.895 7 C -0.592 4.592 8 H 0.082 0.918 9 C -0.132 4.132 10 N -0.519 5.519 11 Si 0.724 3.276 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.202 1.202 15 C 0.310 3.690 16 O -0.447 6.447 17 C -0.074 4.074 18 N -0.347 5.347 19 C -0.191 4.191 20 C -0.177 4.177 21 H 0.129 0.871 22 H 0.127 0.873 23 H 0.097 0.903 24 H 0.108 0.892 25 H 0.067 0.933 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.191 0.809 29 H 0.177 0.823 30 H 0.111 0.889 31 H 0.121 0.879 32 H 0.120 0.880 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.298 -5.131 -3.689 6.326 hybrid contribution -0.387 1.088 0.983 1.516 sum -0.089 -4.043 -2.706 4.866 Atomic orbital electron populations 1.81174 1.13061 1.09667 1.08860 1.29114 0.95130 0.92518 0.92914 1.19763 0.81314 1.05845 1.01687 1.21118 0.81616 1.03739 0.93401 1.48163 1.05177 1.09154 1.69824 1.19847 0.92604 0.79613 0.97421 1.21408 1.38008 1.08066 0.91717 0.91763 1.24904 0.94708 0.95465 0.98121 1.69883 1.35492 1.12788 1.33729 0.86556 0.78401 0.77980 0.84660 1.19694 1.21146 1.20237 1.20638 0.89639 0.82905 0.75817 1.90590 1.70378 1.33268 1.50417 1.21191 0.87691 0.99857 0.98693 1.59014 1.55126 1.14040 1.06535 1.23011 1.01220 1.02842 0.91990 1.23018 1.01805 0.91725 1.01115 0.87066 0.87349 0.90256 0.89218 0.93343 0.94441 0.92087 0.80885 0.82292 0.88938 0.87854 0.88032 0.88266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -7.56 18.54 42.15 0.78 -6.78 16 2 C 0.22 3.21 15.43 -20.76 -0.32 2.89 16 3 C -0.04 -0.58 6.03 -29.52 -0.18 -0.76 16 4 C 0.13 2.00 5.34 -4.04 -0.02 1.98 16 5 N -0.59 -10.72 2.46 -175.06 -0.43 -11.15 16 6 C 0.23 4.54 4.63 -5.19 -0.02 4.52 16 7 C -0.55 -12.30 6.23 -34.44 -0.21 -12.51 16 8 H 0.06 1.47 7.71 -52.49 -0.40 1.07 16 9 C 0.07 1.71 5.42 -17.82 -0.10 1.61 16 10 N -0.88 -21.54 13.29 55.43 0.74 -20.80 16 11 Si 0.90 18.88 29.54 -169.99 -5.02 13.86 16 12 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 13 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 14 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 15 C 0.52 9.87 7.29 -10.98 -0.08 9.79 16 16 O -0.57 -11.61 15.89 5.56 0.09 -11.52 16 17 C 0.02 0.41 2.29 -132.75 -0.30 0.10 16 18 N -0.81 -15.05 8.57 -0.19 0.00 -15.05 16 19 C -0.15 -2.26 10.16 -26.73 -0.27 -2.53 16 20 C -0.14 -2.11 9.97 -26.73 -0.27 -2.37 16 21 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 22 H 0.11 1.37 8.14 -51.93 -0.42 0.95 16 23 H 0.08 1.30 7.50 -51.92 -0.39 0.91 16 24 H 0.09 1.43 8.07 -51.93 -0.42 1.01 16 25 H 0.05 1.02 4.82 -51.93 -0.25 0.77 16 26 H 0.04 0.79 8.11 -51.93 -0.42 0.37 16 27 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 28 H 0.37 7.43 5.46 -39.29 -0.21 7.22 16 29 H 0.36 7.20 6.90 -39.29 -0.27 6.92 16 30 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 31 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.10 1.44 8.14 -51.92 -0.42 1.02 16 33 H 0.10 1.52 7.67 -51.93 -0.40 1.12 16 LS Contribution 287.67 15.07 4.34 4.34 Total: -1.00 -25.44 287.67 -5.31 -30.74 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: -4.02 Total: 13.65 kcal Atomic # 6 Polarization: 4.49 SS G_CDS: -1.78 Total: 2.71 kcal Atomic # 7 Polarization: -54.86 SS G_CDS: 1.09 Total: -53.78 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.52 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.02 Total: 13.86 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -25.44 -5.31 -30.74 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083835016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.403 kcal (2) G-P(sol) polarization free energy of solvation -25.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds