Wall clock time and date at job start Sun Mar 29 2020 21:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.52998 * 109.47506 * 277.67666 * 3 2 1 5 5 N 1.46497 * 109.47580 * 180.02562 * 4 3 2 6 6 C 1.46500 * 119.99845 * 89.99884 * 5 4 3 7 7 C 1.50698 * 109.46936 * 84.17004 * 6 5 4 8 8 H 1.08000 * 120.00173 * 359.97438 * 7 6 5 9 9 C 1.37874 * 119.99847 * 179.97438 * 7 6 5 10 10 N 1.31512 * 120.00392 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 119.99952 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47208 * 59.99835 * 11 9 7 13 13 H 1.48506 * 109.47173 * 179.97438 * 11 9 7 14 14 H 1.48505 * 109.47189 * 299.99795 * 11 9 7 15 15 C 1.34777 * 119.99823 * 269.73034 * 5 4 3 16 16 O 1.21275 * 120.00163 * 5.56729 * 15 5 4 17 17 C 1.50703 * 119.99414 * 185.57397 * 15 5 4 18 18 N 1.46892 * 115.55360 * 35.14065 * 17 15 5 19 19 C 1.53003 * 117.49453 * 249.42838 * 17 15 5 20 20 C 1.52995 * 60.00070 * 252.51595 * 19 17 15 21 21 H 1.08998 * 109.46813 * 157.67793 * 3 2 1 22 22 H 1.09004 * 109.47620 * 37.68036 * 3 2 1 23 23 H 1.09011 * 109.47036 * 59.99957 * 4 3 2 24 24 H 1.09004 * 109.46983 * 300.00760 * 4 3 2 25 25 H 1.08999 * 109.47155 * 204.16687 * 6 5 4 26 26 H 1.08993 * 109.47243 * 324.16857 * 6 5 4 27 27 H 0.97000 * 120.00040 * 180.02562 * 10 9 7 28 28 H 1.00901 * 110.99826 * 278.47046 * 18 17 15 29 29 H 1.00900 * 111.00193 * 42.42574 * 18 17 15 30 30 H 1.09002 * 117.49770 * 0.02562 * 19 17 15 31 31 H 1.09006 * 117.49932 * 145.02174 * 19 17 15 32 32 H 1.09009 * 117.49708 * 252.51105 * 20 19 17 33 33 H 1.08996 * 117.52160 * 107.48471 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1181 -0.1918 1.4295 5 7 4.5831 -0.1905 1.4296 6 6 5.3144 1.0674 1.5993 7 6 5.4402 1.3812 3.0679 8 1 5.0173 0.7108 3.8015 9 6 6.0952 2.5240 3.4750 10 7 6.6107 3.3401 2.5819 11 14 6.2518 2.9126 5.2955 12 1 6.9880 1.8160 5.9742 13 1 6.9941 4.1872 5.4676 14 1 4.8981 3.0431 5.8920 15 6 5.2579 -1.3474 1.2790 16 8 4.6567 -2.3738 1.0427 17 6 6.7596 -1.3654 1.4045 18 7 7.3237 -0.4412 2.3971 19 6 7.5717 -1.6187 0.1327 20 6 7.4691 -2.7061 1.2041 21 1 2.9708 0.9515 -0.3903 22 1 2.9717 -0.8125 -0.6282 23 1 2.7552 -1.1427 1.8199 24 1 2.7543 0.6214 2.0577 25 1 6.3082 0.9718 1.1618 26 1 4.7739 1.8720 1.1009 27 1 7.0718 4.1440 2.8684 28 1 7.3972 0.4923 2.0213 29 1 6.7796 -0.4471 3.2469 30 1 7.0198 -1.7719 -0.7947 31 1 8.5248 -1.0993 0.0323 32 1 8.3548 -2.9021 1.8086 33 1 6.8498 -3.5751 0.9820 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083835016.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:45:46 Heat of formation + Delta-G solvation = 9.489085 kcal Electronic energy + Delta-G solvation = -17067.564687 eV Core-core repulsion = 14321.951952 eV Total energy + Delta-G solvation = -2745.612734 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 237.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.24498 -38.19657 -37.41772 -36.99043 -34.72527 -32.80964 -31.25204 -29.00194 -26.09217 -25.03795 -23.29541 -22.68834 -19.74575 -18.84039 -18.38626 -17.97884 -17.12208 -16.38554 -16.31954 -16.01086 -15.54075 -15.22677 -14.91504 -14.48137 -14.21807 -13.95993 -13.59151 -13.52814 -13.09820 -12.99045 -12.74368 -12.49627 -12.27533 -12.19666 -11.89706 -11.74448 -11.64801 -11.35563 -10.77814 -10.53615 -9.54513 -9.20772 -8.15945 -6.27298 1.48185 1.51237 1.53785 1.56035 1.68245 1.74291 2.20855 2.46714 3.04827 3.11372 3.16826 3.60634 3.68797 4.08694 4.11837 4.19430 4.38674 4.50384 4.72239 4.81399 4.88184 4.92160 4.98750 5.08391 5.27941 5.37165 5.69350 5.80159 6.06101 6.46153 6.50987 6.58076 6.76671 6.83583 7.28905 7.44374 8.88077 Molecular weight = 237.12amu Principal moments of inertia in cm(-1) A = 0.015937 B = 0.010258 C = 0.006915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1756.533666 B = 2729.046598 C = 4048.387510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.244 3.756 3 C -0.029 4.029 4 C 0.123 3.877 5 N -0.591 5.591 6 C 0.239 3.761 7 C -0.546 4.546 8 H 0.055 0.945 9 C 0.041 3.959 10 N -0.905 5.905 11 Si 0.942 3.058 12 H -0.271 1.271 13 H -0.289 1.289 14 H -0.281 1.281 15 C 0.521 3.479 16 O -0.586 6.586 17 C -0.006 4.006 18 N -0.801 5.801 19 C -0.134 4.134 20 C -0.127 4.127 21 H 0.130 0.870 22 H 0.119 0.881 23 H 0.073 0.927 24 H 0.087 0.913 25 H 0.046 0.954 26 H 0.030 0.970 27 H 0.268 0.732 28 H 0.359 0.641 29 H 0.349 0.651 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.073 -4.787 -3.962 6.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.073 4.073 3 C -0.070 4.070 4 C -0.002 4.002 5 N -0.321 5.321 6 C 0.118 3.882 7 C -0.585 4.585 8 H 0.073 0.927 9 C -0.161 4.161 10 N -0.544 5.544 11 Si 0.769 3.231 12 H -0.197 1.197 13 H -0.215 1.215 14 H -0.207 1.207 15 C 0.309 3.691 16 O -0.467 6.467 17 C -0.103 4.103 18 N -0.339 5.339 19 C -0.172 4.172 20 C -0.165 4.165 21 H 0.148 0.852 22 H 0.137 0.863 23 H 0.091 0.909 24 H 0.105 0.895 25 H 0.064 0.936 26 H 0.048 0.952 27 H 0.077 0.923 28 H 0.180 0.820 29 H 0.165 0.835 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 0.814 -5.539 -4.126 6.955 hybrid contribution -0.546 1.165 1.128 1.711 sum 0.268 -4.374 -2.998 5.310 Atomic orbital electron populations 1.81203 1.14242 1.11130 1.10049 1.29219 0.95092 0.91239 0.91735 1.19678 0.80128 1.07249 0.99976 1.21184 0.80466 1.03348 0.95174 1.48097 1.05950 1.08416 1.69602 1.19569 0.92543 0.80086 0.96028 1.21514 1.36922 1.07408 0.92637 0.92658 1.25341 0.94868 0.95660 1.00268 1.69943 1.36552 1.13171 1.34693 0.85856 0.77834 0.77462 0.81956 1.19661 1.21506 1.20683 1.20890 0.90275 0.82613 0.75353 1.90578 1.70890 1.33693 1.51497 1.21356 0.87226 1.01297 1.00470 1.59005 1.54893 1.13640 1.06373 1.23124 1.01016 1.01659 0.91395 1.23065 1.01552 0.90831 1.01100 0.85224 0.86278 0.90875 0.89472 0.93616 0.95186 0.92308 0.81994 0.83467 0.87829 0.86697 0.86937 0.88329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -15.94 18.54 20.00 0.37 -15.57 16 2 C 0.24 6.74 15.43 89.44 1.38 8.12 16 3 C -0.03 -0.71 6.03 28.79 0.17 -0.53 16 4 C 0.12 3.74 5.34 86.38 0.46 4.20 16 5 N -0.59 -20.65 2.46 -826.16 -2.03 -22.68 16 6 C 0.24 9.39 4.63 85.63 0.40 9.78 16 7 C -0.55 -23.89 6.23 25.60 0.16 -23.73 16 8 H 0.06 2.50 7.71 -2.91 -0.02 2.48 16 9 C 0.04 1.89 5.42 84.65 0.46 2.35 16 10 N -0.91 -43.69 13.29 21.45 0.28 -43.40 16 11 Si 0.94 38.29 29.54 68.60 2.03 40.32 16 12 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 13 H -0.29 -11.87 7.11 99.48 0.71 -11.17 16 14 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 15 C 0.52 18.93 7.29 87.66 0.64 19.57 16 16 O -0.59 -23.14 15.89 -3.02 -0.05 -23.19 16 17 C -0.01 -0.20 2.29 2.78 0.01 -0.20 16 18 N -0.80 -29.06 8.57 -154.53 -1.33 -30.39 16 19 C -0.13 -3.62 10.16 30.59 0.31 -3.31 16 20 C -0.13 -3.59 9.97 30.59 0.31 -3.29 16 21 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 22 H 0.12 2.73 8.14 -2.38 -0.02 2.71 16 23 H 0.07 2.33 7.50 -2.38 -0.02 2.31 16 24 H 0.09 2.69 8.07 -2.38 -0.02 2.67 16 25 H 0.05 1.87 4.82 -2.39 -0.01 1.86 16 26 H 0.03 1.24 8.11 -2.39 -0.02 1.22 16 27 H 0.27 12.62 8.31 -92.71 -0.77 11.85 16 28 H 0.36 14.17 5.46 -89.69 -0.49 13.68 16 29 H 0.35 13.77 6.90 -89.69 -0.62 13.15 16 30 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 31 H 0.11 2.85 8.14 -2.38 -0.02 2.83 16 32 H 0.11 2.92 8.14 -2.38 -0.02 2.90 16 33 H 0.10 2.82 7.67 -2.39 -0.02 2.80 16 Total: -1.00 -52.05 287.67 3.60 -48.45 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.04 Total: 33.50 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 4.29 Total: 12.97 kcal Atomic # 7 Polarization: -109.35 SS G_CDS: -2.70 Total: -112.05 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.05 Total: -23.19 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Total: -52.05 3.60 -48.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083835016.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.939 kcal (2) G-P(sol) polarization free energy of solvation -52.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds